Wall clock time and date at job start Tue Mar 31 2020 19:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47116 * 2 1 4 4 O 1.42909 * 109.47187 * 119.99212 * 2 1 3 5 5 C 1.42903 * 113.99516 * 90.00246 * 4 2 1 6 6 H 1.09002 * 109.47382 * 30.00095 * 5 4 2 7 7 C 1.50699 * 109.47184 * 270.00097 * 5 4 2 8 8 O 1.21286 * 119.99722 * 355.00184 * 7 5 4 9 9 N 1.34777 * 120.00178 * 175.00129 * 7 5 4 10 10 C 1.46496 * 119.99833 * 0.02562 * 9 7 5 11 11 C 1.46500 * 120.00097 * 179.97438 * 9 7 5 12 12 C 1.52999 * 109.47100 * 90.00394 * 11 9 7 13 13 C 1.52993 * 109.47141 * 180.02562 * 12 11 9 14 14 N 1.46504 * 109.47227 * 179.97438 * 13 12 11 15 15 C 1.36942 * 119.99797 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00250 * 0.02562 * 15 14 13 17 17 C 1.38813 * 119.99303 * 180.02562 * 15 14 13 18 18 N 1.31618 * 119.99717 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 120.00442 * 0.02562 * 17 15 14 20 20 H 1.48494 * 109.47133 * 89.99805 * 19 17 15 21 21 H 1.48502 * 109.47026 * 210.00435 * 19 17 15 22 22 H 1.48500 * 109.46765 * 329.99688 * 19 17 15 23 23 C 1.50701 * 109.46878 * 150.00028 * 5 4 2 24 24 C 1.38242 * 119.99675 * 39.72817 * 23 5 4 25 25 C 1.38235 * 119.99458 * 179.81160 * 24 23 5 26 26 C 1.38236 * 120.00304 * 0.38687 * 25 24 23 27 27 C 1.38242 * 119.99796 * 359.86995 * 26 25 24 28 28 C 1.38230 * 119.99958 * 359.94576 * 27 26 25 29 29 H 1.08997 * 109.47242 * 60.00508 * 1 2 3 30 30 H 1.08996 * 109.46880 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47303 * 300.00384 * 1 2 3 32 32 H 1.08997 * 109.47303 * 239.99616 * 2 1 3 33 33 H 1.08998 * 109.47299 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.46492 * 299.99447 * 3 2 1 35 35 H 1.08997 * 109.47348 * 59.99644 * 3 2 1 36 36 H 1.08997 * 109.47372 * 89.99591 * 10 9 7 37 37 H 1.09003 * 109.47041 * 209.99593 * 10 9 7 38 38 H 1.09002 * 109.47265 * 329.99586 * 10 9 7 39 39 H 1.08999 * 109.47336 * 210.00463 * 11 9 7 40 40 H 1.08999 * 109.47227 * 330.00355 * 11 9 7 41 41 H 1.09008 * 109.46871 * 299.99659 * 12 11 9 42 42 H 1.08995 * 109.47484 * 59.99567 * 12 11 9 43 43 H 1.08999 * 109.47101 * 299.99950 * 13 12 11 44 44 H 1.08999 * 109.47421 * 59.99817 * 13 12 11 45 45 H 0.96996 * 119.99867 * 359.97438 * 14 13 12 46 46 H 0.97000 * 120.00113 * 179.97438 * 18 17 15 47 47 H 1.07997 * 120.00052 * 359.97438 * 24 23 5 48 48 H 1.08000 * 119.99878 * 180.22948 * 25 24 23 49 49 H 1.08004 * 120.00024 * 179.83199 * 26 25 24 50 50 H 1.08000 * 119.99869 * 179.97438 * 27 26 25 51 51 H 1.07999 * 119.99817 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6735 1.1669 5 6 2.2001 -2.0781 0.9888 6 1 2.4629 -2.2799 -0.0496 7 6 0.9287 -2.8087 1.3364 8 8 -0.0177 -2.1982 1.7867 9 7 0.8432 -4.1403 1.1467 10 6 1.9865 -4.8776 0.6033 11 6 -0.3926 -4.8505 1.4851 12 6 -1.3165 -4.8758 0.2658 13 6 -2.6074 -5.6170 0.6194 14 7 -3.4923 -5.6406 -0.5479 15 6 -4.7137 -6.2548 -0.4688 16 1 -5.0248 -6.7213 0.4542 17 6 -5.5519 -6.2776 -1.5750 18 7 -6.7257 -6.8683 -1.4992 19 14 -5.0136 -5.4712 -3.1717 20 1 -4.2920 -6.4633 -4.0085 21 1 -6.2076 -4.9798 -3.9052 22 1 -4.1132 -4.3294 -2.8705 23 6 3.3127 -2.5498 1.8892 24 6 3.4226 -2.0485 3.1729 25 6 4.4409 -2.4841 4.0001 26 6 5.3540 -3.4150 3.5410 27 6 5.2472 -3.9122 2.2556 28 6 4.2267 -3.4795 1.4297 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9562 -0.8901 35 1 1.6766 1.9564 0.8899 36 1 2.6210 -5.2186 1.4213 37 1 1.6285 -5.7381 0.0381 38 1 2.5608 -4.2246 -0.0540 39 1 -0.1549 -5.8720 1.7821 40 1 -0.8915 -4.3396 2.3085 41 1 -1.5542 -3.8542 -0.0311 42 1 -0.8176 -5.3867 -0.5576 43 1 -2.3700 -6.6384 0.9166 44 1 -3.1061 -5.1056 1.4427 45 1 -3.2131 -5.2213 -1.3768 46 1 -7.3116 -6.8839 -2.2721 47 1 2.7114 -1.3186 3.5302 48 1 4.5246 -2.0953 5.0042 49 1 6.1511 -3.7533 4.1864 50 1 5.9608 -4.6392 1.8968 51 1 4.1430 -3.8683 0.4256 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716589657.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:09 Heat of formation + Delta-G solvation = -57.144132 kcal Electronic energy + Delta-G solvation = -29563.297245 eV Core-core repulsion = 25655.624561 eV Total energy + Delta-G solvation = -3907.672684 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.75934 -39.78708 -39.03031 -37.55351 -36.51116 -34.65606 -33.99477 -32.61380 -31.80601 -31.70377 -28.56183 -28.09392 -28.03422 -26.30153 -24.27860 -23.60276 -22.89503 -22.43987 -22.22561 -20.45590 -19.69075 -18.63849 -18.18999 -17.78078 -17.15572 -16.72387 -16.45448 -16.15666 -15.81654 -15.73941 -15.56614 -15.41182 -15.19282 -14.86916 -14.66771 -14.34538 -14.10971 -13.99595 -13.87906 -13.69577 -13.59467 -13.48827 -13.13370 -13.02836 -12.84602 -12.81930 -12.71911 -12.59398 -12.50387 -12.09097 -12.03295 -11.87678 -11.84171 -11.77638 -11.68131 -11.43661 -11.01339 -10.49490 -9.86229 -9.65164 -9.62618 -9.35414 -8.06624 -5.41194 0.31785 0.50617 1.34145 1.38702 1.46025 1.50473 1.83996 2.45145 2.54989 2.90298 3.24172 3.45472 3.56255 3.62054 3.76299 3.93910 3.99575 4.09322 4.13137 4.15570 4.17521 4.22031 4.24266 4.34286 4.38506 4.54816 4.58965 4.62662 4.66752 4.69153 4.72043 4.80234 4.84785 4.86399 4.88620 4.92144 5.01631 5.15368 5.19669 5.23256 5.24260 5.33090 5.49322 5.54187 5.58238 5.63500 5.70836 6.04550 6.08962 6.17381 6.35846 7.02951 7.11650 7.78531 7.98391 9.14933 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.013636 B = 0.002785 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.880127 B =10051.295636 C =11323.016205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.076 3.924 3 C -0.142 4.142 4 O -0.365 6.365 5 C 0.123 3.877 6 H 0.117 0.883 7 C 0.485 3.515 8 O -0.560 6.560 9 N -0.607 5.607 10 C 0.061 3.939 11 C 0.125 3.875 12 C -0.123 4.123 13 C 0.157 3.843 14 N -0.760 5.760 15 C -0.241 4.241 16 H 0.056 0.944 17 C -0.065 4.065 18 N -0.983 5.983 19 Si 0.960 3.040 20 H -0.270 1.270 21 H -0.294 1.294 22 H -0.258 1.258 23 C -0.102 4.102 24 C -0.108 4.108 25 C -0.133 4.133 26 C -0.114 4.114 27 C -0.120 4.120 28 C -0.105 4.105 29 H 0.074 0.926 30 H 0.040 0.960 31 H 0.044 0.956 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.053 0.947 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.106 0.894 40 H 0.061 0.939 41 H 0.043 0.957 42 H 0.080 0.920 43 H 0.038 0.962 44 H 0.013 0.987 45 H 0.365 0.635 46 H 0.259 0.741 47 H 0.102 0.898 48 H 0.132 0.868 49 H 0.145 0.855 50 H 0.156 0.844 51 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.661 10.445 4.151 36.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.019 3.981 3 C -0.199 4.199 4 O -0.283 6.283 5 C 0.062 3.938 6 H 0.134 0.866 7 C 0.273 3.727 8 O -0.438 6.438 9 N -0.340 5.340 10 C -0.080 4.080 11 C 0.002 3.998 12 C -0.162 4.162 13 C 0.031 3.969 14 N -0.406 5.406 15 C -0.372 4.372 16 H 0.074 0.926 17 C -0.256 4.256 18 N -0.633 5.633 19 Si 0.787 3.213 20 H -0.196 1.196 21 H -0.220 1.220 22 H -0.183 1.183 23 C -0.102 4.102 24 C -0.126 4.126 25 C -0.151 4.151 26 C -0.132 4.132 27 C -0.137 4.137 28 C -0.123 4.123 29 H 0.093 0.907 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.107 0.893 35 H 0.072 0.928 36 H 0.094 0.906 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.124 0.876 40 H 0.080 0.920 41 H 0.062 0.938 42 H 0.098 0.902 43 H 0.056 0.944 44 H 0.031 0.969 45 H 0.199 0.801 46 H 0.068 0.932 47 H 0.120 0.880 48 H 0.150 0.850 49 H 0.163 0.837 50 H 0.173 0.827 51 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 34.055 10.763 4.686 36.022 hybrid contribution -1.120 0.355 -0.755 1.397 sum 32.935 11.117 3.931 34.982 Atomic orbital electron populations 1.22315 0.96688 1.01819 1.01838 1.22456 0.93229 0.95096 0.87320 1.21835 1.02032 0.92980 1.03091 1.88020 1.85456 1.17297 1.37529 1.20861 0.89927 0.82585 1.00441 0.86611 1.21744 0.90116 0.82700 0.78162 1.90715 1.40473 1.67242 1.45409 1.47956 1.15360 1.06959 1.63769 1.22595 0.87741 0.97986 0.99720 1.21297 0.84324 0.97970 0.96248 1.21898 0.95130 0.99772 0.99423 1.20670 0.89499 0.97865 0.88909 1.42723 1.17546 1.68374 1.11952 1.19062 0.93035 1.27166 0.97888 0.92627 1.25572 0.96317 1.01795 1.01963 1.69890 1.11248 1.50679 1.31517 0.85337 0.77380 0.79053 0.79577 1.19575 1.22020 1.18259 1.19387 0.96258 0.99955 0.94633 1.21006 0.98450 0.99156 0.93998 1.21363 0.95135 0.98389 1.00206 1.21567 0.98793 0.96042 0.96810 1.21484 0.98153 1.00334 0.93769 1.21439 0.93437 0.95947 1.01478 0.90679 0.94102 0.93648 0.90338 0.91092 0.89311 0.92790 0.90619 0.89230 0.89093 0.87603 0.92048 0.93843 0.90168 0.94371 0.96865 0.80148 0.93177 0.87993 0.85046 0.83692 0.82668 0.82655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.23 8.62 71.98 0.62 -3.61 16 2 C 0.08 1.52 3.34 30.59 0.10 1.62 16 3 C -0.14 -2.20 9.56 71.98 0.69 -1.52 16 4 O -0.37 -8.79 8.59 -129.99 -1.12 -9.91 16 5 C 0.12 2.49 2.06 29.10 0.06 2.55 16 6 H 0.12 1.63 6.22 -2.39 -0.01 1.62 16 7 C 0.48 12.91 6.43 87.66 0.56 13.48 16 8 O -0.56 -20.28 13.63 15.94 0.22 -20.07 16 9 N -0.61 -13.28 2.87 -846.76 -2.43 -15.72 16 10 C 0.06 0.73 8.50 127.77 1.09 1.82 16 11 C 0.12 3.21 5.41 86.38 0.47 3.68 16 12 C -0.12 -3.80 5.65 30.59 0.17 -3.63 16 13 C 0.16 6.27 6.26 86.38 0.54 6.81 16 14 N -0.76 -37.52 5.41 -343.45 -1.86 -39.37 16 15 C -0.24 -14.37 10.47 84.03 0.88 -13.49 16 16 H 0.06 3.62 8.06 -2.91 -0.02 3.60 16 17 C -0.07 -3.95 5.50 84.86 0.47 -3.49 16 18 N -0.98 -64.50 13.97 21.65 0.30 -64.20 16 19 Si 0.96 46.58 27.74 68.60 1.90 48.49 16 20 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 21 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 22 H -0.26 -11.52 6.52 99.48 0.65 -10.87 16 23 C -0.10 -1.78 4.52 -19.86 -0.09 -1.87 16 24 C -0.11 -2.19 9.35 22.27 0.21 -1.98 16 25 C -0.13 -2.06 10.05 22.27 0.22 -1.84 16 26 C -0.11 -1.27 10.05 22.27 0.22 -1.04 16 27 C -0.12 -1.08 10.05 22.27 0.22 -0.86 16 28 C -0.11 -1.13 6.95 22.27 0.15 -0.98 16 29 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.04 1.24 5.87 -2.39 -0.01 1.23 16 31 H 0.04 1.28 8.14 -2.39 -0.02 1.27 16 32 H 0.08 1.22 7.37 -2.39 -0.02 1.20 16 33 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.05 0.95 8.14 -2.39 -0.02 0.94 16 36 H 0.08 0.76 6.81 -2.39 -0.02 0.75 16 37 H 0.09 0.89 8.07 -2.39 -0.02 0.87 16 38 H 0.09 0.69 4.32 -2.39 -0.01 0.68 16 39 H 0.11 2.15 8.07 -2.39 -0.02 2.13 16 40 H 0.06 1.89 7.42 -2.39 -0.02 1.88 16 41 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 42 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 45 H 0.37 17.12 5.53 -92.71 -0.51 16.61 16 46 H 0.26 16.10 8.31 -92.71 -0.77 15.33 16 47 H 0.10 2.51 7.77 -2.91 -0.02 2.49 16 48 H 0.13 1.66 8.06 -2.91 -0.02 1.64 16 49 H 0.15 0.90 8.06 -2.91 -0.02 0.88 16 50 H 0.16 0.50 8.06 -2.91 -0.02 0.47 16 51 H 0.16 0.74 5.94 -2.91 -0.02 0.72 16 Total: -1.00 -81.90 402.92 3.95 -77.95 By element: Atomic # 1 Polarization: 26.84 SS G_CDS: 0.34 Total: 27.18 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: 6.59 Total: -4.35 kcal Atomic # 7 Polarization: -115.30 SS G_CDS: -3.99 Total: -119.29 kcal Atomic # 8 Polarization: -29.08 SS G_CDS: -0.90 Total: -29.98 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 1.90 Total: 48.49 kcal Total: -81.90 3.95 -77.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716589657.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.805 kcal (2) G-P(sol) polarization free energy of solvation -81.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds