Wall clock time and date at job start Tue Mar 31 2020 19:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47265 * 2 1 4 4 O 1.42896 * 109.47105 * 180.02562 * 3 2 1 5 5 C 1.35904 * 116.99998 * 180.02562 * 4 3 2 6 6 C 1.38752 * 120.05420 * 359.71733 * 5 4 3 7 7 C 1.38124 * 119.93913 * 179.74572 * 6 5 4 8 8 C 1.38285 * 120.05858 * 0.51152 * 7 6 5 9 9 C 1.38245 * 120.11012 * 359.76224 * 8 7 6 10 10 C 1.50702 * 119.96924 * 179.97438 * 9 8 7 11 11 C 1.50700 * 109.47036 * 270.02320 * 10 9 8 12 12 O 1.21288 * 120.00209 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99900 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99859 * 179.97438 * 13 11 10 15 15 H 1.08993 * 109.47126 * 324.99936 * 14 13 11 16 16 C 1.53007 * 109.47113 * 84.99898 * 14 13 11 17 17 C 1.53002 * 109.46947 * 204.99441 * 14 13 11 18 18 N 1.46498 * 109.46992 * 55.00360 * 17 14 13 19 19 C 1.46505 * 120.00090 * 269.99954 * 18 17 14 20 20 C 1.36946 * 120.00101 * 89.99507 * 18 17 14 21 21 H 1.08000 * 119.99579 * 23.61782 * 20 18 17 22 22 C 1.38805 * 119.99897 * 203.61625 * 20 18 17 23 23 N 1.31625 * 120.00279 * 11.31640 * 22 20 18 24 24 Si 1.86795 * 119.99908 * 191.30777 * 22 20 18 25 25 H 1.48504 * 109.47106 * 90.00237 * 24 22 20 26 26 H 1.48497 * 109.47417 * 210.00072 * 24 22 20 27 27 H 1.48501 * 109.47320 * 330.00722 * 24 22 20 28 28 C 1.38160 * 120.05754 * 359.97438 * 9 8 7 29 29 H 1.09004 * 109.47331 * 59.99883 * 1 2 3 30 30 H 1.08996 * 109.47583 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47198 * 300.00061 * 1 2 3 32 32 H 1.09002 * 109.46728 * 239.99705 * 2 1 3 33 33 H 1.08993 * 109.46856 * 120.00253 * 2 1 3 34 34 H 1.09000 * 109.47062 * 59.99856 * 3 2 1 35 35 H 1.09007 * 109.46871 * 299.99803 * 3 2 1 36 36 H 1.07996 * 120.02915 * 359.97438 * 6 5 4 37 37 H 1.08004 * 119.97199 * 180.25228 * 7 6 5 38 38 H 1.07999 * 119.94453 * 179.74663 * 8 7 6 39 39 H 1.08995 * 109.46973 * 30.02294 * 10 9 8 40 40 H 1.08996 * 109.46929 * 150.03063 * 10 9 8 41 41 H 0.97000 * 120.00407 * 359.97438 * 13 11 10 42 42 H 1.09006 * 109.47154 * 59.99729 * 16 14 13 43 43 H 1.08996 * 109.46920 * 179.97438 * 16 14 13 44 44 H 1.08995 * 109.46935 * 300.00393 * 16 14 13 45 45 H 1.09001 * 109.46595 * 174.99918 * 17 14 13 46 46 H 1.08998 * 109.47368 * 294.99943 * 17 14 13 47 47 H 1.08994 * 109.47047 * 94.53620 * 19 18 17 48 48 H 1.08996 * 109.46697 * 214.53474 * 19 18 17 49 49 H 1.09000 * 109.46862 * 334.53258 * 19 18 17 50 50 H 0.96998 * 119.99870 * 180.02562 * 23 22 20 51 51 H 1.08001 * 120.03092 * 180.02562 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4424 -0.0006 5 6 4.0860 2.6533 -0.0001 6 6 3.3315 3.8177 -0.0051 7 6 3.9610 5.0471 0.0007 8 6 5.3420 5.1182 0.0007 9 6 6.0960 3.9594 -0.0001 10 6 7.6009 4.0405 -0.0007 11 6 8.1019 4.0688 -1.4217 12 8 7.3144 4.0276 -2.3433 13 7 9.4249 4.1398 -1.6685 14 6 9.9120 4.1666 -3.0499 15 1 9.2717 3.5425 -3.6731 16 6 9.8863 5.6047 -3.5719 17 6 11.3452 3.6330 -3.0958 18 7 11.3903 2.3016 -2.4864 19 6 11.6447 2.1614 -1.0505 20 6 11.1944 1.1879 -3.2590 21 1 11.3842 1.2276 -4.3214 22 6 10.7520 0.0082 -2.6764 23 7 10.3092 0.0119 -1.4369 24 14 10.7849 -1.5846 -3.6517 25 1 12.0895 -2.2638 -3.4466 26 1 9.6872 -2.4712 -3.1890 27 1 10.6044 -1.2852 -5.0950 28 6 5.4712 2.7272 -0.0004 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8901 36 1 2.2529 3.7628 -0.0097 37 1 3.3742 5.9538 0.0010 38 1 5.8324 6.0804 0.0011 39 1 7.9160 4.9483 0.5138 40 1 8.0118 3.1709 0.5121 41 1 10.0547 4.1730 -0.9315 42 1 10.5266 6.2290 -2.9486 43 1 10.2491 5.6247 -4.5995 44 1 8.8653 5.9849 -3.5390 45 1 11.6761 3.5695 -4.1325 46 1 12.0017 4.3070 -2.5455 47 1 10.6960 2.0957 -0.5181 48 1 12.2255 1.2567 -0.8711 49 1 12.2022 3.0277 -0.6941 50 1 10.0004 -0.8126 -1.0298 51 1 6.0607 1.8223 -0.0006 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001722905357.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:00 Heat of formation + Delta-G solvation = -41.426392 kcal Electronic energy + Delta-G solvation = -29155.058264 eV Core-core repulsion = 25248.067152 eV Total energy + Delta-G solvation = -3906.991112 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.17587 -39.16532 -37.57397 -36.21575 -34.13193 -33.92310 -32.48975 -31.17866 -30.25535 -29.92996 -27.35045 -26.53868 -26.15117 -25.55371 -22.75305 -22.21406 -21.79067 -20.99504 -20.13372 -19.67366 -17.69263 -16.75615 -16.55217 -16.34246 -16.13658 -15.87782 -15.42399 -14.84253 -14.56375 -14.27006 -14.11712 -13.87347 -13.60078 -13.40442 -13.20850 -13.04901 -12.83469 -12.54794 -12.37361 -12.35754 -12.12470 -12.04242 -11.58596 -11.43517 -11.39060 -11.34187 -11.33102 -11.01912 -10.81128 -10.75736 -10.71020 -10.66098 -10.50418 -10.17654 -9.92767 -9.82693 -9.26531 -8.62995 -8.55171 -8.27504 -8.04404 -6.71592 -5.70272 -3.16117 1.44647 1.61762 3.16420 3.31962 3.41339 3.48179 3.49399 3.73748 4.12232 4.53851 4.63614 4.65441 4.83340 4.92495 4.96972 5.07716 5.16232 5.21574 5.34597 5.37564 5.41055 5.43373 5.49932 5.52818 5.60729 5.68614 5.74334 5.76910 5.81892 5.88567 5.91343 5.99569 6.04478 6.14083 6.18932 6.29087 6.43396 6.51209 6.52676 6.58021 6.67057 6.75657 6.89627 6.95221 7.26747 7.34556 7.53277 7.67700 7.83394 8.22679 8.42287 8.94294 9.26088 9.88180 10.36387 11.34991 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.009567 B = 0.003309 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2925.905080 B = 8459.472967 C =10638.004478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.126 4.126 3 C 0.060 3.940 4 O -0.315 6.315 5 C 0.130 3.870 6 C -0.214 4.214 7 C -0.084 4.084 8 C -0.144 4.144 9 C -0.015 4.015 10 C -0.106 4.106 11 C 0.521 3.479 12 O -0.544 6.544 13 N -0.700 5.700 14 C 0.118 3.882 15 H 0.084 0.916 16 C -0.158 4.158 17 C 0.143 3.857 18 N -0.597 5.597 19 C 0.162 3.838 20 C -0.255 4.255 21 H 0.067 0.933 22 C 0.006 3.994 23 N -0.904 5.904 24 Si 0.903 3.097 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.280 1.280 28 C -0.132 4.132 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.098 0.902 40 H 0.107 0.893 41 H 0.394 0.606 42 H 0.048 0.952 43 H 0.059 0.941 44 H 0.051 0.949 45 H 0.057 0.943 46 H 0.041 0.959 47 H 0.032 0.968 48 H 0.042 0.958 49 H -0.006 1.006 50 H 0.251 0.749 51 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.869 9.558 6.841 17.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C -0.015 4.015 4 O -0.229 6.229 5 C 0.085 3.915 6 C -0.233 4.233 7 C -0.102 4.102 8 C -0.163 4.163 9 C -0.016 4.016 10 C -0.146 4.146 11 C 0.306 3.694 12 O -0.422 6.422 13 N -0.349 5.349 14 C 0.010 3.990 15 H 0.102 0.898 16 C -0.217 4.217 17 C 0.015 3.985 18 N -0.319 5.319 19 C 0.017 3.983 20 C -0.385 4.385 21 H 0.085 0.915 22 C -0.193 4.193 23 N -0.549 5.549 24 Si 0.733 3.267 25 H -0.216 1.216 26 H -0.218 1.218 27 H -0.205 1.205 28 C -0.150 4.150 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.116 0.884 40 H 0.125 0.875 41 H 0.228 0.772 42 H 0.067 0.933 43 H 0.078 0.922 44 H 0.070 0.930 45 H 0.076 0.924 46 H 0.059 0.941 47 H 0.050 0.950 48 H 0.061 0.939 49 H 0.013 0.987 50 H 0.061 0.939 51 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -13.386 9.161 6.274 17.391 hybrid contribution -0.018 -0.840 -0.151 0.853 sum -13.404 8.321 6.123 16.923 Atomic orbital electron populations 1.21684 0.94392 1.02444 1.02065 1.21493 0.95851 0.95033 1.03946 1.22822 0.78930 0.98640 1.01150 1.86081 1.20882 1.27189 1.88759 1.18890 0.92127 0.83917 0.96602 1.21126 0.99542 0.92525 1.10114 1.20791 0.94441 0.96716 0.98248 1.20842 0.93706 0.97711 1.04010 1.19076 0.94009 0.92355 0.96142 1.20715 0.92492 1.05168 0.96254 1.20156 0.82713 0.76109 0.90400 1.90674 1.55389 1.49925 1.46207 1.45765 1.06349 1.73818 1.09010 1.21827 0.99698 0.94861 0.82595 0.89787 1.22150 1.01332 0.97597 1.00667 1.21189 0.91894 0.87374 0.98058 1.43881 1.82499 1.00197 1.05359 1.20844 0.97899 0.95963 0.83584 1.19166 1.38735 0.88560 0.92046 0.91514 1.25002 0.98702 0.98798 0.96753 1.70022 1.45600 1.26101 1.13172 0.86277 0.77079 0.83791 0.79515 1.21602 1.21777 1.20543 1.20342 0.91360 0.98520 1.04794 0.92406 0.91772 0.92481 0.90662 0.90780 0.92266 0.92200 0.85999 0.86110 0.86243 0.88373 0.87466 0.77194 0.93280 0.92245 0.93032 0.92445 0.94092 0.95026 0.93904 0.98731 0.93879 0.84992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 37.16 0.37 -0.65 16 2 C -0.13 -1.17 6.30 -26.73 -0.17 -1.34 16 3 C 0.06 0.65 4.74 37.16 0.18 0.83 16 4 O -0.32 -4.80 10.14 -19.44 -0.20 -4.99 16 5 C 0.13 2.05 6.69 -39.22 -0.26 1.78 16 6 C -0.21 -2.87 9.04 -39.43 -0.36 -3.23 16 7 C -0.08 -1.07 10.04 -39.61 -0.40 -1.47 16 8 C -0.14 -2.02 9.70 -39.56 -0.38 -2.40 16 9 C -0.02 -0.24 4.37 -104.65 -0.46 -0.70 16 10 C -0.11 -1.60 5.83 -29.03 -0.17 -1.77 16 11 C 0.52 9.91 7.79 -10.99 -0.09 9.82 16 12 O -0.54 -12.49 15.70 5.55 0.09 -12.41 16 13 N -0.70 -12.66 4.41 -53.80 -0.24 -12.90 16 14 C 0.12 2.23 2.88 -67.92 -0.20 2.04 16 15 H 0.08 1.96 7.58 -51.93 -0.39 1.57 16 16 C -0.16 -2.43 9.48 37.16 0.35 -2.08 16 17 C 0.14 2.78 5.33 -4.04 -0.02 2.76 16 18 N -0.60 -14.33 2.78 -181.12 -0.50 -14.83 16 19 C 0.16 3.71 7.61 59.85 0.46 4.16 16 20 C -0.26 -6.96 9.66 -15.06 -0.15 -7.10 16 21 H 0.07 1.81 7.85 -52.49 -0.41 1.39 16 22 C 0.01 0.17 5.13 -17.43 -0.09 0.08 16 23 N -0.90 -25.93 10.66 55.49 0.59 -25.33 16 24 Si 0.90 22.31 29.57 -169.99 -5.03 17.28 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 27 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 28 C -0.13 -2.26 9.64 -39.43 -0.38 -2.64 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.55 7.67 -51.93 -0.40 0.15 16 35 H 0.06 0.61 7.65 -51.92 -0.40 0.21 16 36 H 0.12 1.31 6.30 -52.49 -0.33 0.98 16 37 H 0.12 1.19 8.06 -52.48 -0.42 0.76 16 38 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 39 H 0.10 1.13 8.08 -51.93 -0.42 0.71 16 40 H 0.11 1.61 8.08 -51.93 -0.42 1.19 16 41 H 0.39 6.44 7.17 -40.82 -0.29 6.15 16 42 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.06 1.10 8.03 -51.93 -0.42 0.68 16 46 H 0.04 0.70 7.86 -51.93 -0.41 0.29 16 47 H 0.03 0.76 6.90 -51.93 -0.36 0.41 16 48 H 0.04 1.09 7.30 -51.93 -0.38 0.71 16 49 H -0.01 -0.11 7.84 -51.93 -0.41 -0.52 16 50 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 51 H 0.13 2.41 8.06 -52.49 -0.42 1.98 16 LS Contribution 414.65 15.07 6.25 6.25 Total: -1.00 -33.32 414.65 -9.62 -42.94 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -8.82 Total: 5.90 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: -1.76 Total: -1.91 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: -0.15 Total: -53.06 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -0.11 Total: -17.40 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.03 Total: 17.28 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -33.32 -9.62 -42.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001722905357.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.514 kcal (2) G-P(sol) polarization free energy of solvation -33.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds