Wall clock time and date at job start Tue Mar 31 2020 19:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47116 * 2 1 4 4 O 1.42909 * 109.47187 * 119.99212 * 2 1 3 5 5 C 1.42903 * 113.99516 * 90.00246 * 4 2 1 6 6 H 1.09002 * 109.47382 * 30.00095 * 5 4 2 7 7 C 1.50699 * 109.47184 * 270.00097 * 5 4 2 8 8 O 1.21286 * 119.99722 * 355.00184 * 7 5 4 9 9 N 1.34777 * 120.00178 * 175.00129 * 7 5 4 10 10 C 1.46496 * 119.99833 * 0.02562 * 9 7 5 11 11 C 1.46500 * 120.00097 * 179.97438 * 9 7 5 12 12 C 1.52999 * 109.47100 * 90.00394 * 11 9 7 13 13 C 1.52993 * 109.47141 * 180.02562 * 12 11 9 14 14 N 1.46504 * 109.47227 * 179.97438 * 13 12 11 15 15 C 1.36942 * 119.99797 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00250 * 0.02562 * 15 14 13 17 17 C 1.38813 * 119.99303 * 180.02562 * 15 14 13 18 18 N 1.31618 * 119.99717 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 120.00442 * 0.02562 * 17 15 14 20 20 H 1.48494 * 109.47133 * 89.99805 * 19 17 15 21 21 H 1.48502 * 109.47026 * 210.00435 * 19 17 15 22 22 H 1.48500 * 109.46765 * 329.99688 * 19 17 15 23 23 C 1.50701 * 109.46878 * 150.00028 * 5 4 2 24 24 C 1.38242 * 119.99675 * 39.72817 * 23 5 4 25 25 C 1.38235 * 119.99458 * 179.81160 * 24 23 5 26 26 C 1.38236 * 120.00304 * 0.38687 * 25 24 23 27 27 C 1.38242 * 119.99796 * 359.86995 * 26 25 24 28 28 C 1.38230 * 119.99958 * 359.94576 * 27 26 25 29 29 H 1.08997 * 109.47242 * 60.00508 * 1 2 3 30 30 H 1.08996 * 109.46880 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47303 * 300.00384 * 1 2 3 32 32 H 1.08997 * 109.47303 * 239.99616 * 2 1 3 33 33 H 1.08998 * 109.47299 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.46492 * 299.99447 * 3 2 1 35 35 H 1.08997 * 109.47348 * 59.99644 * 3 2 1 36 36 H 1.08997 * 109.47372 * 89.99591 * 10 9 7 37 37 H 1.09003 * 109.47041 * 209.99593 * 10 9 7 38 38 H 1.09002 * 109.47265 * 329.99586 * 10 9 7 39 39 H 1.08999 * 109.47336 * 210.00463 * 11 9 7 40 40 H 1.08999 * 109.47227 * 330.00355 * 11 9 7 41 41 H 1.09008 * 109.46871 * 299.99659 * 12 11 9 42 42 H 1.08995 * 109.47484 * 59.99567 * 12 11 9 43 43 H 1.08999 * 109.47101 * 299.99950 * 13 12 11 44 44 H 1.08999 * 109.47421 * 59.99817 * 13 12 11 45 45 H 0.96996 * 119.99867 * 359.97438 * 14 13 12 46 46 H 0.97000 * 120.00113 * 179.97438 * 18 17 15 47 47 H 1.07997 * 120.00052 * 359.97438 * 24 23 5 48 48 H 1.08000 * 119.99878 * 180.22948 * 25 24 23 49 49 H 1.08004 * 120.00024 * 179.83199 * 26 25 24 50 50 H 1.08000 * 119.99869 * 179.97438 * 27 26 25 51 51 H 1.07999 * 119.99817 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6735 1.1669 5 6 2.2001 -2.0781 0.9888 6 1 2.4629 -2.2799 -0.0496 7 6 0.9287 -2.8087 1.3364 8 8 -0.0177 -2.1982 1.7867 9 7 0.8432 -4.1403 1.1467 10 6 1.9865 -4.8776 0.6033 11 6 -0.3926 -4.8505 1.4851 12 6 -1.3165 -4.8758 0.2658 13 6 -2.6074 -5.6170 0.6194 14 7 -3.4923 -5.6406 -0.5479 15 6 -4.7137 -6.2548 -0.4688 16 1 -5.0248 -6.7213 0.4542 17 6 -5.5519 -6.2776 -1.5750 18 7 -6.7257 -6.8683 -1.4992 19 14 -5.0136 -5.4712 -3.1717 20 1 -4.2920 -6.4633 -4.0085 21 1 -6.2076 -4.9798 -3.9052 22 1 -4.1132 -4.3294 -2.8705 23 6 3.3127 -2.5498 1.8892 24 6 3.4226 -2.0485 3.1729 25 6 4.4409 -2.4841 4.0001 26 6 5.3540 -3.4150 3.5410 27 6 5.2472 -3.9122 2.2556 28 6 4.2267 -3.4795 1.4297 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9562 -0.8901 35 1 1.6766 1.9564 0.8899 36 1 2.6210 -5.2186 1.4213 37 1 1.6285 -5.7381 0.0381 38 1 2.5608 -4.2246 -0.0540 39 1 -0.1549 -5.8720 1.7821 40 1 -0.8915 -4.3396 2.3085 41 1 -1.5542 -3.8542 -0.0311 42 1 -0.8176 -5.3867 -0.5576 43 1 -2.3700 -6.6384 0.9166 44 1 -3.1061 -5.1056 1.4427 45 1 -3.2131 -5.2213 -1.3768 46 1 -7.3116 -6.8839 -2.2721 47 1 2.7114 -1.3186 3.5302 48 1 4.5246 -2.0953 5.0042 49 1 6.1511 -3.7533 4.1864 50 1 5.9608 -4.6392 1.8968 51 1 4.1430 -3.8683 0.4256 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716589657.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:10 Heat of formation + Delta-G solvation = -35.148062 kcal Electronic energy + Delta-G solvation = -29562.343424 eV Core-core repulsion = 25655.624561 eV Total energy + Delta-G solvation = -3906.718863 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.91411 -39.06716 -38.18097 -36.16221 -35.05527 -33.72452 -32.34697 -31.54594 -31.20974 -30.21322 -27.67218 -27.29705 -27.00947 -24.97171 -23.05593 -22.66166 -21.83385 -21.45472 -21.03385 -19.52878 -17.87497 -17.53258 -17.34574 -16.98752 -16.23315 -15.82665 -15.08281 -15.02427 -14.84866 -14.67194 -14.40727 -14.32783 -14.02541 -13.78745 -13.52053 -13.30727 -13.15491 -12.99486 -12.90230 -12.76832 -12.50014 -12.33283 -12.20172 -12.04842 -11.96985 -11.82347 -11.42845 -11.22077 -11.11401 -10.94662 -10.91071 -10.78485 -10.51236 -10.50523 -10.12451 -9.63982 -9.57082 -9.24076 -8.96101 -8.87258 -8.71374 -7.20700 -5.74597 -3.09839 0.90745 1.07652 2.45724 2.72966 3.25795 3.38543 3.41610 3.46030 3.55389 4.23540 4.31559 4.45190 4.61154 4.64495 4.67646 4.73700 4.78759 4.85834 4.92935 4.99145 5.04882 5.13481 5.17301 5.23722 5.32085 5.40165 5.42550 5.54131 5.54974 5.58896 5.59944 5.63360 5.71450 5.75873 5.80285 5.91798 5.96575 6.02913 6.08144 6.18245 6.19190 6.23611 6.31937 6.44562 6.62065 6.75855 6.78309 6.85860 7.24809 8.01893 8.07550 8.44665 9.23670 9.96221 10.16416 11.43973 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.013636 B = 0.002785 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.880127 B =10051.295636 C =11323.016205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.080 3.920 3 C -0.147 4.147 4 O -0.346 6.346 5 C 0.119 3.881 6 H 0.090 0.910 7 C 0.493 3.507 8 O -0.509 6.509 9 N -0.610 5.610 10 C 0.070 3.930 11 C 0.119 3.881 12 C -0.142 4.142 13 C 0.161 3.839 14 N -0.757 5.757 15 C -0.243 4.243 16 H 0.090 0.910 17 C 0.003 3.997 18 N -0.935 5.935 19 Si 0.885 3.115 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.278 1.278 23 C -0.088 4.088 24 C -0.082 4.082 25 C -0.123 4.123 26 C -0.113 4.113 27 C -0.123 4.123 28 C -0.110 4.110 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.027 0.973 44 H 0.028 0.972 45 H 0.360 0.640 46 H 0.259 0.741 47 H 0.129 0.871 48 H 0.124 0.876 49 H 0.122 0.878 50 H 0.125 0.875 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.502 10.852 6.161 32.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.023 3.977 3 C -0.204 4.204 4 O -0.264 6.264 5 C 0.058 3.942 6 H 0.108 0.892 7 C 0.279 3.721 8 O -0.383 6.383 9 N -0.345 5.345 10 C -0.074 4.074 11 C -0.004 4.004 12 C -0.181 4.181 13 C 0.033 3.967 14 N -0.402 5.402 15 C -0.373 4.373 16 H 0.108 0.892 17 C -0.193 4.193 18 N -0.583 5.583 19 Si 0.716 3.284 20 H -0.211 1.211 21 H -0.217 1.217 22 H -0.204 1.204 23 C -0.089 4.089 24 C -0.100 4.100 25 C -0.141 4.141 26 C -0.131 4.131 27 C -0.141 4.141 28 C -0.128 4.128 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.104 0.896 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.045 0.955 44 H 0.046 0.954 45 H 0.192 0.808 46 H 0.069 0.931 47 H 0.147 0.853 48 H 0.142 0.858 49 H 0.140 0.860 50 H 0.143 0.857 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 29.821 11.179 6.681 32.541 hybrid contribution 0.165 0.284 -1.525 1.560 sum 29.986 11.463 5.156 32.514 Atomic orbital electron populations 1.22361 0.94789 1.03795 1.02153 1.22300 0.94735 0.93710 0.86939 1.21849 1.01443 0.94336 1.02807 1.88015 1.85635 1.16358 1.36346 1.20764 0.91102 0.83532 0.98844 0.89237 1.21081 0.89713 0.82271 0.79066 1.90739 1.38539 1.66021 1.43042 1.47888 1.15057 1.07206 1.64323 1.22268 0.88800 0.97461 0.98821 1.21485 0.83846 0.96690 0.98339 1.22104 0.96649 1.01658 0.97712 1.20514 0.88489 0.96869 0.90839 1.42704 1.18348 1.68847 1.10317 1.19083 0.91312 1.27733 0.99139 0.89177 1.24677 0.96270 1.00604 0.97742 1.69703 1.09670 1.48702 1.30246 0.86524 0.77595 0.79440 0.84872 1.21109 1.21686 1.20389 1.19370 0.95738 0.98703 0.95066 1.21055 0.97749 0.98417 0.92799 1.21198 0.95171 0.97796 0.99887 1.21229 0.98903 0.96959 0.96026 1.21081 0.98214 1.00531 0.94278 1.21156 0.94278 0.97129 1.00194 0.92297 0.91380 0.91486 0.92435 0.92132 0.91076 0.91580 0.91867 0.90571 0.91288 0.90270 0.89574 0.91743 0.92072 0.95489 0.95376 0.80751 0.93081 0.85309 0.85833 0.85972 0.85665 0.85400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.12 8.62 37.16 0.32 -1.80 16 2 C 0.08 0.83 3.34 -26.73 -0.09 0.74 16 3 C -0.15 -1.22 9.56 37.16 0.36 -0.87 16 4 O -0.35 -4.14 8.59 -55.09 -0.47 -4.62 16 5 C 0.12 1.27 2.06 -29.03 -0.06 1.21 16 6 H 0.09 0.77 6.22 -51.93 -0.32 0.44 16 7 C 0.49 6.59 6.43 -10.99 -0.07 6.52 16 8 O -0.51 -8.72 13.63 -14.31 -0.20 -8.92 16 9 N -0.61 -7.17 2.87 -181.57 -0.52 -7.69 16 10 C 0.07 0.55 8.50 59.84 0.51 1.06 16 11 C 0.12 1.58 5.41 -4.04 -0.02 1.56 16 12 C -0.14 -2.28 5.65 -26.74 -0.15 -2.43 16 13 C 0.16 3.22 6.26 -4.04 -0.03 3.19 16 14 N -0.76 -18.83 5.41 -59.91 -0.32 -19.16 16 15 C -0.24 -7.13 10.47 -15.06 -0.16 -7.28 16 16 H 0.09 2.81 8.06 -52.49 -0.42 2.39 16 17 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 18 N -0.94 -30.02 13.97 55.49 0.78 -29.25 16 19 Si 0.89 22.67 27.74 -169.99 -4.71 17.96 16 20 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 21 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 22 H -0.28 -6.76 6.52 56.52 0.37 -6.39 16 23 C -0.09 -0.84 4.52 -104.62 -0.47 -1.31 16 24 C -0.08 -0.82 9.35 -39.58 -0.37 -1.20 16 25 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 26 C -0.11 -0.79 10.05 -39.58 -0.40 -1.19 16 27 C -0.12 -0.81 10.05 -39.58 -0.40 -1.21 16 28 C -0.11 -0.79 6.95 -39.59 -0.27 -1.07 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.07 1.00 5.87 -51.93 -0.30 0.69 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.06 0.51 7.37 -51.93 -0.38 0.13 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.45 6.81 -51.93 -0.35 0.10 16 37 H 0.08 0.55 8.07 -51.93 -0.42 0.13 16 38 H 0.07 0.42 4.32 -51.93 -0.22 0.20 16 39 H 0.08 0.90 8.07 -51.93 -0.42 0.48 16 40 H 0.09 1.29 7.42 -51.93 -0.39 0.90 16 41 H 0.06 1.15 8.14 -51.92 -0.42 0.72 16 42 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.36 8.74 5.53 -40.82 -0.23 8.52 16 46 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 47 H 0.13 1.43 7.77 -52.49 -0.41 1.02 16 48 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 49 H 0.12 0.60 8.06 -52.48 -0.42 0.18 16 50 H 0.13 0.55 8.06 -52.49 -0.42 0.12 16 51 H 0.13 0.64 5.94 -52.49 -0.31 0.33 16 LS Contribution 402.92 15.07 6.07 6.07 Total: -1.00 -35.75 402.92 -9.60 -45.35 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -8.42 Total: 5.73 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: -1.80 Total: -5.48 kcal Atomic # 7 Polarization: -56.02 SS G_CDS: -0.07 Total: -56.09 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -0.67 Total: -13.54 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -4.71 Total: 17.96 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.75 -9.60 -45.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716589657.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.202 kcal (2) G-P(sol) polarization free energy of solvation -35.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds