Wall clock time and date at job start Tue Mar 31 2020 19:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47500 * 2 1 4 4 O 1.42904 * 109.47153 * 119.99957 * 2 1 3 5 5 C 1.35895 * 116.99964 * 86.47360 * 4 2 1 6 6 C 1.38754 * 120.05986 * 354.59892 * 5 4 2 7 7 C 1.38122 * 119.94493 * 180.02562 * 6 5 4 8 8 C 1.38284 * 120.05832 * 359.97438 * 7 6 5 9 9 C 1.38251 * 120.11086 * 0.02562 * 8 7 6 10 10 C 1.38162 * 120.05191 * 359.97438 * 9 8 7 11 11 C 1.50706 * 120.02491 * 179.97438 * 10 9 8 12 12 C 1.50702 * 109.47130 * 265.02430 * 11 10 9 13 13 O 1.21283 * 119.99942 * 0.02562 * 12 11 10 14 14 N 1.34774 * 119.99994 * 179.97438 * 12 11 10 15 15 C 1.46492 * 120.00021 * 179.97438 * 14 12 11 16 16 C 1.53006 * 109.47247 * 180.02562 * 15 14 12 17 17 C 1.53004 * 109.47029 * 180.02562 * 16 15 14 18 18 N 1.46505 * 109.46797 * 180.02562 * 17 16 15 19 19 C 1.46505 * 119.99774 * 270.00403 * 18 17 16 20 20 C 1.36930 * 119.99685 * 90.00178 * 18 17 16 21 21 H 1.07992 * 120.00571 * 22.49678 * 20 18 17 22 22 C 1.38815 * 119.99557 * 202.49202 * 20 18 17 23 23 N 1.31618 * 120.00558 * 13.88754 * 22 20 18 24 24 Si 1.86808 * 119.99873 * 193.87818 * 22 20 18 25 25 H 1.48495 * 109.46899 * 0.02562 * 24 22 20 26 26 H 1.48508 * 109.46757 * 120.00145 * 24 22 20 27 27 H 1.48498 * 109.47152 * 240.00433 * 24 22 20 28 28 H 1.08995 * 109.47192 * 300.00540 * 1 2 3 29 29 H 1.09004 * 109.46531 * 60.00273 * 1 2 3 30 30 H 1.08995 * 109.46988 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47192 * 239.99460 * 2 1 3 32 32 H 1.08998 * 109.46953 * 179.97438 * 3 2 1 33 33 H 1.09005 * 109.46600 * 299.99785 * 3 2 1 34 34 H 1.08995 * 109.47339 * 59.99550 * 3 2 1 35 35 H 1.07996 * 120.02303 * 359.97438 * 6 5 4 36 36 H 1.08005 * 119.96684 * 179.71932 * 7 6 5 37 37 H 1.08002 * 119.94399 * 179.97438 * 8 7 6 38 38 H 1.07999 * 119.97150 * 179.97438 * 9 8 7 39 39 H 1.09005 * 109.46761 * 25.02188 * 11 10 9 40 40 H 1.08994 * 109.46923 * 145.02225 * 11 10 9 41 41 H 0.97004 * 119.99841 * 0.02562 * 14 12 11 42 42 H 1.08993 * 109.47600 * 300.00266 * 15 14 12 43 43 H 1.09001 * 109.47323 * 60.00216 * 15 14 12 44 44 H 1.08999 * 109.47234 * 300.00232 * 16 15 14 45 45 H 1.09000 * 109.46897 * 60.00607 * 16 15 14 46 46 H 1.08999 * 109.47288 * 300.00182 * 17 16 15 47 47 H 1.09000 * 109.46799 * 60.00531 * 17 16 15 48 48 H 1.08997 * 109.47345 * 95.10597 * 19 18 17 49 49 H 1.09006 * 109.46634 * 215.10440 * 19 18 17 50 50 H 1.08999 * 109.47083 * 335.10100 * 19 18 17 51 51 H 0.96996 * 120.00451 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.1418 -2.0235 1.0878 6 6 1.7181 -2.6992 -0.0476 7 6 1.8564 -4.0713 -0.1252 8 6 2.4171 -4.7716 0.9272 9 6 2.8400 -4.1007 2.0596 10 6 2.7038 -2.7283 2.1421 11 6 3.1646 -1.9976 3.3770 12 6 1.9989 -1.8091 4.3134 13 8 0.9021 -2.2273 4.0082 14 7 2.1754 -1.1766 5.4904 15 6 1.0422 -0.9929 6.4003 16 6 1.5100 -0.2512 7.6542 17 6 0.3265 -0.0598 8.6048 18 7 0.7743 0.6509 9.8051 19 6 1.2660 -0.1021 10.9616 20 6 0.7333 2.0190 9.8460 21 1 0.0650 2.5590 9.1917 22 6 1.5507 2.7118 10.7284 23 7 2.5487 2.0942 11.3242 24 14 1.2346 4.5209 11.0702 25 1 0.0617 4.9761 10.2814 26 1 0.9612 4.7108 12.5175 27 1 2.4293 5.3138 10.6839 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9563 -0.8901 34 1 1.6768 1.9564 0.8899 35 1 1.2798 -2.1528 -0.8696 36 1 1.5226 -4.5982 -1.0070 37 1 2.5239 -5.8445 0.8647 38 1 3.2772 -4.6499 2.8804 39 1 3.9403 -2.5793 3.8751 40 1 3.5652 -1.0240 3.0949 41 1 3.0528 -0.8425 5.7346 42 1 0.2670 -0.4107 5.9023 43 1 0.6409 -1.9663 6.6821 44 1 2.2854 -0.8330 8.1525 45 1 1.9109 0.7224 7.3721 46 1 -0.4493 0.5218 8.1068 47 1 -0.0740 -1.0335 8.8869 48 1 2.3528 -0.1707 10.9152 49 1 0.9730 0.4086 11.8790 50 1 0.8378 -1.1045 10.9512 51 1 3.1201 2.5783 11.9406 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001712977679.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:22 Heat of formation + Delta-G solvation = -60.650027 kcal Electronic energy + Delta-G solvation = -28484.707430 eV Core-core repulsion = 24576.882719 eV Total energy + Delta-G solvation = -3907.824711 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.52749 -40.41616 -38.59969 -37.92922 -36.12008 -34.45107 -33.80962 -33.37447 -31.70508 -30.84645 -28.71003 -28.18240 -27.91405 -26.58836 -24.35901 -23.74322 -22.66306 -22.14121 -21.68080 -21.10295 -19.10831 -18.76431 -17.94553 -17.30993 -17.17946 -16.78142 -16.54509 -16.34539 -16.22701 -15.67625 -15.57859 -15.33970 -15.03946 -14.70452 -14.57335 -14.48993 -14.21164 -14.00778 -13.60708 -13.41081 -13.25782 -13.13367 -13.06289 -12.94035 -12.78132 -12.73616 -12.70475 -12.45833 -12.28007 -12.26618 -12.10460 -12.00905 -11.85100 -11.69912 -11.51009 -11.46911 -10.95525 -10.64705 -10.04602 -9.77340 -9.04469 -8.79707 -7.82731 -5.30532 0.37342 0.54798 1.45625 1.47527 1.57680 1.71273 2.26660 2.29144 2.51736 2.89810 3.31132 3.66518 3.69613 3.80938 3.87005 3.93997 4.05015 4.09312 4.12393 4.19669 4.30266 4.36137 4.38675 4.50189 4.57305 4.62901 4.64783 4.67238 4.69579 4.77563 4.80623 4.84008 4.88039 4.91142 4.95175 5.11947 5.17962 5.22389 5.30133 5.30919 5.42488 5.43072 5.52005 5.52481 5.62091 5.65330 5.72403 5.92948 6.33843 6.52097 6.62041 7.15700 7.30721 7.87788 8.31344 9.20753 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014903 B = 0.002202 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.336739 B =12713.778656 C =13936.031862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.070 3.930 3 C -0.147 4.147 4 O -0.327 6.327 5 C 0.127 3.873 6 C -0.221 4.221 7 C -0.086 4.086 8 C -0.165 4.165 9 C -0.081 4.081 10 C -0.122 4.122 11 C -0.087 4.087 12 C 0.514 3.486 13 O -0.580 6.580 14 N -0.723 5.723 15 C 0.135 3.865 16 C -0.127 4.127 17 C 0.150 3.850 18 N -0.620 5.620 19 C 0.174 3.826 20 C -0.261 4.261 21 H 0.069 0.931 22 C -0.054 4.054 23 N -0.937 5.937 24 Si 0.966 3.034 25 H -0.268 1.268 26 H -0.291 1.291 27 H -0.291 1.291 28 H 0.048 0.952 29 H 0.096 0.904 30 H 0.052 0.948 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.099 0.901 34 H 0.054 0.946 35 H 0.142 0.858 36 H 0.148 0.852 37 H 0.145 0.855 38 H 0.142 0.858 39 H 0.129 0.871 40 H 0.111 0.889 41 H 0.412 0.588 42 H 0.052 0.948 43 H 0.062 0.938 44 H 0.056 0.944 45 H 0.049 0.951 46 H 0.046 0.954 47 H 0.059 0.941 48 H 0.007 0.993 49 H 0.014 0.986 50 H 0.032 0.968 51 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.529 -10.752 -26.992 29.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.015 3.985 3 C -0.204 4.204 4 O -0.241 6.241 5 C 0.082 3.918 6 C -0.239 4.239 7 C -0.103 4.103 8 C -0.183 4.183 9 C -0.099 4.099 10 C -0.123 4.123 11 C -0.126 4.126 12 C 0.302 3.698 13 O -0.460 6.460 14 N -0.375 5.375 15 C 0.011 3.989 16 C -0.168 4.168 17 C 0.024 3.976 18 N -0.343 5.343 19 C 0.030 3.970 20 C -0.391 4.391 21 H 0.086 0.914 22 C -0.249 4.249 23 N -0.584 5.584 24 Si 0.794 3.206 25 H -0.193 1.193 26 H -0.218 1.218 27 H -0.218 1.218 28 H 0.068 0.932 29 H 0.114 0.886 30 H 0.071 0.929 31 H 0.106 0.894 32 H 0.085 0.915 33 H 0.118 0.882 34 H 0.073 0.927 35 H 0.160 0.840 36 H 0.166 0.834 37 H 0.163 0.837 38 H 0.159 0.841 39 H 0.147 0.853 40 H 0.129 0.871 41 H 0.248 0.752 42 H 0.070 0.930 43 H 0.081 0.919 44 H 0.075 0.925 45 H 0.068 0.932 46 H 0.065 0.935 47 H 0.078 0.922 48 H 0.026 0.974 49 H 0.033 0.967 50 H 0.050 0.950 51 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 1.857 -10.837 -26.906 29.066 hybrid contribution 0.262 1.247 0.653 1.432 sum 2.120 -9.590 -26.253 28.030 Atomic orbital electron populations 1.22342 0.95055 1.02527 1.03400 1.22684 0.94501 0.94294 0.87065 1.21887 1.02124 0.92713 1.03649 1.86111 1.81122 1.16910 1.39983 1.19030 0.95105 0.82965 0.94694 1.21468 1.07386 0.96399 0.98695 1.21286 0.96533 0.93165 0.99357 1.21337 1.01842 1.01176 0.93987 1.21153 0.97962 0.92125 0.98652 1.18909 1.04777 0.94102 0.94560 1.20495 0.96194 1.03593 0.92365 1.21072 0.90506 0.76536 0.81707 1.90667 1.28357 1.51179 1.75805 1.46063 1.13588 1.58993 1.18839 1.21147 0.88751 0.99725 0.89321 1.22179 1.00589 0.99304 0.94712 1.20889 0.94320 0.95778 0.86614 1.44236 1.75529 1.02697 1.11860 1.20572 0.96199 0.91560 0.88716 1.19538 1.16323 0.83147 1.20087 0.91358 1.25758 0.95978 1.01794 1.01327 1.70226 1.18251 1.36795 1.33084 0.85221 0.77460 0.80526 0.77349 1.19264 1.21818 1.21808 0.93248 0.88577 0.92906 0.89431 0.91510 0.88201 0.92731 0.84024 0.83408 0.83680 0.84059 0.85302 0.87085 0.75217 0.92967 0.91921 0.92493 0.93239 0.93528 0.92234 0.97441 0.96750 0.94957 0.94292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.00 9.21 71.98 0.66 -2.34 16 2 C 0.07 1.20 2.84 30.59 0.09 1.29 16 3 C -0.15 -2.05 9.56 71.98 0.69 -1.37 16 4 O -0.33 -7.92 8.93 -92.37 -0.82 -8.75 16 5 C 0.13 3.05 6.59 22.51 0.15 3.20 16 6 C -0.22 -4.34 8.32 22.37 0.19 -4.15 16 7 C -0.09 -1.44 10.04 22.25 0.22 -1.22 16 8 C -0.17 -2.86 10.04 22.28 0.22 -2.64 16 9 C -0.08 -1.62 9.68 22.25 0.22 -1.40 16 10 C -0.12 -2.87 4.39 -19.77 -0.09 -2.95 16 11 C -0.09 -1.85 5.55 29.10 0.16 -1.68 16 12 C 0.51 14.76 7.82 87.66 0.69 15.45 16 13 O -0.58 -21.60 16.03 -3.04 -0.05 -21.65 16 14 N -0.72 -19.50 5.56 -463.07 -2.57 -22.07 16 15 C 0.14 4.18 5.67 86.38 0.49 4.67 16 16 C -0.13 -4.52 5.65 30.60 0.17 -4.34 16 17 C 0.15 6.04 5.71 86.38 0.49 6.54 16 18 N -0.62 -31.28 2.92 -726.91 -2.12 -33.40 16 19 C 0.17 8.66 9.02 127.77 1.15 9.82 16 20 C -0.26 -14.39 9.66 84.04 0.81 -13.58 16 21 H 0.07 3.69 7.86 -2.91 -0.02 3.67 16 22 C -0.05 -3.01 5.08 84.86 0.43 -2.58 16 23 N -0.94 -55.34 10.73 21.65 0.23 -55.11 16 24 Si 0.97 45.25 29.58 68.60 2.03 47.28 16 25 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 26 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 27 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 28 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 30 H 0.05 1.00 7.09 -2.39 -0.02 0.98 16 31 H 0.09 1.19 6.21 -2.39 -0.01 1.18 16 32 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16 34 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.14 2.19 5.49 -2.91 -0.02 2.17 16 36 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 37 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 38 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 39 H 0.13 1.90 8.05 -2.38 -0.02 1.88 16 40 H 0.11 2.18 7.69 -2.39 -0.02 2.16 16 41 H 0.41 9.18 8.47 -92.71 -0.79 8.39 16 42 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 45 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 46 H 0.05 1.85 8.03 -2.39 -0.02 1.83 16 47 H 0.06 2.14 7.86 -2.39 -0.02 2.12 16 48 H 0.01 0.39 7.35 -2.39 -0.02 0.38 16 49 H 0.01 0.75 7.33 -2.38 -0.02 0.73 16 50 H 0.03 1.35 7.84 -2.39 -0.02 1.33 16 51 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 Total: -1.00 -73.53 414.95 3.56 -69.98 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: 0.12 Total: 21.02 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: 6.75 Total: 2.70 kcal Atomic # 7 Polarization: -106.12 SS G_CDS: -4.46 Total: -110.58 kcal Atomic # 8 Polarization: -29.52 SS G_CDS: -0.87 Total: -30.39 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -73.53 3.56 -69.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001712977679.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.325 kcal (2) G-P(sol) polarization free energy of solvation -73.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds