Wall clock time and date at job start Tue Mar 31 2020 19:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 O 1.42905 * 109.46963 * 337.28699 * 3 2 1 5 5 C 1.42899 * 113.99795 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.47077 * 180.02562 * 5 4 3 7 7 C 1.50698 * 109.47051 * 180.02562 * 6 5 4 8 8 O 1.21286 * 120.00247 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00072 * 179.97438 * 7 6 5 10 10 C 1.46922 * 120.63151 * 180.02562 * 9 7 6 11 11 C 1.53190 * 108.77482 * 233.62944 * 10 9 7 12 12 C 1.53043 * 109.31158 * 305.36294 * 11 10 9 13 13 N 1.46498 * 109.46119 * 181.38501 * 12 11 10 14 14 C 1.36938 * 119.99955 * 300.00481 * 13 12 11 15 15 H 1.08004 * 120.00344 * 33.56246 * 14 13 12 16 16 C 1.38818 * 119.99780 * 213.56287 * 14 13 12 17 17 N 1.31615 * 120.00012 * 22.63141 * 16 14 13 18 18 Si 1.86799 * 119.99908 * 202.34894 * 16 14 13 19 19 H 1.48506 * 109.47344 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46972 * 120.00266 * 18 16 14 21 21 H 1.48495 * 109.47357 * 239.99824 * 18 16 14 22 22 C 1.46494 * 120.00212 * 119.99815 * 13 12 11 23 23 C 1.52998 * 109.47574 * 274.70537 * 22 13 12 24 24 C 1.53001 * 117.49890 * 243.62240 * 23 22 13 25 25 C 1.52993 * 117.50106 * 174.99562 * 23 22 13 26 26 C 1.53041 * 109.53636 * 61.36546 * 12 11 10 27 27 C 1.46929 * 120.62702 * 0.02562 * 9 7 6 28 28 H 4.38447 * 5.44472 * 179.97438 * 4 1 2 29 29 H 1.08996 * 109.47228 * 217.28955 * 3 2 1 30 30 H 1.09001 * 109.46821 * 97.28607 * 3 2 1 31 31 H 1.09000 * 109.47240 * 60.00007 * 5 4 3 32 32 H 1.09002 * 109.46754 * 300.00151 * 5 4 3 33 33 H 1.09000 * 109.47315 * 59.99766 * 6 5 4 34 34 H 1.08995 * 109.46917 * 299.99831 * 6 5 4 35 35 H 1.08997 * 109.58789 * 113.84287 * 10 9 7 36 36 H 1.08997 * 109.70619 * 353.48372 * 10 9 7 37 37 H 1.08999 * 109.50201 * 185.41175 * 11 10 9 38 38 H 1.08998 * 109.52792 * 65.33241 * 11 10 9 39 39 H 1.08995 * 109.46098 * 301.35628 * 12 11 10 40 40 H 0.96997 * 120.00364 * 180.02562 * 17 16 14 41 41 H 1.08997 * 109.47082 * 34.70537 * 22 13 12 42 42 H 1.09000 * 109.47453 * 154.69872 * 22 13 12 43 43 H 1.09004 * 115.54955 * 29.32329 * 23 22 13 44 44 H 1.08994 * 117.49886 * 359.97438 * 24 23 22 45 45 H 1.08999 * 117.49623 * 145.02290 * 24 23 22 46 46 H 1.09008 * 117.50105 * 214.97797 * 25 23 22 47 47 H 1.08994 * 117.50197 * 0.02562 * 25 23 22 48 48 H 1.09003 * 109.49498 * 58.58668 * 26 12 11 49 49 H 1.09001 * 109.49807 * 178.68214 * 26 12 11 50 50 H 1.09002 * 109.58391 * 246.15744 * 27 9 7 51 51 H 1.08998 * 109.58468 * 6.43695 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 8 3.1229 -1.2420 0.5202 5 6 4.5475 -1.3452 0.5643 6 6 4.9426 -2.7089 1.1345 7 6 6.4450 -2.8175 1.1816 8 8 7.1321 -1.8952 0.7965 9 7 7.0251 -3.9396 1.6515 10 6 8.4884 -4.0601 1.7042 11 6 8.9042 -5.3414 0.9747 12 6 8.1534 -6.5321 1.5753 13 7 8.5732 -7.7637 0.9021 14 6 8.3892 -7.9031 -0.4476 15 1 8.4651 -7.0417 -1.0949 16 6 8.1050 -9.1515 -0.9841 17 7 7.5802 -10.0899 -0.2251 18 14 8.4602 -9.4968 -2.7852 19 1 9.0395 -8.2841 -3.4170 20 1 9.4259 -10.6198 -2.8928 21 1 7.1981 -9.8614 -3.4776 22 6 9.1900 -8.8461 1.6729 23 6 10.6922 -8.5872 1.8039 24 6 11.6421 -9.5960 1.1552 25 6 11.5010 -9.5478 2.6779 26 6 6.6475 -6.3357 1.3864 27 6 6.2061 -5.0655 2.1209 28 1 -1.0498 -0.0003 0.0003 29 1 3.0090 0.8184 0.6226 30 1 3.0093 0.1312 -1.0194 31 1 4.9496 -0.5554 1.1989 32 1 4.9505 -1.2424 -0.4432 33 1 4.5406 -3.4985 0.4996 34 1 4.5395 -2.8121 2.1419 35 1 8.8139 -4.1093 2.7433 36 1 8.9459 -3.1983 1.2184 37 1 9.9775 -5.4931 1.0887 38 1 8.6597 -5.2536 -0.0839 39 1 8.3794 -6.6047 2.6391 40 1 7.3820 -10.9624 -0.5998 41 1 8.7405 -8.8874 2.6650 42 1 9.0280 -9.7947 1.1610 43 1 10.9908 -7.5389 1.7987 44 1 11.1969 -10.4443 0.6354 45 1 12.5659 -9.2115 0.7230 46 1 12.3320 -9.1315 3.2475 47 1 10.9630 -10.3644 3.1593 48 1 6.4238 -6.2382 0.3241 49 1 6.1146 -7.1950 1.7935 50 1 6.3458 -5.1965 3.1940 51 1 5.1554 -4.8656 1.9110 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001723648128.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:38 Heat of formation + Delta-G solvation = 19.665451 kcal Electronic energy + Delta-G solvation = -29060.386322 eV Core-core repulsion = 25156.044351 eV Total energy + Delta-G solvation = -3904.341971 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.09187 -38.36351 -37.63705 -36.56941 -34.60482 -33.74471 -32.37377 -31.66144 -30.41733 -29.86959 -27.26450 -26.20338 -25.08999 -23.79241 -22.55800 -22.01313 -21.70275 -20.06970 -19.47932 -18.95051 -18.47033 -17.56620 -16.65663 -16.48356 -16.13049 -15.61145 -15.25795 -15.04055 -14.99890 -14.72777 -13.99722 -13.88523 -13.73707 -13.55068 -13.30614 -12.99239 -12.89432 -12.79875 -12.22694 -11.95699 -11.84664 -11.75474 -11.54269 -11.34652 -11.00207 -10.92349 -10.83687 -10.78548 -10.73867 -10.70324 -10.64698 -10.25143 -10.06182 -9.99602 -9.84948 -9.80755 -9.66026 -9.31767 -9.02286 -8.42995 -8.41434 -6.64322 -5.81671 -3.33345 2.17897 2.50585 2.70946 3.08007 3.34126 3.43917 3.46558 3.69570 4.24246 4.43275 4.58405 4.62594 4.88002 4.91382 4.99478 5.09792 5.15954 5.16662 5.30303 5.36960 5.45993 5.53941 5.55729 5.58895 5.64606 5.68735 5.71608 5.74662 5.77970 5.79764 6.00239 6.11903 6.15203 6.23811 6.27712 6.40455 6.49160 6.63344 6.69724 6.73970 6.81044 6.85587 6.89616 6.95800 7.09779 7.17005 7.26148 7.56458 7.73230 7.81551 8.25745 8.48152 9.17483 9.81363 10.36183 11.19772 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.013941 B = 0.002538 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.940030 B =11030.916845 C =12156.183079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.191 4.191 3 C 0.173 3.827 4 O -0.386 6.386 5 C 0.079 3.921 6 C -0.139 4.139 7 C 0.520 3.480 8 O -0.555 6.555 9 N -0.601 5.601 10 C 0.114 3.886 11 C -0.140 4.140 12 C 0.177 3.823 13 N -0.576 5.576 14 C -0.246 4.246 15 H 0.061 0.939 16 C 0.011 3.989 17 N -0.889 5.889 18 Si 0.890 3.110 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.291 1.291 22 C 0.171 3.829 23 C -0.147 4.147 24 C -0.179 4.179 25 C -0.198 4.198 26 C -0.136 4.136 27 C 0.104 3.896 28 H 0.222 0.778 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.105 0.895 34 H 0.101 0.899 35 H 0.061 0.939 36 H 0.084 0.916 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.049 0.951 40 H 0.253 0.747 41 H 0.024 0.976 42 H 0.105 0.895 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.077 0.923 46 H 0.078 0.922 47 H 0.086 0.914 48 H 0.071 0.929 49 H 0.073 0.927 50 H 0.065 0.935 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.671 13.324 5.852 15.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.191 4.191 3 C 0.098 3.902 4 O -0.306 6.306 5 C 0.003 3.997 6 C -0.179 4.179 7 C 0.308 3.692 8 O -0.434 6.434 9 N -0.334 5.334 10 C -0.009 4.009 11 C -0.180 4.180 12 C 0.069 3.931 13 N -0.295 5.295 14 C -0.375 4.375 15 H 0.079 0.921 16 C -0.189 4.189 17 N -0.532 5.532 18 Si 0.720 3.280 19 H -0.202 1.202 20 H -0.215 1.215 21 H -0.218 1.218 22 C 0.044 3.956 23 C -0.167 4.167 24 C -0.216 4.216 25 C -0.236 4.236 26 C -0.175 4.175 27 C -0.019 4.019 28 H 0.238 0.762 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.123 0.877 34 H 0.119 0.881 35 H 0.079 0.921 36 H 0.103 0.897 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.043 0.957 42 H 0.122 0.878 43 H 0.106 0.894 44 H 0.108 0.892 45 H 0.096 0.904 46 H 0.097 0.903 47 H 0.104 0.896 48 H 0.090 0.910 49 H 0.092 0.908 50 H 0.083 0.917 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.476 13.466 5.666 15.602 hybrid contribution 0.241 -0.276 -1.071 1.132 sum -5.235 13.190 4.595 14.916 Atomic orbital electron populations 1.24968 0.95893 0.98127 1.00480 1.22591 0.93940 1.01834 1.00763 1.19049 0.84579 0.87311 0.99272 1.87879 1.21892 1.35648 1.85140 1.22177 0.79511 0.96841 1.01213 1.21487 0.93109 0.98884 1.04445 1.20262 0.89850 0.82087 0.76999 1.90672 1.65372 1.38533 1.48868 1.48130 1.07627 1.15337 1.62312 1.21668 0.78986 0.99763 1.00447 1.22376 1.00554 0.94012 1.01064 1.20316 0.91024 0.87290 0.94464 1.43855 1.67061 1.13553 1.05000 1.18960 1.42090 0.94074 0.82400 0.92149 1.24995 0.98428 0.98217 0.97225 1.69982 1.42776 1.04941 1.35520 0.86425 0.77720 0.78100 0.85752 1.20207 1.21521 1.21834 1.20668 0.85347 0.95720 0.93831 1.23382 0.97460 0.94747 1.01139 1.22831 1.01326 1.03164 0.94280 1.22864 1.03295 1.03926 0.93528 1.22325 0.99173 0.94669 1.01382 1.21974 0.94578 0.86728 0.98638 0.76170 0.90709 0.90623 0.92128 0.91982 0.87706 0.88101 0.92058 0.89735 0.91449 0.91369 0.93230 0.93726 0.95721 0.87759 0.89446 0.89205 0.90416 0.90323 0.89572 0.90991 0.90825 0.91659 0.90288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.53 19.25 29.55 0.57 -0.97 16 2 C -0.19 -1.97 13.73 -37.12 -0.51 -2.48 16 3 C 0.17 1.63 6.41 34.37 0.22 1.85 16 4 O -0.39 -4.50 10.30 -35.23 -0.36 -4.86 16 5 C 0.08 0.88 5.23 37.16 0.19 1.08 16 6 C -0.14 -1.59 4.42 -27.88 -0.12 -1.71 16 7 C 0.52 7.52 7.70 -10.99 -0.08 7.43 16 8 O -0.56 -9.61 15.40 5.55 0.09 -9.52 16 9 N -0.60 -8.60 2.97 -172.76 -0.51 -9.11 16 10 C 0.11 1.68 6.43 -3.71 -0.02 1.66 16 11 C -0.14 -2.40 5.30 -26.61 -0.14 -2.54 16 12 C 0.18 3.26 2.60 -67.89 -0.18 3.08 16 13 N -0.58 -12.88 2.39 -165.62 -0.40 -13.28 16 14 C -0.25 -6.18 8.28 -15.06 -0.12 -6.31 16 15 H 0.06 1.57 6.86 -52.48 -0.36 1.21 16 16 C 0.01 0.28 4.92 -17.43 -0.09 0.19 16 17 N -0.89 -24.13 11.33 55.49 0.63 -23.50 16 18 Si 0.89 21.08 29.61 -169.99 -5.03 16.04 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 C 0.17 3.74 5.47 -4.05 -0.02 3.71 16 23 C -0.15 -2.80 6.01 -90.62 -0.54 -3.35 16 24 C -0.18 -3.27 10.18 -26.73 -0.27 -3.54 16 25 C -0.20 -3.25 10.25 -26.73 -0.27 -3.53 16 26 C -0.14 -2.33 5.31 -26.60 -0.14 -2.47 16 27 C 0.10 1.36 6.34 -3.69 -0.02 1.34 16 28 H 0.22 1.05 7.80 -54.10 -0.42 0.63 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 32 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 33 H 0.10 1.17 7.69 -51.93 -0.40 0.77 16 34 H 0.10 0.99 7.94 -51.93 -0.41 0.57 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.08 1.31 7.01 -51.93 -0.36 0.95 16 37 H 0.07 1.15 8.11 -51.93 -0.42 0.73 16 38 H 0.07 1.33 7.03 -51.93 -0.36 0.97 16 39 H 0.05 0.87 7.86 -51.93 -0.41 0.46 16 40 H 0.25 6.71 8.31 -40.82 -0.34 6.37 16 41 H 0.02 0.52 8.02 -51.93 -0.42 0.11 16 42 H 0.10 2.63 5.05 -51.93 -0.26 2.36 16 43 H 0.09 1.66 8.11 -51.93 -0.42 1.24 16 44 H 0.09 1.77 8.03 -51.93 -0.42 1.35 16 45 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 46 H 0.08 1.14 8.14 -51.92 -0.42 0.71 16 47 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 48 H 0.07 1.42 7.71 -51.93 -0.40 1.02 16 49 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 50 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 51 H 0.08 0.88 5.93 -51.93 -0.31 0.57 16 LS Contribution 413.95 15.07 6.24 6.24 Total: -1.00 -29.73 413.95 -9.65 -39.38 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -8.74 Total: 5.16 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -1.56 Total: -6.54 kcal Atomic # 7 Polarization: -45.61 SS G_CDS: -0.28 Total: -45.89 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: -0.28 Total: -14.39 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.04 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -29.73 -9.65 -39.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723648128.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.049 kcal (2) G-P(sol) polarization free energy of solvation -29.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds