Wall clock time and date at job start Tue Mar 31 2020 19:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47265 * 2 1 4 4 O 1.42896 * 109.47105 * 180.02562 * 3 2 1 5 5 C 1.35904 * 116.99998 * 180.02562 * 4 3 2 6 6 C 1.38752 * 120.05420 * 359.71733 * 5 4 3 7 7 C 1.38124 * 119.93913 * 179.74572 * 6 5 4 8 8 C 1.38285 * 120.05858 * 0.51152 * 7 6 5 9 9 C 1.38245 * 120.11012 * 359.76224 * 8 7 6 10 10 C 1.50702 * 119.96924 * 179.97438 * 9 8 7 11 11 C 1.50700 * 109.47036 * 270.02320 * 10 9 8 12 12 O 1.21288 * 120.00209 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99900 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99859 * 179.97438 * 13 11 10 15 15 H 1.08993 * 109.47126 * 324.99936 * 14 13 11 16 16 C 1.53007 * 109.47113 * 84.99898 * 14 13 11 17 17 C 1.53002 * 109.46947 * 204.99441 * 14 13 11 18 18 N 1.46498 * 109.46992 * 55.00360 * 17 14 13 19 19 C 1.46505 * 120.00090 * 269.99954 * 18 17 14 20 20 C 1.36946 * 120.00101 * 89.99507 * 18 17 14 21 21 H 1.08000 * 119.99579 * 23.61782 * 20 18 17 22 22 C 1.38805 * 119.99897 * 203.61625 * 20 18 17 23 23 N 1.31625 * 120.00279 * 11.31640 * 22 20 18 24 24 Si 1.86795 * 119.99908 * 191.30777 * 22 20 18 25 25 H 1.48504 * 109.47106 * 90.00237 * 24 22 20 26 26 H 1.48497 * 109.47417 * 210.00072 * 24 22 20 27 27 H 1.48501 * 109.47320 * 330.00722 * 24 22 20 28 28 C 1.38160 * 120.05754 * 359.97438 * 9 8 7 29 29 H 1.09004 * 109.47331 * 59.99883 * 1 2 3 30 30 H 1.08996 * 109.47583 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47198 * 300.00061 * 1 2 3 32 32 H 1.09002 * 109.46728 * 239.99705 * 2 1 3 33 33 H 1.08993 * 109.46856 * 120.00253 * 2 1 3 34 34 H 1.09000 * 109.47062 * 59.99856 * 3 2 1 35 35 H 1.09007 * 109.46871 * 299.99803 * 3 2 1 36 36 H 1.07996 * 120.02915 * 359.97438 * 6 5 4 37 37 H 1.08004 * 119.97199 * 180.25228 * 7 6 5 38 38 H 1.07999 * 119.94453 * 179.74663 * 8 7 6 39 39 H 1.08995 * 109.46973 * 30.02294 * 10 9 8 40 40 H 1.08996 * 109.46929 * 150.03063 * 10 9 8 41 41 H 0.97000 * 120.00407 * 359.97438 * 13 11 10 42 42 H 1.09006 * 109.47154 * 59.99729 * 16 14 13 43 43 H 1.08996 * 109.46920 * 179.97438 * 16 14 13 44 44 H 1.08995 * 109.46935 * 300.00393 * 16 14 13 45 45 H 1.09001 * 109.46595 * 174.99918 * 17 14 13 46 46 H 1.08998 * 109.47368 * 294.99943 * 17 14 13 47 47 H 1.08994 * 109.47047 * 94.53620 * 19 18 17 48 48 H 1.08996 * 109.46697 * 214.53474 * 19 18 17 49 49 H 1.09000 * 109.46862 * 334.53258 * 19 18 17 50 50 H 0.96998 * 119.99870 * 180.02562 * 23 22 20 51 51 H 1.08001 * 120.03092 * 180.02562 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4424 -0.0006 5 6 4.0860 2.6533 -0.0001 6 6 3.3315 3.8177 -0.0051 7 6 3.9610 5.0471 0.0007 8 6 5.3420 5.1182 0.0007 9 6 6.0960 3.9594 -0.0001 10 6 7.6009 4.0405 -0.0007 11 6 8.1019 4.0688 -1.4217 12 8 7.3144 4.0276 -2.3433 13 7 9.4249 4.1398 -1.6685 14 6 9.9120 4.1666 -3.0499 15 1 9.2717 3.5425 -3.6731 16 6 9.8863 5.6047 -3.5719 17 6 11.3452 3.6330 -3.0958 18 7 11.3903 2.3016 -2.4864 19 6 11.6447 2.1614 -1.0505 20 6 11.1944 1.1879 -3.2590 21 1 11.3842 1.2276 -4.3214 22 6 10.7520 0.0082 -2.6764 23 7 10.3092 0.0119 -1.4369 24 14 10.7849 -1.5846 -3.6517 25 1 12.0895 -2.2638 -3.4466 26 1 9.6872 -2.4712 -3.1890 27 1 10.6044 -1.2852 -5.0950 28 6 5.4712 2.7272 -0.0004 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8901 36 1 2.2529 3.7628 -0.0097 37 1 3.3742 5.9538 0.0010 38 1 5.8324 6.0804 0.0011 39 1 7.9160 4.9483 0.5138 40 1 8.0118 3.1709 0.5121 41 1 10.0547 4.1730 -0.9315 42 1 10.5266 6.2290 -2.9486 43 1 10.2491 5.6247 -4.5995 44 1 8.8653 5.9849 -3.5390 45 1 11.6761 3.5695 -4.1325 46 1 12.0017 4.3070 -2.5455 47 1 10.6960 2.0957 -0.5181 48 1 12.2255 1.2567 -0.8711 49 1 12.2022 3.0277 -0.6941 50 1 10.0004 -0.8126 -1.0298 51 1 6.0607 1.8223 -0.0006 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001722905357.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:59 Heat of formation + Delta-G solvation = -61.007911 kcal Electronic energy + Delta-G solvation = -29155.907383 eV Core-core repulsion = 25248.067152 eV Total energy + Delta-G solvation = -3907.840230 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.32718 -40.57473 -38.73431 -37.88609 -35.69773 -34.89692 -33.73325 -33.00018 -31.76326 -31.07031 -28.51361 -27.94430 -27.40696 -27.33701 -23.95288 -23.52978 -23.01029 -22.23633 -21.55271 -21.12328 -18.85747 -18.70535 -17.99217 -17.26666 -17.20028 -17.07530 -16.98219 -16.64829 -15.94956 -15.51994 -15.35322 -15.13371 -15.01425 -14.80587 -14.71698 -14.43265 -14.17317 -13.74588 -13.49128 -13.46739 -13.27729 -13.11341 -13.06893 -12.84158 -12.79623 -12.64723 -12.54586 -12.39908 -12.28135 -12.22964 -12.15438 -12.04062 -11.82883 -11.69610 -11.67486 -11.56066 -10.79600 -10.62445 -9.84528 -9.79057 -9.15173 -8.70121 -7.81917 -5.27686 0.32152 0.49876 1.41736 1.43467 1.50641 1.83480 2.18630 2.44092 2.51076 2.89696 3.32282 3.66822 3.73732 3.82453 3.89365 3.96517 4.06676 4.12540 4.20042 4.26005 4.27591 4.40128 4.42111 4.46235 4.51019 4.53037 4.58173 4.62976 4.75195 4.79401 4.84989 4.87059 4.94255 5.02679 5.05764 5.07534 5.12903 5.24068 5.29096 5.34099 5.38858 5.41621 5.45606 5.63137 5.65716 5.77971 5.83380 5.85285 6.35267 6.47653 6.77789 7.19143 7.48331 7.91610 8.31471 9.19847 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.009567 B = 0.003309 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2925.905080 B = 8459.472967 C =10638.004478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.126 4.126 3 C 0.052 3.948 4 O -0.343 6.343 5 C 0.114 3.886 6 C -0.212 4.212 7 C -0.078 4.078 8 C -0.150 4.150 9 C -0.030 4.030 10 C -0.098 4.098 11 C 0.513 3.487 12 O -0.590 6.590 13 N -0.695 5.695 14 C 0.123 3.877 15 H 0.030 0.970 16 C -0.144 4.144 17 C 0.143 3.857 18 N -0.612 5.612 19 C 0.173 3.827 20 C -0.259 4.259 21 H 0.064 0.936 22 C -0.048 4.048 23 N -0.927 5.927 24 Si 0.956 3.044 25 H -0.282 1.282 26 H -0.302 1.302 27 H -0.274 1.274 28 C -0.169 4.169 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.151 0.849 37 H 0.160 0.840 38 H 0.145 0.855 39 H 0.141 0.859 40 H 0.101 0.899 41 H 0.405 0.595 42 H 0.078 0.922 43 H 0.073 0.927 44 H 0.039 0.961 45 H 0.060 0.940 46 H 0.078 0.922 47 H 0.014 0.986 48 H 0.010 0.990 49 H 0.039 0.961 50 H 0.243 0.757 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.405 12.336 7.236 19.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.163 4.163 3 C -0.022 4.022 4 O -0.258 6.258 5 C 0.069 3.931 6 C -0.231 4.231 7 C -0.096 4.096 8 C -0.168 4.168 9 C -0.031 4.031 10 C -0.137 4.137 11 C 0.301 3.699 12 O -0.471 6.471 13 N -0.345 5.345 14 C 0.015 3.985 15 H 0.049 0.951 16 C -0.203 4.203 17 C 0.016 3.984 18 N -0.334 5.334 19 C 0.029 3.971 20 C -0.389 4.389 21 H 0.082 0.918 22 C -0.244 4.244 23 N -0.574 5.574 24 Si 0.786 3.214 25 H -0.209 1.209 26 H -0.229 1.229 27 H -0.199 1.199 28 C -0.188 4.188 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.169 0.831 37 H 0.178 0.822 38 H 0.162 0.838 39 H 0.159 0.841 40 H 0.119 0.881 41 H 0.240 0.760 42 H 0.097 0.903 43 H 0.092 0.908 44 H 0.058 0.942 45 H 0.079 0.921 46 H 0.096 0.904 47 H 0.032 0.968 48 H 0.028 0.972 49 H 0.057 0.943 50 H 0.052 0.948 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -13.886 11.965 6.668 19.505 hybrid contribution 0.145 -1.665 -0.309 1.700 sum -13.741 10.300 6.359 18.313 Atomic orbital electron populations 1.21661 0.92091 1.03282 1.02937 1.21537 0.97724 0.94058 1.03030 1.23133 0.76842 0.99871 1.02372 1.86054 1.23313 1.27583 1.88848 1.19076 0.91918 0.85059 0.97062 1.21476 1.00920 0.91813 1.08877 1.21287 0.94345 0.97859 0.96060 1.21189 0.94471 0.97857 1.03256 1.19237 0.94470 0.92593 0.96760 1.20715 0.92306 1.06917 0.93758 1.20832 0.82551 0.74966 0.91565 1.90643 1.56493 1.52058 1.47956 1.45759 1.06469 1.73172 1.09060 1.21625 0.97960 0.96425 0.82489 0.95140 1.22001 1.01405 0.94922 1.01938 1.21367 0.92672 0.85790 0.98577 1.44090 1.82475 1.01232 1.05620 1.20647 0.97029 0.96328 0.83130 1.19436 1.37334 0.89858 0.92311 0.91787 1.25651 0.99522 1.01458 0.97772 1.70172 1.46963 1.25961 1.14257 0.85428 0.76745 0.80691 0.78578 1.20862 1.22897 1.19930 1.20356 0.92421 0.98215 1.07807 0.91826 0.91002 0.91269 0.92115 0.91255 0.90332 0.91416 0.83124 0.82245 0.83750 0.84088 0.88119 0.75951 0.90299 0.90836 0.94210 0.92131 0.90357 0.96824 0.97158 0.94310 0.94774 0.88192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.91 71.98 0.71 -1.05 16 2 C -0.13 -2.35 6.30 30.59 0.19 -2.16 16 3 C 0.05 1.12 4.74 71.98 0.34 1.46 16 4 O -0.34 -10.95 10.14 -92.47 -0.94 -11.88 16 5 C 0.11 3.70 6.69 22.51 0.15 3.85 16 6 C -0.21 -5.37 9.04 22.37 0.20 -5.17 16 7 C -0.08 -1.78 10.04 22.25 0.22 -1.56 16 8 C -0.15 -3.91 9.70 22.28 0.22 -3.70 16 9 C -0.03 -0.96 4.37 -19.88 -0.09 -1.05 16 10 C -0.10 -2.93 5.83 29.10 0.17 -2.76 16 11 C 0.51 19.78 7.79 87.66 0.68 20.46 16 12 O -0.59 -28.03 15.70 -3.05 -0.05 -28.08 16 13 N -0.69 -24.74 4.41 -442.51 -1.95 -26.69 16 14 C 0.12 4.58 2.88 44.99 0.13 4.71 16 15 H 0.03 1.47 7.58 -2.39 -0.02 1.45 16 16 C -0.14 -4.09 9.48 71.98 0.68 -3.41 16 17 C 0.14 5.30 5.33 86.38 0.46 5.76 16 18 N -0.61 -29.14 2.78 -726.94 -2.02 -31.16 16 19 C 0.17 7.87 7.61 127.77 0.97 8.84 16 20 C -0.26 -14.27 9.66 84.03 0.81 -13.46 16 21 H 0.06 3.50 7.85 -2.91 -0.02 3.47 16 22 C -0.05 -2.77 5.13 84.86 0.44 -2.33 16 23 N -0.93 -55.06 10.66 21.65 0.23 -54.83 16 24 Si 0.96 47.02 29.57 68.60 2.03 49.05 16 25 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 26 H -0.30 -15.25 7.11 99.48 0.71 -14.54 16 27 H -0.27 -13.07 7.11 99.48 0.71 -12.36 16 28 C -0.17 -6.21 9.64 22.37 0.22 -5.99 16 29 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.08 1.35 7.67 -2.39 -0.02 1.33 16 35 H 0.07 1.32 7.65 -2.38 -0.02 1.30 16 36 H 0.15 2.82 6.30 -2.91 -0.02 2.80 16 37 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 38 H 0.14 2.97 8.06 -2.91 -0.02 2.95 16 39 H 0.14 2.91 8.08 -2.39 -0.02 2.89 16 40 H 0.10 3.14 8.08 -2.39 -0.02 3.12 16 41 H 0.40 12.56 7.17 -92.71 -0.66 11.90 16 42 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 43 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.06 2.22 8.03 -2.39 -0.02 2.20 16 46 H 0.08 2.36 7.86 -2.39 -0.02 2.34 16 47 H 0.01 0.66 6.90 -2.39 -0.02 0.65 16 48 H 0.01 0.50 7.30 -2.39 -0.02 0.48 16 49 H 0.04 1.39 7.84 -2.39 -0.02 1.38 16 50 H 0.24 14.34 8.31 -92.71 -0.77 13.57 16 51 H 0.10 4.13 8.06 -2.91 -0.02 4.11 16 Total: -1.00 -76.92 414.65 4.05 -72.87 By element: Atomic # 1 Polarization: 28.02 SS G_CDS: 0.23 Total: 28.26 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: 6.51 Total: 2.46 kcal Atomic # 7 Polarization: -108.93 SS G_CDS: -3.74 Total: -112.68 kcal Atomic # 8 Polarization: -38.98 SS G_CDS: -0.99 Total: -39.96 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.05 kcal Total: -76.92 4.05 -72.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001722905357.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.866 kcal (2) G-P(sol) polarization free energy of solvation -76.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds