Wall clock time and date at job start Tue Mar 31 2020 19:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 O 1.42903 * 109.46714 * 3.33713 * 3 2 1 5 5 C 1.42902 * 113.99607 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.47178 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.47208 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99803 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99675 * 180.27843 * 7 6 5 10 10 C 1.46921 * 120.63392 * 359.43977 * 9 7 6 11 11 C 1.53624 * 108.54016 * 126.36873 * 10 9 7 12 12 C 1.53041 * 109.23819 * 54.86424 * 11 10 9 13 13 C 1.53004 * 109.45947 * 178.48679 * 12 11 10 14 14 H 1.09011 * 110.63873 * 59.36134 * 13 12 11 15 15 C 1.55154 * 110.72269 * 182.50191 * 13 12 11 16 16 C 1.55120 * 101.48397 * 153.73229 * 15 13 12 17 17 N 1.47422 * 104.94479 * 323.22797 * 16 15 13 18 18 C 1.36944 * 125.64627 * 204.03905 * 17 16 15 19 19 H 1.08001 * 119.99443 * 179.97438 * 18 17 16 20 20 C 1.38809 * 119.99919 * 359.95300 * 18 17 16 21 21 N 1.31617 * 120.00274 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99811 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.46970 * 60.00421 * 22 20 18 24 24 H 1.48500 * 109.47011 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47143 * 300.00234 * 22 20 18 26 26 C 1.47020 * 108.70550 * 24.00337 * 17 16 15 27 27 C 1.53037 * 109.53606 * 298.50541 * 12 11 10 28 28 C 1.46924 * 120.62813 * 179.72946 * 9 7 6 29 29 H 4.38443 * 5.44330 * 179.97438 * 4 1 2 30 30 H 1.09000 * 109.47152 * 243.34488 * 3 2 1 31 31 H 1.08998 * 109.47403 * 123.33580 * 3 2 1 32 32 H 1.09000 * 109.47600 * 60.00025 * 5 4 3 33 33 H 1.08998 * 109.47515 * 300.00001 * 5 4 3 34 34 H 1.09009 * 109.46730 * 59.99802 * 6 5 4 35 35 H 1.08998 * 109.46846 * 300.00347 * 6 5 4 36 36 H 1.09000 * 109.59076 * 246.20663 * 10 9 7 37 37 H 1.09000 * 109.58577 * 6.63206 * 10 9 7 38 38 H 1.08990 * 109.63928 * 294.86618 * 11 10 9 39 39 H 1.09006 * 109.45894 * 174.74079 * 11 10 9 40 40 H 1.08996 * 109.45315 * 58.52100 * 12 11 10 41 41 H 1.08992 * 111.01035 * 271.94277 * 15 13 12 42 42 H 1.09004 * 111.00145 * 35.79552 * 15 13 12 43 43 H 1.09003 * 110.41994 * 204.29619 * 16 15 13 44 44 H 1.09002 * 110.29986 * 82.09933 * 16 15 13 45 45 H 0.96996 * 119.99797 * 179.97438 * 21 20 18 46 46 H 1.09003 * 109.87874 * 239.52363 * 26 17 16 47 47 H 1.09001 * 110.01260 * 118.43055 * 26 17 16 48 48 H 1.09008 * 109.50055 * 301.41274 * 27 12 11 49 49 H 1.08995 * 109.52388 * 181.33998 * 27 12 11 50 50 H 1.09006 * 109.58932 * 353.36359 * 28 9 7 51 51 H 1.08998 * 109.59450 * 113.65039 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1229 -1.3442 -0.0784 5 6 4.5475 -1.4562 -0.0844 6 6 4.9427 -2.9318 -0.1712 7 6 6.4450 -3.0499 -0.1781 8 8 7.1320 -2.0521 -0.1199 9 7 7.0251 -4.2640 -0.2552 10 6 6.2063 -5.4822 -0.3206 11 6 6.6412 -6.2978 -1.5477 12 6 8.1477 -6.5569 -1.4729 13 6 8.5799 -7.4011 -2.6734 14 1 8.3464 -6.8893 -3.6071 15 6 10.0931 -7.7346 -2.5938 16 6 10.1615 -9.0552 -3.4046 17 7 8.9172 -9.7716 -3.0700 18 6 8.7287 -11.1254 -3.1531 19 1 7.7754 -11.5554 -2.8835 20 6 9.7628 -11.9450 -3.5841 21 7 10.9246 -11.4209 -3.9125 22 14 9.5055 -13.7917 -3.6981 23 1 8.4001 -14.0798 -4.6470 24 1 10.7532 -14.4365 -4.1804 25 1 9.1587 -14.3269 -2.3570 26 6 7.9124 -8.7919 -2.6316 27 6 8.8979 -5.2231 -1.4909 28 6 8.4884 -4.3949 -0.2689 29 1 -1.0498 -0.0003 0.0002 30 1 3.0091 0.4618 0.9184 31 1 3.0091 0.5655 -0.8585 32 1 4.9498 -1.0253 0.8324 33 1 4.9504 -0.9214 -0.9445 34 1 4.5404 -3.3623 -1.0883 35 1 4.5397 -3.4670 0.6886 36 1 6.3545 -6.0712 0.5844 37 1 5.1547 -5.2110 -0.4144 38 1 6.4123 -5.7419 -2.4569 39 1 6.1087 -7.2488 -1.5590 40 1 8.3788 -7.0910 -0.5513 41 1 10.6907 -6.9532 -3.0632 42 1 10.4040 -7.8949 -1.5614 43 1 11.0296 -9.6418 -3.1037 44 1 10.2007 -8.8416 -4.4727 45 1 11.6473 -11.9937 -4.2134 46 1 7.5924 -9.0190 -1.6146 47 1 7.0542 -8.8116 -3.3033 48 1 8.6478 -4.6773 -2.4008 49 1 9.9715 -5.4086 -1.4616 50 1 8.9433 -3.4061 -0.3287 51 1 8.8193 -4.8949 0.6414 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716703574.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:30 Heat of formation + Delta-G solvation = -9.284221 kcal Electronic energy + Delta-G solvation = -28451.360409 eV Core-core repulsion = 24545.763087 eV Total energy + Delta-G solvation = -3905.597323 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.51905 -38.76671 -38.22004 -36.62803 -33.95692 -33.76192 -32.33262 -31.63060 -30.92672 -29.19238 -27.76470 -27.36123 -25.44536 -24.18608 -23.68491 -22.81301 -20.90979 -19.99459 -19.39044 -19.24235 -18.70166 -17.80021 -16.87534 -16.81738 -16.50889 -15.91905 -15.62490 -15.30434 -14.97709 -14.52473 -14.26105 -14.14393 -14.06659 -13.69029 -13.44866 -13.10554 -13.03808 -12.82025 -12.46846 -12.32821 -12.07437 -11.81922 -11.72298 -11.58040 -11.34896 -11.18249 -11.03069 -10.96250 -10.90309 -10.87575 -10.76604 -10.50074 -10.13181 -10.07736 -9.99378 -9.85984 -9.78547 -9.69859 -9.42935 -8.79232 -8.62221 -6.79889 -5.63029 -3.04522 2.01674 2.37016 2.37726 2.73982 3.40750 3.44865 3.46331 3.48248 4.05607 4.31749 4.50004 4.59486 4.63123 4.71881 4.80042 4.81043 4.86693 4.93643 5.01502 5.07977 5.17973 5.30774 5.37734 5.39666 5.43915 5.47766 5.48119 5.55271 5.66351 5.68396 5.70471 5.86209 5.89602 5.95404 6.03321 6.16785 6.18494 6.39526 6.41982 6.45789 6.63715 6.65559 6.67334 6.81715 7.02288 7.12625 7.17656 7.55678 7.64951 7.89035 7.91374 8.39645 9.24786 9.86208 10.51879 11.40589 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.022113 B = 0.001846 C = 0.001736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.923555 B =15162.015768 C =16121.851089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.194 4.194 3 C 0.174 3.826 4 O -0.386 6.386 5 C 0.078 3.922 6 C -0.140 4.140 7 C 0.520 3.480 8 O -0.549 6.549 9 N -0.607 5.607 10 C 0.104 3.896 11 C -0.131 4.131 12 C -0.074 4.074 13 C -0.094 4.094 14 H 0.067 0.933 15 C -0.138 4.138 16 C 0.151 3.849 17 N -0.605 5.605 18 C -0.222 4.222 19 H 0.076 0.924 20 C -0.012 4.012 21 N -0.923 5.923 22 Si 0.914 3.086 23 H -0.286 1.286 24 H -0.290 1.290 25 H -0.285 1.285 26 C 0.143 3.857 27 C -0.127 4.127 28 C 0.111 3.889 29 H 0.222 0.778 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.066 0.934 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.055 0.945 42 H 0.058 0.942 43 H 0.104 0.896 44 H 0.009 0.991 45 H 0.252 0.748 46 H 0.021 0.979 47 H 0.016 0.984 48 H 0.064 0.936 49 H 0.079 0.921 50 H 0.090 0.910 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.522 21.354 9.181 26.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.194 4.194 3 C 0.099 3.901 4 O -0.306 6.306 5 C 0.002 3.998 6 C -0.180 4.180 7 C 0.309 3.691 8 O -0.427 6.427 9 N -0.340 5.340 10 C -0.019 4.019 11 C -0.169 4.169 12 C -0.093 4.093 13 C -0.113 4.113 14 H 0.085 0.915 15 C -0.177 4.177 16 C 0.026 3.974 17 N -0.331 5.331 18 C -0.351 4.351 19 H 0.094 0.906 20 C -0.208 4.208 21 N -0.571 5.571 22 Si 0.744 3.256 23 H -0.213 1.213 24 H -0.216 1.216 25 H -0.212 1.212 26 C 0.017 3.983 27 C -0.165 4.165 28 C -0.011 4.011 29 H 0.239 0.761 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.091 0.909 37 H 0.103 0.897 38 H 0.085 0.915 39 H 0.100 0.900 40 H 0.091 0.909 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.122 0.878 44 H 0.027 0.973 45 H 0.062 0.938 46 H 0.039 0.961 47 H 0.034 0.966 48 H 0.083 0.917 49 H 0.098 0.902 50 H 0.108 0.892 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -13.141 21.513 9.136 26.814 hybrid contribution -0.251 -0.920 -0.205 0.976 sum -13.392 20.593 8.931 26.138 Atomic orbital electron populations 1.24997 0.95918 0.97442 1.00776 1.22557 0.93911 1.02231 1.00710 1.19048 0.84639 0.84694 1.01749 1.87873 1.21702 1.25569 1.95459 1.22167 0.79745 0.95838 1.02085 1.21499 0.92813 0.97870 1.05795 1.20317 0.89973 0.82919 0.75935 1.90697 1.65348 1.36054 1.50618 1.48134 1.07549 1.05971 1.72347 1.21978 0.94920 0.85549 0.99453 1.22084 0.97101 1.00370 0.97348 1.21137 0.93710 0.95095 0.99344 1.22172 0.97025 0.95452 0.96621 0.91471 1.23068 0.94111 0.99693 1.00831 1.21947 0.92339 0.88639 0.94443 1.44504 1.09109 1.01968 1.77504 1.19036 0.97677 0.80844 1.37520 0.90644 1.24784 0.96080 0.98205 1.01684 1.69799 1.03016 1.33108 1.51202 0.86169 0.76771 0.84891 0.77756 1.21267 1.21578 1.21201 1.21299 0.92302 0.88090 0.96604 1.21966 1.01057 0.95813 0.97673 1.21672 0.79082 1.01714 0.98625 0.76123 0.90630 0.90593 0.92018 0.91975 0.87773 0.87913 0.90882 0.89674 0.91496 0.90001 0.90888 0.92637 0.92294 0.87805 0.97330 0.93751 0.96088 0.96589 0.91692 0.90205 0.89163 0.91416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.24 19.25 29.55 0.57 -0.67 16 2 C -0.19 -1.67 13.73 -37.12 -0.51 -2.18 16 3 C 0.17 1.30 6.41 34.37 0.22 1.52 16 4 O -0.39 -3.62 10.30 -35.23 -0.36 -3.98 16 5 C 0.08 0.67 5.23 37.16 0.19 0.86 16 6 C -0.14 -1.14 4.41 -27.88 -0.12 -1.26 16 7 C 0.52 5.66 7.70 -10.98 -0.08 5.58 16 8 O -0.55 -7.72 15.40 5.55 0.09 -7.63 16 9 N -0.61 -6.19 2.97 -172.51 -0.51 -6.70 16 10 C 0.10 0.89 6.37 -3.49 -0.02 0.87 16 11 C -0.13 -1.38 5.22 -26.39 -0.14 -1.51 16 12 C -0.07 -0.93 1.53 -90.58 -0.14 -1.06 16 13 C -0.09 -1.53 2.48 -88.79 -0.22 -1.75 16 14 H 0.07 1.10 8.14 -51.92 -0.42 0.68 16 15 C -0.14 -2.53 5.51 -24.47 -0.13 -2.67 16 16 C 0.15 3.67 5.89 -2.42 -0.01 3.66 16 17 N -0.60 -15.47 3.40 -169.94 -0.58 -16.05 16 18 C -0.22 -6.21 10.27 -15.06 -0.15 -6.37 16 19 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 20 C -0.01 -0.34 5.49 -17.43 -0.10 -0.44 16 21 N -0.92 -26.99 10.09 55.49 0.56 -26.43 16 22 Si 0.91 22.08 29.55 -169.99 -5.02 17.05 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 26 C 0.14 2.89 5.88 -3.07 -0.02 2.87 16 27 C -0.13 -1.44 5.19 -26.61 -0.14 -1.57 16 28 C 0.11 1.18 6.43 -3.71 -0.02 1.16 16 29 H 0.22 0.74 7.80 -54.10 -0.42 0.32 16 30 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 33 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 34 H 0.10 0.76 7.70 -51.92 -0.40 0.36 16 35 H 0.10 0.70 7.93 -51.93 -0.41 0.29 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.56 5.93 -51.93 -0.31 0.26 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 0.88 7.27 -51.93 -0.38 0.51 16 40 H 0.07 0.96 8.12 -51.93 -0.42 0.54 16 41 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 42 H 0.06 1.07 8.05 -51.93 -0.42 0.65 16 43 H 0.10 2.84 5.87 -51.93 -0.30 2.54 16 44 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 45 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 46 H 0.02 0.42 7.67 -51.93 -0.40 0.02 16 47 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 49 H 0.08 0.91 7.27 -51.93 -0.38 0.53 16 50 H 0.09 1.04 7.01 -51.93 -0.36 0.68 16 51 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 404.33 15.07 6.09 6.09 Total: -1.00 -33.39 404.33 -9.38 -42.77 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -8.81 Total: -2.14 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: -0.83 Total: -2.98 kcal Atomic # 7 Polarization: -48.66 SS G_CDS: -0.53 Total: -49.19 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: -0.28 Total: -11.61 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.39 -9.38 -42.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716703574.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.490 kcal (2) G-P(sol) polarization free energy of solvation -33.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds