Wall clock time and date at job start Tue Mar 31 2020 19:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 O 1.42905 * 109.46963 * 337.28699 * 3 2 1 5 5 C 1.42899 * 113.99795 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.47077 * 180.02562 * 5 4 3 7 7 C 1.50698 * 109.47051 * 180.02562 * 6 5 4 8 8 O 1.21286 * 120.00247 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00072 * 179.97438 * 7 6 5 10 10 C 1.46922 * 120.63151 * 180.02562 * 9 7 6 11 11 C 1.53190 * 108.77482 * 233.62944 * 10 9 7 12 12 C 1.53043 * 109.31158 * 305.36294 * 11 10 9 13 13 N 1.46498 * 109.46119 * 181.38501 * 12 11 10 14 14 C 1.36938 * 119.99955 * 300.00481 * 13 12 11 15 15 H 1.08004 * 120.00344 * 33.56246 * 14 13 12 16 16 C 1.38818 * 119.99780 * 213.56287 * 14 13 12 17 17 N 1.31615 * 120.00012 * 22.63141 * 16 14 13 18 18 Si 1.86799 * 119.99908 * 202.34894 * 16 14 13 19 19 H 1.48506 * 109.47344 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46972 * 120.00266 * 18 16 14 21 21 H 1.48495 * 109.47357 * 239.99824 * 18 16 14 22 22 C 1.46494 * 120.00212 * 119.99815 * 13 12 11 23 23 C 1.52998 * 109.47574 * 274.70537 * 22 13 12 24 24 C 1.53001 * 117.49890 * 243.62240 * 23 22 13 25 25 C 1.52993 * 117.50106 * 174.99562 * 23 22 13 26 26 C 1.53041 * 109.53636 * 61.36546 * 12 11 10 27 27 C 1.46929 * 120.62702 * 0.02562 * 9 7 6 28 28 H 4.38447 * 5.44472 * 179.97438 * 4 1 2 29 29 H 1.08996 * 109.47228 * 217.28955 * 3 2 1 30 30 H 1.09001 * 109.46821 * 97.28607 * 3 2 1 31 31 H 1.09000 * 109.47240 * 60.00007 * 5 4 3 32 32 H 1.09002 * 109.46754 * 300.00151 * 5 4 3 33 33 H 1.09000 * 109.47315 * 59.99766 * 6 5 4 34 34 H 1.08995 * 109.46917 * 299.99831 * 6 5 4 35 35 H 1.08997 * 109.58789 * 113.84287 * 10 9 7 36 36 H 1.08997 * 109.70619 * 353.48372 * 10 9 7 37 37 H 1.08999 * 109.50201 * 185.41175 * 11 10 9 38 38 H 1.08998 * 109.52792 * 65.33241 * 11 10 9 39 39 H 1.08995 * 109.46098 * 301.35628 * 12 11 10 40 40 H 0.96997 * 120.00364 * 180.02562 * 17 16 14 41 41 H 1.08997 * 109.47082 * 34.70537 * 22 13 12 42 42 H 1.09000 * 109.47453 * 154.69872 * 22 13 12 43 43 H 1.09004 * 115.54955 * 29.32329 * 23 22 13 44 44 H 1.08994 * 117.49886 * 359.97438 * 24 23 22 45 45 H 1.08999 * 117.49623 * 145.02290 * 24 23 22 46 46 H 1.09008 * 117.50105 * 214.97797 * 25 23 22 47 47 H 1.08994 * 117.50197 * 0.02562 * 25 23 22 48 48 H 1.09003 * 109.49498 * 58.58668 * 26 12 11 49 49 H 1.09001 * 109.49807 * 178.68214 * 26 12 11 50 50 H 1.09002 * 109.58391 * 246.15744 * 27 9 7 51 51 H 1.08998 * 109.58468 * 6.43695 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 8 3.1229 -1.2420 0.5202 5 6 4.5475 -1.3452 0.5643 6 6 4.9426 -2.7089 1.1345 7 6 6.4450 -2.8175 1.1816 8 8 7.1321 -1.8952 0.7965 9 7 7.0251 -3.9396 1.6515 10 6 8.4884 -4.0601 1.7042 11 6 8.9042 -5.3414 0.9747 12 6 8.1534 -6.5321 1.5753 13 7 8.5732 -7.7637 0.9021 14 6 8.3892 -7.9031 -0.4476 15 1 8.4651 -7.0417 -1.0949 16 6 8.1050 -9.1515 -0.9841 17 7 7.5802 -10.0899 -0.2251 18 14 8.4602 -9.4968 -2.7852 19 1 9.0395 -8.2841 -3.4170 20 1 9.4259 -10.6198 -2.8928 21 1 7.1981 -9.8614 -3.4776 22 6 9.1900 -8.8461 1.6729 23 6 10.6922 -8.5872 1.8039 24 6 11.6421 -9.5960 1.1552 25 6 11.5010 -9.5478 2.6779 26 6 6.6475 -6.3357 1.3864 27 6 6.2061 -5.0655 2.1209 28 1 -1.0498 -0.0003 0.0003 29 1 3.0090 0.8184 0.6226 30 1 3.0093 0.1312 -1.0194 31 1 4.9496 -0.5554 1.1989 32 1 4.9505 -1.2424 -0.4432 33 1 4.5406 -3.4985 0.4996 34 1 4.5395 -2.8121 2.1419 35 1 8.8139 -4.1093 2.7433 36 1 8.9459 -3.1983 1.2184 37 1 9.9775 -5.4931 1.0887 38 1 8.6597 -5.2536 -0.0839 39 1 8.3794 -6.6047 2.6391 40 1 7.3820 -10.9624 -0.5998 41 1 8.7405 -8.8874 2.6650 42 1 9.0280 -9.7947 1.1610 43 1 10.9908 -7.5389 1.7987 44 1 11.1969 -10.4443 0.6354 45 1 12.5659 -9.2115 0.7230 46 1 12.3320 -9.1315 3.2475 47 1 10.9630 -10.3644 3.1593 48 1 6.4238 -6.2382 0.3241 49 1 6.1146 -7.1950 1.7935 50 1 6.3458 -5.1965 3.1940 51 1 5.1554 -4.8656 1.9110 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723648128.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:37 Heat of formation + Delta-G solvation = 4.770083 kcal Electronic energy + Delta-G solvation = -29061.032233 eV Core-core repulsion = 25156.044351 eV Total energy + Delta-G solvation = -3904.987882 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.27006 -39.40161 -38.91780 -37.95333 -36.15768 -34.49079 -33.88876 -32.88802 -31.65459 -31.38825 -28.09128 -27.90748 -26.50201 -24.95474 -23.91867 -23.39038 -23.07934 -21.46991 -21.09084 -20.04430 -19.30550 -18.67053 -18.10858 -17.45445 -17.24695 -16.85397 -16.56142 -16.36518 -16.28538 -15.84129 -15.70800 -15.26200 -15.00926 -14.86714 -14.70001 -14.21862 -14.18107 -13.68687 -13.65186 -13.33686 -13.20259 -13.08490 -12.77445 -12.69628 -12.60337 -12.46028 -12.37496 -12.30279 -12.08052 -11.93860 -11.82487 -11.56076 -11.47876 -11.45342 -11.32473 -10.93603 -10.81336 -10.65634 -10.57245 -10.27883 -9.62254 -8.52127 -7.78225 -5.31448 1.41049 1.43579 1.47095 1.53856 1.58292 1.82234 2.03627 2.52304 2.90466 3.09466 3.30397 3.51438 3.61296 3.67797 3.94963 4.02990 4.09341 4.12419 4.23276 4.25638 4.28433 4.30881 4.37330 4.40074 4.44405 4.49916 4.53149 4.70485 4.77280 4.79000 4.83645 4.84274 4.87682 4.88185 4.93006 5.03071 5.10082 5.12239 5.20652 5.26317 5.36710 5.39908 5.48883 5.62833 5.69958 5.75916 5.95463 6.06779 6.42530 6.52546 6.59700 7.12055 7.24382 7.96852 8.44797 9.18769 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.013941 B = 0.002538 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.940030 B =11030.916845 C =12156.183079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.239 4.239 3 C 0.167 3.833 4 O -0.401 6.401 5 C 0.083 3.917 6 C -0.134 4.134 7 C 0.518 3.482 8 O -0.587 6.587 9 N -0.604 5.604 10 C 0.121 3.879 11 C -0.126 4.126 12 C 0.172 3.828 13 N -0.589 5.589 14 C -0.235 4.235 15 H 0.048 0.952 16 C -0.033 4.033 17 N -0.913 5.913 18 Si 0.935 3.065 19 H -0.276 1.276 20 H -0.292 1.292 21 H -0.295 1.295 22 C 0.173 3.827 23 C -0.161 4.161 24 C -0.189 4.189 25 C -0.166 4.166 26 C -0.127 4.127 27 C 0.114 3.886 28 H 0.254 0.746 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.108 0.892 34 H 0.124 0.876 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.035 0.965 39 H 0.066 0.934 40 H 0.248 0.752 41 H 0.027 0.973 42 H 0.071 0.929 43 H 0.090 0.910 44 H 0.067 0.933 45 H 0.093 0.907 46 H 0.108 0.892 47 H 0.089 0.911 48 H 0.039 0.961 49 H 0.059 0.941 50 H 0.092 0.908 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.974 14.614 7.579 17.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.239 4.239 3 C 0.092 3.908 4 O -0.321 6.321 5 C 0.007 3.993 6 C -0.173 4.173 7 C 0.308 3.692 8 O -0.468 6.468 9 N -0.336 5.336 10 C -0.002 4.002 11 C -0.166 4.166 12 C 0.066 3.934 13 N -0.308 5.308 14 C -0.366 4.366 15 H 0.065 0.935 16 C -0.229 4.229 17 N -0.559 5.559 18 Si 0.766 3.234 19 H -0.201 1.201 20 H -0.219 1.219 21 H -0.222 1.222 22 C 0.047 3.953 23 C -0.182 4.182 24 C -0.226 4.226 25 C -0.204 4.204 26 C -0.167 4.167 27 C -0.009 4.009 28 H 0.270 0.730 29 H 0.109 0.891 30 H 0.103 0.897 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.126 0.874 34 H 0.143 0.857 35 H 0.105 0.895 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.054 0.946 39 H 0.084 0.916 40 H 0.057 0.943 41 H 0.045 0.955 42 H 0.089 0.911 43 H 0.109 0.891 44 H 0.085 0.915 45 H 0.111 0.889 46 H 0.127 0.873 47 H 0.108 0.892 48 H 0.058 0.942 49 H 0.077 0.923 50 H 0.110 0.890 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.779 14.770 7.402 17.503 hybrid contribution 0.306 -0.641 -1.600 1.751 sum -5.473 14.130 5.802 16.225 Atomic orbital electron populations 1.25860 0.96818 0.96335 0.98832 1.23097 0.94881 1.03542 1.02402 1.19242 0.84597 0.86897 1.00095 1.87836 1.21829 1.37011 1.85430 1.22091 0.79539 0.96863 1.00832 1.21470 0.90720 0.99169 1.05938 1.20751 0.90991 0.81523 0.75962 1.90659 1.66367 1.39677 1.50091 1.48211 1.07519 1.15662 1.62232 1.21561 0.79552 0.97723 1.01340 1.22183 1.00330 0.94850 0.99285 1.20512 0.91949 0.85965 0.95012 1.44028 1.67643 1.14754 1.04371 1.18967 1.40279 0.93415 0.83897 0.93477 1.25445 0.99414 0.98494 0.99587 1.70081 1.44437 1.04944 1.36401 0.85705 0.77107 0.77578 0.83051 1.20124 1.21880 1.22209 1.20498 0.87398 0.94250 0.93141 1.23137 0.95756 0.95390 1.03894 1.22836 1.01514 1.02185 0.96108 1.22933 1.02771 1.02340 0.92323 1.22149 0.98130 0.96562 0.99839 1.21971 0.95554 0.84022 0.99306 0.73013 0.89148 0.89750 0.91713 0.92850 0.87355 0.85746 0.89498 0.90515 0.91527 0.94566 0.91575 0.94300 0.95521 0.91078 0.89139 0.91453 0.88875 0.87331 0.89231 0.94226 0.92272 0.88978 0.87812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 19.25 74.32 1.43 -1.07 16 2 C -0.24 -4.68 13.73 31.13 0.43 -4.25 16 3 C 0.17 2.99 6.41 70.18 0.45 3.44 16 4 O -0.40 -8.90 10.30 -148.98 -1.53 -10.44 16 5 C 0.08 1.77 5.23 71.98 0.38 2.14 16 6 C -0.13 -2.78 4.42 29.85 0.13 -2.65 16 7 C 0.52 14.20 7.70 87.66 0.67 14.87 16 8 O -0.59 -19.85 15.40 -3.05 -0.05 -19.90 16 9 N -0.60 -16.14 2.97 -818.86 -2.43 -18.57 16 10 C 0.12 3.38 6.43 86.36 0.56 3.93 16 11 C -0.13 -4.28 5.30 30.67 0.16 -4.12 16 12 C 0.17 6.25 2.60 45.02 0.12 6.37 16 13 N -0.59 -26.65 2.39 -677.90 -1.62 -28.27 16 14 C -0.23 -12.13 8.28 84.03 0.70 -11.44 16 15 H 0.05 2.54 6.86 -2.91 -0.02 2.52 16 16 C -0.03 -1.75 4.92 84.86 0.42 -1.34 16 17 N -0.91 -51.08 11.33 21.65 0.25 -50.83 16 18 Si 0.94 44.45 29.61 68.60 2.03 46.48 16 19 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 20 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 21 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 22 C 0.17 7.63 5.47 86.38 0.47 8.11 16 23 C -0.16 -6.01 6.01 -10.80 -0.06 -6.07 16 24 C -0.19 -6.75 10.18 30.60 0.31 -6.44 16 25 C -0.17 -5.05 10.25 30.59 0.31 -4.73 16 26 C -0.13 -4.31 5.31 30.68 0.16 -4.14 16 27 C 0.11 2.70 6.34 86.37 0.55 3.25 16 28 H 0.25 1.68 7.80 -4.43 -0.03 1.65 16 29 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.06 1.31 8.10 -2.39 -0.02 1.29 16 32 H 0.05 1.20 8.10 -2.39 -0.02 1.18 16 33 H 0.11 2.22 7.69 -2.39 -0.02 2.20 16 34 H 0.12 2.03 7.94 -2.39 -0.02 2.01 16 35 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.08 2.30 7.01 -2.39 -0.02 2.29 16 37 H 0.07 2.24 8.11 -2.39 -0.02 2.22 16 38 H 0.04 1.44 7.03 -2.39 -0.02 1.42 16 39 H 0.07 2.20 7.86 -2.39 -0.02 2.18 16 40 H 0.25 13.59 8.31 -92.71 -0.77 12.82 16 41 H 0.03 1.13 8.02 -2.39 -0.02 1.11 16 42 H 0.07 3.68 5.05 -2.39 -0.01 3.67 16 43 H 0.09 3.31 8.11 -2.38 -0.02 3.29 16 44 H 0.07 2.70 8.03 -2.39 -0.02 2.68 16 45 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 46 H 0.11 2.70 8.14 -2.38 -0.02 2.68 16 47 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 48 H 0.04 1.58 7.71 -2.39 -0.02 1.57 16 49 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 50 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 51 H 0.10 2.00 5.93 -2.39 -0.01 1.98 16 Total: -1.00 -66.30 413.95 4.71 -61.59 By element: Atomic # 1 Polarization: 23.19 SS G_CDS: 0.89 Total: 24.08 kcal Atomic # 6 Polarization: -11.32 SS G_CDS: 7.18 Total: -4.14 kcal Atomic # 7 Polarization: -93.86 SS G_CDS: -3.81 Total: -97.67 kcal Atomic # 8 Polarization: -28.75 SS G_CDS: -1.58 Total: -30.33 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -66.30 4.71 -61.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723648128.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.357 kcal (2) G-P(sol) polarization free energy of solvation -66.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds