Wall clock time and date at job start Tue Mar 31 2020 19:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47433 * 2 1 4 4 O 1.42900 * 109.47176 * 180.02562 * 3 2 1 5 5 C 1.35895 * 116.99759 * 180.02562 * 4 3 2 6 6 C 1.38753 * 120.05810 * 359.72546 * 5 4 3 7 7 C 1.38124 * 119.94165 * 179.74203 * 6 5 4 8 8 C 1.38285 * 120.05990 * 0.51138 * 7 6 5 9 9 C 1.38247 * 120.10938 * 359.76301 * 8 7 6 10 10 C 1.50698 * 119.97374 * 179.97438 * 9 8 7 11 11 C 1.50704 * 109.47045 * 270.02548 * 10 9 8 12 12 O 1.21282 * 120.00171 * 359.97438 * 11 10 9 13 13 N 1.34773 * 119.99899 * 180.02562 * 11 10 9 14 14 C 1.46507 * 119.99894 * 179.97438 * 13 11 10 15 15 H 1.09003 * 109.47121 * 35.00011 * 14 13 11 16 16 C 1.52999 * 109.46981 * 274.99450 * 14 13 11 17 17 C 1.53004 * 109.47001 * 154.99617 * 14 13 11 18 18 N 1.46502 * 109.47065 * 304.99650 * 17 14 13 19 19 C 1.46498 * 120.00250 * 270.00124 * 18 17 14 20 20 C 1.36942 * 119.99937 * 89.99840 * 18 17 14 21 21 H 1.08003 * 119.99524 * 22.03489 * 20 18 17 22 22 C 1.38808 * 120.00383 * 202.02432 * 20 18 17 23 23 N 1.31620 * 119.99819 * 11.43960 * 22 20 18 24 24 Si 1.86800 * 120.00304 * 191.43639 * 22 20 18 25 25 H 1.48497 * 109.47063 * 90.00079 * 24 22 20 26 26 H 1.48498 * 109.46872 * 210.00562 * 24 22 20 27 27 H 1.48504 * 109.46873 * 330.00081 * 24 22 20 28 28 C 1.38171 * 120.05284 * 359.97438 * 9 8 7 29 29 H 1.08998 * 109.47160 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46786 * 299.99989 * 1 2 3 31 31 H 1.09001 * 109.46941 * 59.99777 * 1 2 3 32 32 H 1.09005 * 109.47062 * 239.99540 * 2 1 3 33 33 H 1.09001 * 109.46941 * 120.00223 * 2 1 3 34 34 H 1.09004 * 109.46662 * 59.99957 * 3 2 1 35 35 H 1.09000 * 109.46784 * 300.00319 * 3 2 1 36 36 H 1.07995 * 120.02759 * 359.97438 * 6 5 4 37 37 H 1.08005 * 119.96839 * 180.24670 * 7 6 5 38 38 H 1.07997 * 119.94802 * 179.73894 * 8 7 6 39 39 H 1.08998 * 109.46788 * 30.01926 * 10 9 8 40 40 H 1.08998 * 109.47420 * 150.02106 * 10 9 8 41 41 H 0.96998 * 120.00134 * 359.97438 * 13 11 10 42 42 H 1.08997 * 109.47026 * 180.02562 * 16 14 13 43 43 H 1.08996 * 109.46819 * 300.00084 * 16 14 13 44 44 H 1.08998 * 109.46690 * 60.00047 * 16 14 13 45 45 H 1.08997 * 109.47403 * 64.99939 * 17 14 13 46 46 H 1.08997 * 109.47159 * 185.00348 * 17 14 13 47 47 H 1.09000 * 109.47174 * 94.04395 * 19 18 17 48 48 H 1.08998 * 109.46903 * 214.04073 * 19 18 17 49 49 H 1.09000 * 109.47000 * 334.04534 * 19 18 17 50 50 H 0.96999 * 120.00112 * 179.97438 * 23 22 20 51 51 H 1.07999 * 120.02130 * 180.02562 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 3.4691 1.4424 -0.0006 5 6 4.0860 2.6532 -0.0001 6 6 3.3315 3.8177 -0.0049 7 6 3.9611 5.0471 0.0010 8 6 5.3421 5.1181 0.0009 9 6 6.0961 3.9594 -0.0001 10 6 7.6009 4.0404 -0.0008 11 6 8.1018 4.0688 -1.4219 12 8 7.3144 4.0269 -2.3434 13 7 9.4248 4.1397 -1.6687 14 6 9.9118 4.1668 -3.0502 15 1 9.2084 4.7200 -3.6727 16 6 10.0398 2.7350 -3.5740 17 6 11.2798 4.8506 -3.0955 18 7 11.1824 6.1785 -2.4843 19 6 10.8468 7.3417 -3.3092 20 6 11.4051 6.3324 -1.1419 21 1 11.9819 5.5958 -0.6023 22 6 10.8898 7.4352 -0.4748 23 7 10.0069 8.2101 -1.0685 24 14 11.4491 7.8194 1.2656 25 1 12.6341 8.7131 1.2187 26 1 10.3493 8.4935 2.0014 27 1 11.8083 6.5569 1.9601 28 6 5.4712 2.7271 -0.0005 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 2.2530 3.7628 -0.0094 37 1 3.3742 5.9538 0.0013 38 1 5.8324 6.0804 0.0012 39 1 7.9161 4.9481 0.5137 40 1 8.0119 3.1708 0.5120 41 1 10.0546 4.1729 -0.9318 42 1 10.4025 2.7551 -4.6016 43 1 10.7432 2.1820 -2.9515 44 1 9.0652 2.2479 -3.5417 45 1 12.0046 4.2500 -2.5460 46 1 11.6020 4.9505 -4.1319 47 1 9.7714 7.5154 -3.2720 48 1 11.3699 8.2194 -2.9296 49 1 11.1493 7.1558 -4.3398 50 1 9.6465 8.9805 -0.6022 51 1 6.0607 1.8222 -0.0009 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001722905358.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:03 Heat of formation + Delta-G solvation = -59.647148 kcal Electronic energy + Delta-G solvation = -29110.462406 eV Core-core repulsion = 25202.681183 eV Total energy + Delta-G solvation = -3907.781223 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.31972 -40.53217 -38.72156 -37.86746 -35.64557 -34.86040 -33.74185 -33.03358 -31.64347 -31.04485 -28.50308 -28.01400 -27.34956 -27.32429 -23.93343 -23.52854 -23.04167 -22.23062 -21.45646 -21.07268 -18.84723 -18.66054 -17.85928 -17.23111 -17.21627 -17.03843 -16.95993 -16.65268 -16.00648 -15.53160 -15.20202 -15.11575 -14.92087 -14.82055 -14.68328 -14.43055 -14.16075 -13.86067 -13.55409 -13.33466 -13.27976 -13.06579 -13.04212 -12.85181 -12.80801 -12.68919 -12.50234 -12.42349 -12.22603 -12.15801 -12.11919 -11.91875 -11.91304 -11.68628 -11.64193 -11.52773 -10.75789 -10.57103 -9.80120 -9.75356 -9.16620 -8.73617 -7.73454 -5.20972 0.30823 0.47391 1.50086 1.53421 1.60008 1.85952 2.17806 2.47812 2.56316 2.89584 3.41882 3.67327 3.74508 3.82569 3.93919 3.98010 4.08905 4.10303 4.19239 4.27783 4.28860 4.36223 4.46442 4.48637 4.53356 4.54384 4.58344 4.64426 4.74871 4.78014 4.83210 4.86676 4.93826 5.02807 5.06837 5.10878 5.17203 5.21814 5.27923 5.34866 5.35550 5.42889 5.43996 5.64455 5.69416 5.76046 5.78100 5.85304 6.38462 6.45922 6.85311 7.20793 7.51934 7.93055 8.39845 9.30137 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014996 B = 0.002731 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.741153 B =10250.578526 C =11312.205577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.121 4.121 3 C 0.050 3.950 4 O -0.331 6.331 5 C 0.120 3.880 6 C -0.211 4.211 7 C -0.081 4.081 8 C -0.163 4.163 9 C -0.028 4.028 10 C -0.100 4.100 11 C 0.515 3.485 12 O -0.593 6.593 13 N -0.688 5.688 14 C 0.122 3.878 15 H 0.035 0.965 16 C -0.145 4.145 17 C 0.142 3.858 18 N -0.611 5.611 19 C 0.180 3.820 20 C -0.244 4.244 21 H 0.082 0.918 22 C -0.048 4.048 23 N -0.936 5.936 24 Si 0.955 3.045 25 H -0.296 1.296 26 H -0.304 1.304 27 H -0.258 1.258 28 C -0.153 4.153 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.152 0.848 37 H 0.146 0.854 38 H 0.111 0.889 39 H 0.103 0.897 40 H 0.129 0.871 41 H 0.407 0.593 42 H 0.078 0.922 43 H 0.072 0.928 44 H 0.036 0.964 45 H 0.070 0.930 46 H 0.070 0.930 47 H -0.009 1.009 48 H 0.020 0.980 49 H 0.024 0.976 50 H 0.242 0.758 51 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.594 -14.985 3.429 19.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.159 4.159 3 C -0.025 4.025 4 O -0.245 6.245 5 C 0.075 3.925 6 C -0.230 4.230 7 C -0.099 4.099 8 C -0.182 4.182 9 C -0.029 4.029 10 C -0.139 4.139 11 C 0.302 3.698 12 O -0.475 6.475 13 N -0.337 5.337 14 C 0.014 3.986 15 H 0.054 0.946 16 C -0.204 4.204 17 C 0.015 3.985 18 N -0.334 5.334 19 C 0.035 3.965 20 C -0.374 4.374 21 H 0.100 0.900 22 C -0.243 4.243 23 N -0.583 5.583 24 Si 0.785 3.215 25 H -0.224 1.224 26 H -0.232 1.232 27 H -0.182 1.182 28 C -0.172 4.172 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.169 0.831 37 H 0.164 0.836 38 H 0.129 0.871 39 H 0.121 0.879 40 H 0.147 0.853 41 H 0.243 0.757 42 H 0.097 0.903 43 H 0.091 0.909 44 H 0.056 0.944 45 H 0.088 0.912 46 H 0.089 0.911 47 H 0.009 0.991 48 H 0.038 0.962 49 H 0.043 0.957 50 H 0.051 0.949 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -13.090 -15.071 2.825 20.161 hybrid contribution 0.266 1.253 1.018 1.637 sum -12.824 -13.818 3.843 19.239 Atomic orbital electron populations 1.21681 0.92651 1.03269 1.02709 1.21506 0.97267 0.93707 1.03415 1.23147 0.76999 1.00126 1.02207 1.86019 1.23023 1.26747 1.88752 1.18984 0.92075 0.84783 0.96646 1.21436 1.00992 0.91706 1.08829 1.21153 0.93853 0.98261 0.96645 1.21103 0.94999 0.97880 1.04175 1.19195 0.94231 0.92783 0.96676 1.20690 0.92464 1.06467 0.94316 1.20696 0.82605 0.75237 0.91296 1.90620 1.56369 1.52775 1.47713 1.45751 1.06451 1.72165 1.09330 1.21667 0.97899 0.96444 0.82544 0.94647 1.22014 1.01253 0.95128 1.02032 1.21375 0.93360 0.85560 0.98182 1.44123 1.81565 1.02263 1.05415 1.20476 0.96484 0.89253 0.90317 1.19455 1.25313 1.07614 0.85066 0.90016 1.25662 0.97850 0.99977 1.00837 1.70277 1.31717 1.18200 1.38095 0.85440 0.76398 0.78481 0.81196 1.22414 1.23169 1.18160 1.20299 0.92090 0.97809 1.06998 0.90833 0.91695 0.92051 0.91419 0.90913 0.90845 0.91605 0.83063 0.83588 0.87077 0.87893 0.85295 0.75671 0.90325 0.90879 0.94442 0.91206 0.91141 0.99114 0.96160 0.95722 0.94895 0.85058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.91 71.98 0.71 -0.66 16 2 C -0.12 -1.69 6.30 30.59 0.19 -1.50 16 3 C 0.05 0.88 4.74 71.98 0.34 1.22 16 4 O -0.33 -8.59 10.14 -92.37 -0.94 -9.53 16 5 C 0.12 3.48 6.69 22.51 0.15 3.64 16 6 C -0.21 -5.47 9.04 22.37 0.20 -5.27 16 7 C -0.08 -2.28 10.04 22.25 0.22 -2.06 16 8 C -0.16 -5.50 9.70 22.28 0.22 -5.29 16 9 C -0.03 -0.95 4.37 -19.88 -0.09 -1.04 16 10 C -0.10 -3.27 5.83 29.10 0.17 -3.10 16 11 C 0.51 20.59 7.79 87.66 0.68 21.27 16 12 O -0.59 -28.16 15.70 -3.04 -0.05 -28.21 16 13 N -0.69 -25.91 4.49 -442.51 -1.99 -27.89 16 14 C 0.12 4.50 2.88 44.99 0.13 4.63 16 15 H 0.04 1.59 7.58 -2.39 -0.02 1.57 16 16 C -0.15 -4.20 9.48 71.98 0.68 -3.51 16 17 C 0.14 5.15 5.36 86.38 0.46 5.61 16 18 N -0.61 -28.35 2.82 -726.94 -2.05 -30.40 16 19 C 0.18 8.89 9.01 127.77 1.15 10.04 16 20 C -0.24 -11.92 8.02 84.03 0.67 -11.25 16 21 H 0.08 3.71 7.84 -2.91 -0.02 3.68 16 22 C -0.05 -2.51 5.13 84.86 0.44 -2.08 16 23 N -0.94 -53.73 10.57 21.65 0.23 -53.50 16 24 Si 0.96 42.37 29.57 68.60 2.03 44.40 16 25 H -0.30 -13.42 7.11 99.48 0.71 -12.72 16 26 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 27 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 28 C -0.15 -4.83 9.64 22.37 0.22 -4.61 16 29 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 31 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 33 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.07 1.10 7.67 -2.38 -0.02 1.08 16 35 H 0.07 1.09 7.65 -2.39 -0.02 1.07 16 36 H 0.15 2.91 6.30 -2.91 -0.02 2.89 16 37 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 38 H 0.11 3.95 8.06 -2.91 -0.02 3.93 16 39 H 0.10 3.47 8.08 -2.39 -0.02 3.45 16 40 H 0.13 3.28 8.08 -2.39 -0.02 3.26 16 41 H 0.41 14.53 7.40 -92.71 -0.69 13.85 16 42 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.07 2.27 8.03 -2.39 -0.02 2.25 16 46 H 0.07 2.30 7.86 -2.39 -0.02 2.28 16 47 H -0.01 -0.54 7.44 -2.39 -0.02 -0.55 16 48 H 0.02 1.06 7.15 -2.39 -0.02 1.05 16 49 H 0.02 1.04 7.85 -2.39 -0.02 1.02 16 50 H 0.24 13.82 8.31 -92.71 -0.77 13.05 16 51 H 0.13 3.82 8.06 -2.91 -0.02 3.79 16 Total: -1.00 -69.47 415.10 4.01 -65.46 By element: Atomic # 1 Polarization: 33.40 SS G_CDS: 0.21 Total: 33.62 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: 6.56 Total: 6.05 kcal Atomic # 7 Polarization: -107.98 SS G_CDS: -3.81 Total: -111.79 kcal Atomic # 8 Polarization: -36.75 SS G_CDS: -0.98 Total: -37.74 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Total: -69.47 4.01 -65.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001722905358.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.816 kcal (2) G-P(sol) polarization free energy of solvation -69.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds