Wall clock time and date at job start Tue Mar 31 2020 19:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 O 1.42903 * 109.46714 * 3.33713 * 3 2 1 5 5 C 1.42902 * 113.99607 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.47178 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.47208 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99803 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99675 * 180.27843 * 7 6 5 10 10 C 1.46921 * 120.63392 * 359.43977 * 9 7 6 11 11 C 1.53624 * 108.54016 * 126.36873 * 10 9 7 12 12 C 1.53041 * 109.23819 * 54.86424 * 11 10 9 13 13 C 1.53004 * 109.45947 * 178.48679 * 12 11 10 14 14 H 1.09011 * 110.63873 * 59.36134 * 13 12 11 15 15 C 1.55154 * 110.72269 * 182.50191 * 13 12 11 16 16 C 1.55120 * 101.48397 * 153.73229 * 15 13 12 17 17 N 1.47422 * 104.94479 * 323.22797 * 16 15 13 18 18 C 1.36944 * 125.64627 * 204.03905 * 17 16 15 19 19 H 1.08001 * 119.99443 * 179.97438 * 18 17 16 20 20 C 1.38809 * 119.99919 * 359.95300 * 18 17 16 21 21 N 1.31617 * 120.00274 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99811 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.46970 * 60.00421 * 22 20 18 24 24 H 1.48500 * 109.47011 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47143 * 300.00234 * 22 20 18 26 26 C 1.47020 * 108.70550 * 24.00337 * 17 16 15 27 27 C 1.53037 * 109.53606 * 298.50541 * 12 11 10 28 28 C 1.46924 * 120.62813 * 179.72946 * 9 7 6 29 29 H 4.38443 * 5.44330 * 179.97438 * 4 1 2 30 30 H 1.09000 * 109.47152 * 243.34488 * 3 2 1 31 31 H 1.08998 * 109.47403 * 123.33580 * 3 2 1 32 32 H 1.09000 * 109.47600 * 60.00025 * 5 4 3 33 33 H 1.08998 * 109.47515 * 300.00001 * 5 4 3 34 34 H 1.09009 * 109.46730 * 59.99802 * 6 5 4 35 35 H 1.08998 * 109.46846 * 300.00347 * 6 5 4 36 36 H 1.09000 * 109.59076 * 246.20663 * 10 9 7 37 37 H 1.09000 * 109.58577 * 6.63206 * 10 9 7 38 38 H 1.08990 * 109.63928 * 294.86618 * 11 10 9 39 39 H 1.09006 * 109.45894 * 174.74079 * 11 10 9 40 40 H 1.08996 * 109.45315 * 58.52100 * 12 11 10 41 41 H 1.08992 * 111.01035 * 271.94277 * 15 13 12 42 42 H 1.09004 * 111.00145 * 35.79552 * 15 13 12 43 43 H 1.09003 * 110.41994 * 204.29619 * 16 15 13 44 44 H 1.09002 * 110.29986 * 82.09933 * 16 15 13 45 45 H 0.96996 * 119.99797 * 179.97438 * 21 20 18 46 46 H 1.09003 * 109.87874 * 239.52363 * 26 17 16 47 47 H 1.09001 * 110.01260 * 118.43055 * 26 17 16 48 48 H 1.09008 * 109.50055 * 301.41274 * 27 12 11 49 49 H 1.08995 * 109.52388 * 181.33998 * 27 12 11 50 50 H 1.09006 * 109.58932 * 353.36359 * 28 9 7 51 51 H 1.08998 * 109.59450 * 113.65039 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1229 -1.3442 -0.0784 5 6 4.5475 -1.4562 -0.0844 6 6 4.9427 -2.9318 -0.1712 7 6 6.4450 -3.0499 -0.1781 8 8 7.1320 -2.0521 -0.1199 9 7 7.0251 -4.2640 -0.2552 10 6 6.2063 -5.4822 -0.3206 11 6 6.6412 -6.2978 -1.5477 12 6 8.1477 -6.5569 -1.4729 13 6 8.5799 -7.4011 -2.6734 14 1 8.3464 -6.8893 -3.6071 15 6 10.0931 -7.7346 -2.5938 16 6 10.1615 -9.0552 -3.4046 17 7 8.9172 -9.7716 -3.0700 18 6 8.7287 -11.1254 -3.1531 19 1 7.7754 -11.5554 -2.8835 20 6 9.7628 -11.9450 -3.5841 21 7 10.9246 -11.4209 -3.9125 22 14 9.5055 -13.7917 -3.6981 23 1 8.4001 -14.0798 -4.6470 24 1 10.7532 -14.4365 -4.1804 25 1 9.1587 -14.3269 -2.3570 26 6 7.9124 -8.7919 -2.6316 27 6 8.8979 -5.2231 -1.4909 28 6 8.4884 -4.3949 -0.2689 29 1 -1.0498 -0.0003 0.0002 30 1 3.0091 0.4618 0.9184 31 1 3.0091 0.5655 -0.8585 32 1 4.9498 -1.0253 0.8324 33 1 4.9504 -0.9214 -0.9445 34 1 4.5404 -3.3623 -1.0883 35 1 4.5397 -3.4670 0.6886 36 1 6.3545 -6.0712 0.5844 37 1 5.1547 -5.2110 -0.4144 38 1 6.4123 -5.7419 -2.4569 39 1 6.1087 -7.2488 -1.5590 40 1 8.3788 -7.0910 -0.5513 41 1 10.6907 -6.9532 -3.0632 42 1 10.4040 -7.8949 -1.5614 43 1 11.0296 -9.6418 -3.1037 44 1 10.2007 -8.8416 -4.4727 45 1 11.6473 -11.9937 -4.2134 46 1 7.5924 -9.0190 -1.6146 47 1 7.0542 -8.8116 -3.3033 48 1 8.6478 -4.6773 -2.4008 49 1 9.9715 -5.4086 -1.4616 50 1 8.9433 -3.4061 -0.3287 51 1 8.8193 -4.8949 0.6414 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716703574.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:29 Heat of formation + Delta-G solvation = -28.598793 kcal Electronic energy + Delta-G solvation = -28452.197952 eV Core-core repulsion = 24545.763087 eV Total energy + Delta-G solvation = -3906.434865 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.37129 -39.85320 -39.04065 -37.89865 -35.24422 -34.47589 -33.57598 -32.77055 -31.75990 -30.87863 -29.19269 -28.01409 -26.92453 -25.45408 -24.62163 -23.76474 -21.91842 -21.79006 -20.73876 -19.99759 -19.28409 -18.85036 -18.52333 -17.47737 -17.28619 -16.83224 -16.64441 -16.44685 -16.12767 -15.82882 -15.69223 -15.09304 -14.92920 -14.78110 -14.44019 -14.16240 -14.12547 -13.94181 -13.65286 -13.39907 -13.26695 -13.18946 -12.90324 -12.71455 -12.66505 -12.49048 -12.41246 -12.17400 -12.12898 -12.02740 -11.80710 -11.54869 -11.52894 -11.45397 -11.31214 -11.11010 -11.04209 -10.78466 -10.70448 -10.57357 -9.63664 -8.84886 -7.75233 -5.19409 1.43605 1.46503 1.49767 1.56182 1.57350 1.82249 2.00744 2.51084 2.89908 3.33665 3.51043 3.64303 3.69954 3.75598 3.81390 3.92286 4.03318 4.10307 4.17745 4.24276 4.30480 4.34021 4.44057 4.44368 4.48000 4.49276 4.55414 4.65008 4.75027 4.78429 4.81766 4.87273 4.88032 4.92651 4.98843 5.01921 5.03463 5.12161 5.17276 5.22614 5.30497 5.44490 5.47499 5.60201 5.60658 5.71004 5.85944 6.06401 6.34027 6.39587 6.59743 7.11061 7.13283 7.82520 8.46704 9.26311 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.022113 B = 0.001846 C = 0.001736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.923555 B =15162.015768 C =16121.851089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.239 4.239 3 C 0.168 3.832 4 O -0.401 6.401 5 C 0.081 3.919 6 C -0.134 4.134 7 C 0.518 3.482 8 O -0.586 6.586 9 N -0.607 5.607 10 C 0.106 3.894 11 C -0.128 4.128 12 C -0.065 4.065 13 C -0.078 4.078 14 H 0.069 0.931 15 C -0.122 4.122 16 C 0.150 3.850 17 N -0.629 5.629 18 C -0.239 4.239 19 H 0.081 0.919 20 C -0.070 4.070 21 N -0.950 5.950 22 Si 0.980 3.020 23 H -0.279 1.279 24 H -0.294 1.294 25 H -0.275 1.275 26 C 0.139 3.861 27 C -0.119 4.119 28 C 0.113 3.887 29 H 0.252 0.748 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.117 0.883 35 H 0.121 0.879 36 H 0.084 0.916 37 H 0.110 0.890 38 H 0.066 0.934 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.063 0.937 43 H 0.069 0.931 44 H -0.021 1.021 45 H 0.246 0.754 46 H 0.031 0.969 47 H 0.016 0.984 48 H 0.060 0.940 49 H 0.080 0.920 50 H 0.079 0.921 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.646 21.961 10.345 28.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.239 4.239 3 C 0.092 3.908 4 O -0.321 6.321 5 C 0.004 3.996 6 C -0.173 4.173 7 C 0.308 3.692 8 O -0.467 6.467 9 N -0.339 5.339 10 C -0.015 4.015 11 C -0.166 4.166 12 C -0.084 4.084 13 C -0.097 4.097 14 H 0.087 0.913 15 C -0.161 4.161 16 C 0.025 3.975 17 N -0.355 5.355 18 C -0.368 4.368 19 H 0.099 0.901 20 C -0.262 4.262 21 N -0.600 5.600 22 Si 0.808 3.192 23 H -0.205 1.205 24 H -0.220 1.220 25 H -0.201 1.201 26 C 0.014 3.986 27 C -0.157 4.157 28 C -0.009 4.009 29 H 0.269 0.731 30 H 0.106 0.894 31 H 0.104 0.896 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.135 0.865 35 H 0.139 0.861 36 H 0.103 0.897 37 H 0.129 0.871 38 H 0.085 0.915 39 H 0.100 0.900 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.082 0.918 43 H 0.087 0.913 44 H -0.003 1.003 45 H 0.055 0.945 46 H 0.049 0.951 47 H 0.034 0.966 48 H 0.079 0.921 49 H 0.098 0.902 50 H 0.098 0.902 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.302 22.127 10.314 28.812 hybrid contribution 0.358 -1.096 -0.593 1.296 sum -14.943 21.031 9.721 27.570 Atomic orbital electron populations 1.25860 0.96849 0.95860 0.99377 1.23102 0.94896 1.03745 1.02137 1.19232 0.84502 0.84108 1.02912 1.87832 1.21901 1.26788 1.95570 1.22120 0.79510 0.96191 1.01782 1.21484 0.90711 0.97910 1.07208 1.20758 0.90942 0.82461 0.75034 1.90683 1.66374 1.37283 1.52372 1.48221 1.07481 1.06426 1.71770 1.22087 0.95955 0.84637 0.98855 1.22040 0.95318 1.00795 0.98467 1.21038 0.95455 0.94810 0.97105 1.22078 0.94900 0.94008 0.98717 0.91281 1.22897 0.96197 0.96929 1.00052 1.21758 0.91040 0.91055 0.93611 1.44848 1.10809 1.02244 1.77578 1.19451 0.97882 0.82469 1.37010 0.90130 1.25649 0.95978 1.02618 1.02004 1.70072 1.03612 1.34180 1.52148 0.85132 0.76430 0.79609 0.78042 1.20537 1.22040 1.20128 1.21502 0.91496 0.88969 0.96609 1.21871 1.00933 0.95038 0.97887 1.21596 0.79640 1.01023 0.98625 0.73140 0.89373 0.89553 0.92218 0.92535 0.86474 0.86085 0.89728 0.87149 0.91520 0.90014 0.90990 0.90425 0.91787 0.91337 1.00295 0.94476 0.95139 0.96575 0.92150 0.90154 0.90229 0.90385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 19.25 74.32 1.43 -0.60 16 2 C -0.24 -3.87 13.73 31.13 0.43 -3.44 16 3 C 0.17 2.36 6.41 70.18 0.45 2.81 16 4 O -0.40 -7.00 10.30 -148.98 -1.53 -8.53 16 5 C 0.08 1.27 5.23 71.98 0.38 1.65 16 6 C -0.13 -1.85 4.41 29.85 0.13 -1.72 16 7 C 0.52 10.29 7.70 87.66 0.67 10.96 16 8 O -0.59 -15.98 15.40 -3.04 -0.05 -16.02 16 9 N -0.61 -10.85 2.97 -818.07 -2.43 -13.28 16 10 C 0.11 1.46 6.37 86.51 0.55 2.01 16 11 C -0.13 -2.32 5.22 30.82 0.16 -2.16 16 12 C -0.07 -1.48 1.53 -10.77 -0.02 -1.49 16 13 C -0.08 -2.44 2.48 -9.61 -0.02 -2.46 16 14 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 15 C -0.12 -4.39 5.51 32.06 0.18 -4.21 16 16 C 0.15 7.51 5.89 86.93 0.51 8.02 16 17 N -0.63 -32.53 3.40 -691.56 -2.35 -34.88 16 18 C -0.24 -13.50 10.27 84.03 0.86 -12.64 16 19 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 20 C -0.07 -4.02 5.49 84.86 0.47 -3.56 16 21 N -0.95 -57.36 10.09 21.65 0.22 -57.15 16 22 Si 0.98 45.84 29.55 68.60 2.03 47.87 16 23 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 24 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 25 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 26 C 0.14 5.49 5.88 86.73 0.51 6.00 16 27 C -0.12 -2.44 5.19 30.67 0.16 -2.28 16 28 C 0.11 2.19 6.43 86.36 0.56 2.75 16 29 H 0.25 1.01 7.80 -4.43 -0.03 0.98 16 30 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.06 0.95 8.10 -2.39 -0.02 0.93 16 33 H 0.06 0.94 8.10 -2.39 -0.02 0.92 16 34 H 0.12 1.35 7.70 -2.38 -0.02 1.33 16 35 H 0.12 1.25 7.93 -2.39 -0.02 1.23 16 36 H 0.08 1.03 8.14 -2.39 -0.02 1.02 16 37 H 0.11 1.00 5.93 -2.39 -0.01 0.99 16 38 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.08 1.52 7.27 -2.38 -0.02 1.51 16 40 H 0.07 1.70 8.12 -2.39 -0.02 1.68 16 41 H 0.08 2.44 8.08 -2.39 -0.02 2.42 16 42 H 0.06 2.24 8.05 -2.38 -0.02 2.22 16 43 H 0.07 3.91 5.87 -2.39 -0.01 3.90 16 44 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 45 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 46 H 0.03 1.16 7.67 -2.39 -0.02 1.14 16 47 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 48 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 49 H 0.08 1.65 7.27 -2.39 -0.02 1.63 16 50 H 0.08 1.75 7.01 -2.38 -0.02 1.73 16 51 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -74.32 404.33 4.18 -70.14 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: 0.89 Total: 12.21 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: 7.40 Total: -0.36 kcal Atomic # 7 Polarization: -100.75 SS G_CDS: -4.56 Total: -105.31 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: -1.58 Total: -24.56 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -74.32 4.18 -70.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716703574.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.544 kcal (2) G-P(sol) polarization free energy of solvation -74.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds