Wall clock time and date at job start Tue Mar 31 2020 19:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47433 * 2 1 4 4 O 1.42900 * 109.47176 * 180.02562 * 3 2 1 5 5 C 1.35895 * 116.99759 * 180.02562 * 4 3 2 6 6 C 1.38753 * 120.05810 * 359.72546 * 5 4 3 7 7 C 1.38124 * 119.94165 * 179.74203 * 6 5 4 8 8 C 1.38285 * 120.05990 * 0.51138 * 7 6 5 9 9 C 1.38247 * 120.10938 * 359.76301 * 8 7 6 10 10 C 1.50698 * 119.97374 * 179.97438 * 9 8 7 11 11 C 1.50704 * 109.47045 * 270.02548 * 10 9 8 12 12 O 1.21282 * 120.00171 * 359.97438 * 11 10 9 13 13 N 1.34773 * 119.99899 * 180.02562 * 11 10 9 14 14 C 1.46507 * 119.99894 * 179.97438 * 13 11 10 15 15 H 1.09003 * 109.47121 * 35.00011 * 14 13 11 16 16 C 1.52999 * 109.46981 * 274.99450 * 14 13 11 17 17 C 1.53004 * 109.47001 * 154.99617 * 14 13 11 18 18 N 1.46502 * 109.47065 * 304.99650 * 17 14 13 19 19 C 1.46498 * 120.00250 * 270.00124 * 18 17 14 20 20 C 1.36942 * 119.99937 * 89.99840 * 18 17 14 21 21 H 1.08003 * 119.99524 * 22.03489 * 20 18 17 22 22 C 1.38808 * 120.00383 * 202.02432 * 20 18 17 23 23 N 1.31620 * 119.99819 * 11.43960 * 22 20 18 24 24 Si 1.86800 * 120.00304 * 191.43639 * 22 20 18 25 25 H 1.48497 * 109.47063 * 90.00079 * 24 22 20 26 26 H 1.48498 * 109.46872 * 210.00562 * 24 22 20 27 27 H 1.48504 * 109.46873 * 330.00081 * 24 22 20 28 28 C 1.38171 * 120.05284 * 359.97438 * 9 8 7 29 29 H 1.08998 * 109.47160 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46786 * 299.99989 * 1 2 3 31 31 H 1.09001 * 109.46941 * 59.99777 * 1 2 3 32 32 H 1.09005 * 109.47062 * 239.99540 * 2 1 3 33 33 H 1.09001 * 109.46941 * 120.00223 * 2 1 3 34 34 H 1.09004 * 109.46662 * 59.99957 * 3 2 1 35 35 H 1.09000 * 109.46784 * 300.00319 * 3 2 1 36 36 H 1.07995 * 120.02759 * 359.97438 * 6 5 4 37 37 H 1.08005 * 119.96839 * 180.24670 * 7 6 5 38 38 H 1.07997 * 119.94802 * 179.73894 * 8 7 6 39 39 H 1.08998 * 109.46788 * 30.01926 * 10 9 8 40 40 H 1.08998 * 109.47420 * 150.02106 * 10 9 8 41 41 H 0.96998 * 120.00134 * 359.97438 * 13 11 10 42 42 H 1.08997 * 109.47026 * 180.02562 * 16 14 13 43 43 H 1.08996 * 109.46819 * 300.00084 * 16 14 13 44 44 H 1.08998 * 109.46690 * 60.00047 * 16 14 13 45 45 H 1.08997 * 109.47403 * 64.99939 * 17 14 13 46 46 H 1.08997 * 109.47159 * 185.00348 * 17 14 13 47 47 H 1.09000 * 109.47174 * 94.04395 * 19 18 17 48 48 H 1.08998 * 109.46903 * 214.04073 * 19 18 17 49 49 H 1.09000 * 109.47000 * 334.04534 * 19 18 17 50 50 H 0.96999 * 120.00112 * 179.97438 * 23 22 20 51 51 H 1.07999 * 120.02130 * 180.02562 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 3.4691 1.4424 -0.0006 5 6 4.0860 2.6532 -0.0001 6 6 3.3315 3.8177 -0.0049 7 6 3.9611 5.0471 0.0010 8 6 5.3421 5.1181 0.0009 9 6 6.0961 3.9594 -0.0001 10 6 7.6009 4.0404 -0.0008 11 6 8.1018 4.0688 -1.4219 12 8 7.3144 4.0269 -2.3434 13 7 9.4248 4.1397 -1.6687 14 6 9.9118 4.1668 -3.0502 15 1 9.2084 4.7200 -3.6727 16 6 10.0398 2.7350 -3.5740 17 6 11.2798 4.8506 -3.0955 18 7 11.1824 6.1785 -2.4843 19 6 10.8468 7.3417 -3.3092 20 6 11.4051 6.3324 -1.1419 21 1 11.9819 5.5958 -0.6023 22 6 10.8898 7.4352 -0.4748 23 7 10.0069 8.2101 -1.0685 24 14 11.4491 7.8194 1.2656 25 1 12.6341 8.7131 1.2187 26 1 10.3493 8.4935 2.0014 27 1 11.8083 6.5569 1.9601 28 6 5.4712 2.7271 -0.0005 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 2.2530 3.7628 -0.0094 37 1 3.3742 5.9538 0.0013 38 1 5.8324 6.0804 0.0012 39 1 7.9161 4.9481 0.5137 40 1 8.0119 3.1708 0.5120 41 1 10.0546 4.1729 -0.9318 42 1 10.4025 2.7551 -4.6016 43 1 10.7432 2.1820 -2.9515 44 1 9.0652 2.2479 -3.5417 45 1 12.0046 4.2500 -2.5460 46 1 11.6020 4.9505 -4.1319 47 1 9.7714 7.5154 -3.2720 48 1 11.3699 8.2194 -2.9296 49 1 11.1493 7.1558 -4.3398 50 1 9.6465 8.9805 -0.6022 51 1 6.0607 1.8222 -0.0009 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001722905358.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:04 Heat of formation + Delta-G solvation = -42.520361 kcal Electronic energy + Delta-G solvation = -29109.719733 eV Core-core repulsion = 25202.681183 eV Total energy + Delta-G solvation = -3907.038550 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.17441 -39.09772 -37.55910 -36.19434 -34.19855 -33.90192 -32.43516 -31.26882 -30.18760 -29.84847 -27.29461 -26.57375 -26.14312 -25.59667 -22.75313 -22.18300 -21.83690 -21.05088 -20.08925 -19.53539 -17.69447 -16.87951 -16.44696 -16.24033 -16.13186 -15.84285 -15.41471 -14.87127 -14.66114 -14.33564 -13.99309 -13.86615 -13.69036 -13.30795 -13.17724 -12.99614 -12.80450 -12.64537 -12.44984 -12.35163 -12.16390 -11.94572 -11.56619 -11.44950 -11.40815 -11.37011 -11.23220 -11.19896 -10.87781 -10.75231 -10.71409 -10.66168 -10.37687 -10.22096 -10.05076 -9.83450 -9.19210 -8.61029 -8.57649 -8.17797 -8.02348 -6.78891 -5.74891 -3.21052 1.47427 1.65135 3.10516 3.32132 3.39074 3.40776 3.41680 3.80191 4.20322 4.44513 4.57243 4.57477 4.87682 4.90027 4.94302 5.09573 5.11048 5.21492 5.31291 5.34680 5.41706 5.47952 5.56225 5.59582 5.60417 5.66343 5.72657 5.73018 5.80803 5.89064 5.90957 5.97382 6.03828 6.19845 6.22995 6.29333 6.42094 6.48347 6.57058 6.61378 6.76397 6.83864 6.90776 6.93458 7.37174 7.39676 7.49696 7.69545 7.79717 8.34873 8.39612 9.05235 9.19430 9.83542 10.33846 11.29060 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014996 B = 0.002731 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.741153 B =10250.578526 C =11312.205577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C 0.059 3.941 4 O -0.319 6.319 5 C 0.125 3.875 6 C -0.214 4.214 7 C -0.081 4.081 8 C -0.136 4.136 9 C -0.013 4.013 10 C -0.107 4.107 11 C 0.521 3.479 12 O -0.554 6.554 13 N -0.689 5.689 14 C 0.120 3.880 15 H 0.075 0.925 16 C -0.159 4.159 17 C 0.142 3.858 18 N -0.598 5.598 19 C 0.165 3.835 20 C -0.255 4.255 21 H 0.067 0.933 22 C 0.006 3.994 23 N -0.899 5.899 24 Si 0.897 3.103 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.279 1.279 28 C -0.138 4.138 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.126 0.874 39 H 0.109 0.891 40 H 0.097 0.903 41 H 0.403 0.597 42 H 0.057 0.943 43 H 0.050 0.950 44 H 0.051 0.949 45 H 0.048 0.952 46 H 0.051 0.949 47 H 0.027 0.973 48 H 0.045 0.955 49 H -0.005 1.005 50 H 0.252 0.748 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.521 -12.868 2.749 18.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.016 4.016 4 O -0.233 6.233 5 C 0.080 3.920 6 C -0.233 4.233 7 C -0.099 4.099 8 C -0.155 4.155 9 C -0.014 4.014 10 C -0.147 4.147 11 C 0.307 3.693 12 O -0.433 6.433 13 N -0.339 5.339 14 C 0.011 3.989 15 H 0.093 0.907 16 C -0.218 4.218 17 C 0.014 3.986 18 N -0.321 5.321 19 C 0.020 3.980 20 C -0.384 4.384 21 H 0.084 0.916 22 C -0.194 4.194 23 N -0.544 5.544 24 Si 0.727 3.273 25 H -0.216 1.216 26 H -0.218 1.218 27 H -0.205 1.205 28 C -0.157 4.157 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.140 0.860 37 H 0.140 0.860 38 H 0.144 0.856 39 H 0.127 0.873 40 H 0.115 0.885 41 H 0.239 0.761 42 H 0.076 0.924 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.066 0.934 46 H 0.069 0.931 47 H 0.045 0.955 48 H 0.063 0.937 49 H 0.013 0.987 50 H 0.062 0.938 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -13.051 -12.902 2.139 18.476 hybrid contribution 0.274 0.662 1.308 1.492 sum -12.777 -12.240 3.448 18.026 Atomic orbital electron populations 1.21690 0.94367 1.02427 1.02198 1.21483 0.95921 0.95049 1.03699 1.22817 0.78952 0.98524 1.01306 1.86021 1.20878 1.27334 1.89043 1.18832 0.92077 0.83822 0.97278 1.21120 0.99493 0.92531 1.10142 1.20858 0.94523 0.96804 0.97709 1.21015 0.93700 0.98390 1.02368 1.19124 0.94168 0.92313 0.95787 1.20711 0.92142 1.05376 0.96479 1.20124 0.82768 0.76183 0.90270 1.90649 1.55487 1.50954 1.46213 1.45694 1.06423 1.72689 1.09053 1.21774 0.99382 0.94676 0.83022 0.90696 1.22153 1.01353 0.97816 1.00500 1.21183 0.92943 0.87527 0.96972 1.43889 1.81814 1.00774 1.05580 1.20787 0.99107 0.89382 0.88720 1.19087 1.26739 1.08118 0.84483 0.91565 1.24998 0.97281 0.99482 0.97589 1.70083 1.29810 1.17674 1.36817 0.86383 0.77846 0.78303 0.84746 1.21600 1.21774 1.20470 1.20170 0.91187 0.97952 1.06397 0.91794 0.92406 0.92358 0.90814 0.90885 0.92226 0.92163 0.86036 0.85965 0.85628 0.87324 0.88485 0.76128 0.92416 0.93081 0.92987 0.93388 0.93105 0.95454 0.93672 0.98670 0.93783 0.85645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.91 37.16 0.37 -0.50 16 2 C -0.12 -0.97 6.30 -26.73 -0.17 -1.13 16 3 C 0.06 0.58 4.74 37.16 0.18 0.76 16 4 O -0.32 -4.31 10.14 -19.41 -0.20 -4.51 16 5 C 0.12 1.85 6.69 -39.22 -0.26 1.59 16 6 C -0.21 -2.92 9.04 -39.43 -0.36 -3.28 16 7 C -0.08 -1.16 10.04 -39.61 -0.40 -1.55 16 8 C -0.14 -2.24 9.70 -39.56 -0.38 -2.62 16 9 C -0.01 -0.22 4.37 -104.64 -0.46 -0.68 16 10 C -0.11 -1.74 5.83 -29.03 -0.17 -1.91 16 11 C 0.52 10.26 7.79 -10.99 -0.09 10.18 16 12 O -0.55 -12.75 15.70 5.56 0.09 -12.66 16 13 N -0.69 -13.11 4.49 -53.80 -0.24 -13.35 16 14 C 0.12 2.25 2.88 -67.93 -0.20 2.05 16 15 H 0.07 1.65 7.58 -51.93 -0.39 1.26 16 16 C -0.16 -2.46 9.48 37.16 0.35 -2.11 16 17 C 0.14 2.73 5.36 -4.04 -0.02 2.70 16 18 N -0.60 -14.08 2.82 -181.12 -0.51 -14.59 16 19 C 0.16 4.01 9.01 59.85 0.54 4.55 16 20 C -0.25 -6.33 8.02 -15.06 -0.12 -6.45 16 21 H 0.07 1.59 7.84 -52.48 -0.41 1.18 16 22 C 0.01 0.14 5.13 -17.43 -0.09 0.05 16 23 N -0.90 -24.99 10.57 55.49 0.59 -24.41 16 24 Si 0.90 20.54 29.57 -169.99 -5.03 15.52 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 28 C -0.14 -2.18 9.64 -39.43 -0.38 -2.56 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.52 7.67 -51.93 -0.40 0.12 16 35 H 0.06 0.56 7.65 -51.93 -0.40 0.16 16 36 H 0.12 1.33 6.30 -52.49 -0.33 1.00 16 37 H 0.12 1.44 8.06 -52.48 -0.42 1.02 16 38 H 0.13 2.09 8.06 -52.49 -0.42 1.67 16 39 H 0.11 1.79 8.08 -51.93 -0.42 1.37 16 40 H 0.10 1.28 8.08 -51.93 -0.42 0.86 16 41 H 0.40 7.44 7.40 -40.82 -0.30 7.14 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.05 0.87 8.03 -51.93 -0.42 0.45 16 46 H 0.05 0.90 7.86 -51.93 -0.41 0.49 16 47 H 0.03 0.74 7.44 -51.93 -0.39 0.35 16 48 H 0.04 1.18 7.15 -51.93 -0.37 0.80 16 49 H -0.01 -0.11 7.85 -51.93 -0.41 -0.52 16 50 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 51 H 0.13 1.83 8.06 -52.49 -0.42 1.41 16 LS Contribution 415.10 15.07 6.26 6.26 Total: -1.00 -31.25 415.10 -9.55 -40.80 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -8.85 Total: 7.88 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: -1.65 Total: -0.92 kcal Atomic # 7 Polarization: -52.19 SS G_CDS: -0.17 Total: -52.35 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: -0.11 Total: -17.17 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.03 Total: 15.52 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -31.25 -9.55 -40.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001722905358.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.720 kcal (2) G-P(sol) polarization free energy of solvation -31.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds