Wall clock time and date at job start Tue Mar 31 2020 19:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47227 * 2 1 4 4 O 1.42904 * 109.47096 * 180.02562 * 3 2 1 5 5 C 1.35914 * 116.99970 * 179.97438 * 4 3 2 6 6 C 1.38854 * 119.98308 * 0.02562 * 5 4 3 7 7 C 1.38243 * 120.23513 * 179.97438 * 6 5 4 8 8 C 1.38009 * 120.21015 * 359.74777 * 7 6 5 9 9 C 1.39570 * 119.96028 * 0.51139 * 8 7 6 10 10 C 1.47857 * 120.11276 * 179.76986 * 9 8 7 11 11 O 1.21556 * 119.99514 * 179.72307 * 10 9 8 12 12 N 1.34770 * 120.00422 * 359.71888 * 10 9 8 13 13 C 1.46500 * 120.00423 * 180.02562 * 12 10 9 14 14 C 1.52995 * 109.47361 * 180.02562 * 13 12 10 15 15 H 1.08994 * 109.47294 * 64.99703 * 14 13 12 16 16 N 1.46505 * 109.47024 * 304.99744 * 14 13 12 17 17 C 1.36931 * 119.99788 * 155.00126 * 16 14 13 18 18 H 1.08002 * 120.00438 * 0.02562 * 17 16 14 19 19 C 1.38817 * 119.99680 * 179.72358 * 17 16 14 20 20 N 1.31614 * 119.99888 * 0.27479 * 19 17 16 21 21 Si 1.86803 * 119.99862 * 180.27671 * 19 17 16 22 22 H 1.48496 * 109.47141 * 59.99751 * 21 19 17 23 23 H 1.48490 * 109.47071 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46993 * 300.00028 * 21 19 17 25 25 C 1.53006 * 109.47104 * 185.00342 * 14 13 12 26 26 C 1.53000 * 109.47536 * 64.99279 * 25 14 13 27 27 C 1.52996 * 109.47080 * 185.00361 * 25 14 13 28 28 C 1.38451 * 119.98192 * 179.97438 * 5 4 3 29 29 H 1.09005 * 109.46735 * 300.00252 * 1 2 3 30 30 H 1.09000 * 109.47488 * 59.99923 * 1 2 3 31 31 H 1.09001 * 109.47017 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46581 * 240.00272 * 2 1 3 33 33 H 1.08994 * 109.47432 * 120.00549 * 2 1 3 34 34 H 1.08997 * 109.47304 * 59.99926 * 3 2 1 35 35 H 1.09001 * 109.47183 * 299.99910 * 3 2 1 36 36 H 1.08002 * 119.88076 * 359.96214 * 6 5 4 37 37 H 1.07999 * 119.89521 * 180.02562 * 7 6 5 38 38 H 1.07996 * 120.02116 * 180.25266 * 8 7 6 39 39 H 0.96998 * 119.99979 * 359.97438 * 12 10 9 40 40 H 1.09005 * 109.46957 * 59.99705 * 13 12 10 41 41 H 1.09002 * 109.46680 * 300.00186 * 13 12 10 42 42 H 0.97000 * 119.99792 * 334.99921 * 16 14 13 43 43 H 0.97005 * 119.99715 * 179.97438 * 20 19 17 44 44 H 1.09005 * 109.46373 * 304.99589 * 25 14 13 45 45 H 1.09001 * 109.46343 * 60.00562 * 26 25 14 46 46 H 1.09001 * 109.46730 * 179.97438 * 26 25 14 47 47 H 1.08996 * 109.46957 * 300.00571 * 26 25 14 48 48 H 1.08998 * 109.47562 * 59.98997 * 27 25 14 49 49 H 1.08999 * 109.47396 * 179.97438 * 27 25 14 50 50 H 1.09005 * 109.46888 * 299.98914 * 27 25 14 51 51 H 1.08002 * 120.10596 * 0.04948 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4424 -0.0006 5 6 4.0861 2.6534 -0.0012 6 6 3.3295 3.8177 -0.0007 7 6 3.9517 5.0522 -0.0008 8 6 5.3293 5.1356 0.0038 9 6 6.0981 3.9707 -0.0021 10 6 7.5742 4.0561 -0.0023 11 8 8.2416 3.0402 -0.0024 12 7 8.1796 5.2601 -0.0024 13 6 9.6422 5.3447 -0.0032 14 6 10.0681 6.8142 -0.0025 15 1 9.7526 7.2835 0.9292 16 7 9.4425 7.5044 -1.1333 17 6 9.2356 8.8570 -1.0802 18 1 9.5340 9.4150 -0.2049 19 6 8.6481 9.5119 -2.1539 20 7 8.2850 8.8319 -3.2207 21 14 8.3729 11.3582 -2.0847 22 1 9.6774 12.0471 -1.9144 23 1 7.7343 11.8111 -3.3464 24 1 7.4877 11.6841 -0.9377 25 6 11.5902 6.9041 -0.1291 26 6 12.0219 6.3580 -1.4916 27 6 12.0271 8.3649 -0.0033 28 6 5.4687 2.7254 -0.0013 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8932 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.6767 1.9563 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 2.2511 3.7587 -0.0004 37 1 3.3579 5.9543 0.0000 38 1 5.8122 6.1016 0.0079 39 1 7.6470 6.0708 -0.0028 40 1 10.0341 4.8528 -0.8935 41 1 10.0350 4.8525 0.8865 42 1 9.1749 7.0033 -1.9195 43 1 7.8741 9.2895 -3.9709 44 1 12.0558 6.3162 0.6620 45 1 11.5562 6.9459 -2.2826 46 1 13.1063 6.4225 -1.5818 47 1 11.7107 5.3173 -1.5811 48 1 11.7195 8.7539 0.9674 49 1 13.1115 8.4290 -0.0930 50 1 11.5615 8.9528 -0.7944 51 1 6.0583 1.8205 -0.0017 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753831566.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:42 Heat of formation + Delta-G solvation = -56.615259 kcal Electronic energy + Delta-G solvation = -28646.446917 eV Core-core repulsion = 24738.797167 eV Total energy + Delta-G solvation = -3907.649750 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.43316 -39.33544 -37.56522 -36.97280 -34.28790 -33.88611 -32.91513 -31.27463 -30.41892 -29.87831 -27.83690 -26.88299 -26.35254 -24.32816 -23.35728 -22.44878 -22.15937 -21.46507 -20.13390 -19.03066 -18.29832 -17.25714 -16.56335 -16.55509 -16.18087 -15.95479 -15.33899 -15.19409 -14.61040 -14.38996 -14.25873 -14.06061 -13.92712 -13.66183 -13.41830 -13.12219 -13.01654 -12.81823 -12.58577 -12.51091 -12.22786 -11.91483 -11.88959 -11.56042 -11.55393 -11.30566 -11.00793 -10.98009 -10.94707 -10.89075 -10.81743 -10.55077 -10.27851 -10.16331 -9.92545 -9.65177 -9.46683 -9.07767 -8.94095 -8.58969 -8.30343 -7.03725 -5.82654 -3.11617 0.85729 1.38534 2.89023 3.04742 3.38106 3.43950 3.45042 3.59965 3.94505 4.48287 4.50053 4.52770 4.70988 4.77910 4.82568 4.96813 5.02943 5.09592 5.19707 5.24187 5.35724 5.40798 5.42629 5.51322 5.53718 5.56054 5.66740 5.74215 5.79210 5.85343 5.89009 5.90772 6.11290 6.17099 6.24152 6.33866 6.34820 6.36672 6.43688 6.55322 6.56736 6.65685 6.71231 6.83079 6.94266 7.08539 7.27283 7.30251 7.65042 7.92737 8.34432 8.54210 9.46600 10.01541 10.37959 11.38838 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.013843 B = 0.002536 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.195940 B =11037.711009 C =12620.287336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.058 3.942 4 O -0.315 6.315 5 C 0.117 3.883 6 C -0.189 4.189 7 C -0.086 4.086 8 C -0.116 4.116 9 C -0.089 4.089 10 C 0.554 3.446 11 O -0.549 6.549 12 N -0.704 5.704 13 C 0.112 3.888 14 C 0.167 3.833 15 H 0.054 0.946 16 N -0.717 5.717 17 C -0.237 4.237 18 H 0.072 0.928 19 C -0.010 4.010 20 N -0.928 5.928 21 Si 0.901 3.099 22 H -0.287 1.287 23 H -0.293 1.293 24 H -0.287 1.287 25 C -0.107 4.107 26 C -0.141 4.141 27 C -0.141 4.141 28 C -0.095 4.095 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.128 0.872 37 H 0.132 0.868 38 H 0.136 0.864 39 H 0.410 0.590 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.386 0.614 43 H 0.256 0.744 44 H 0.049 0.951 45 H 0.071 0.929 46 H 0.037 0.963 47 H 0.043 0.957 48 H 0.039 0.961 49 H 0.032 0.968 50 H 0.085 0.915 51 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.381 -12.146 7.808 18.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.017 4.017 4 O -0.229 6.229 5 C 0.072 3.928 6 C -0.208 4.208 7 C -0.104 4.104 8 C -0.135 4.135 9 C -0.092 4.092 10 C 0.340 3.660 11 O -0.428 6.428 12 N -0.355 5.355 13 C -0.012 4.012 14 C 0.056 3.944 15 H 0.072 0.928 16 N -0.360 5.360 17 C -0.368 4.368 18 H 0.090 0.910 19 C -0.206 4.206 20 N -0.576 5.576 21 Si 0.733 3.267 22 H -0.213 1.213 23 H -0.219 1.219 24 H -0.214 1.214 25 C -0.129 4.129 26 C -0.198 4.198 27 C -0.199 4.199 28 C -0.115 4.115 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.146 0.854 37 H 0.150 0.850 38 H 0.153 0.847 39 H 0.248 0.752 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.220 0.780 43 H 0.065 0.935 44 H 0.068 0.932 45 H 0.090 0.910 46 H 0.056 0.944 47 H 0.062 0.938 48 H 0.058 0.942 49 H 0.051 0.949 50 H 0.104 0.896 51 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -10.833 -12.846 7.833 18.540 hybrid contribution -0.647 1.574 -0.372 1.742 sum -11.481 -11.272 7.461 17.735 Atomic orbital electron populations 1.21693 0.94270 1.02525 1.02226 1.21486 0.95978 0.94882 1.03834 1.22877 0.78592 0.98831 1.01440 1.86064 1.21130 1.26811 1.88912 1.18774 0.91923 0.84201 0.97895 1.21389 1.00037 0.92411 1.06916 1.20904 0.94425 0.97165 0.97903 1.21397 0.94066 0.98098 0.99917 1.19777 0.93331 0.93321 1.02787 1.18151 0.87046 0.83844 0.76937 1.90737 1.66058 1.35156 1.50872 1.45903 1.08371 1.08201 1.73047 1.21780 0.79105 0.98591 1.01768 1.20561 0.91512 0.89234 0.93047 0.92833 1.42425 1.71338 1.05676 1.16513 1.19147 1.32915 0.84055 1.00686 0.90999 1.24712 1.01772 0.97549 0.96592 1.69648 1.46926 1.34618 1.06415 0.86364 0.77831 0.85914 0.76618 1.21339 1.21866 1.21367 1.21611 0.97792 0.96658 0.96820 1.21771 0.99294 1.00196 0.98530 1.21837 0.98825 0.96820 1.02389 1.20426 0.91154 0.98266 1.01639 0.92371 0.92330 0.91731 0.90734 0.90783 0.92035 0.91975 0.85370 0.85041 0.84670 0.75186 0.91240 0.91794 0.77993 0.93457 0.93238 0.90971 0.94432 0.93762 0.94173 0.94870 0.89575 0.84011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.91 37.16 0.37 -0.38 16 2 C -0.12 -0.85 6.30 -26.73 -0.17 -1.01 16 3 C 0.06 0.48 4.74 37.16 0.18 0.66 16 4 O -0.32 -3.80 10.13 -19.47 -0.20 -4.00 16 5 C 0.12 1.53 6.68 -39.28 -0.26 1.27 16 6 C -0.19 -2.15 9.03 -39.35 -0.36 -2.50 16 7 C -0.09 -1.02 10.03 -39.66 -0.40 -1.42 16 8 C -0.12 -1.61 9.54 -39.17 -0.37 -1.98 16 9 C -0.09 -1.39 5.87 -104.98 -0.62 -2.00 16 10 C 0.55 9.81 7.77 -12.33 -0.10 9.71 16 11 O -0.55 -11.15 16.35 5.32 0.09 -11.06 16 12 N -0.70 -11.96 5.34 -61.25 -0.33 -12.29 16 13 C 0.11 1.91 5.10 -4.04 -0.02 1.89 16 14 C 0.17 3.01 2.29 -67.93 -0.16 2.85 16 15 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 16 N -0.72 -15.65 3.53 -53.42 -0.19 -15.84 16 17 C -0.24 -5.79 7.75 -15.06 -0.12 -5.91 16 18 H 0.07 1.73 7.32 -52.49 -0.38 1.34 16 19 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 20 N -0.93 -26.04 13.06 55.49 0.72 -25.32 16 21 Si 0.90 21.07 29.55 -169.99 -5.02 16.05 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 25 C -0.11 -1.81 2.74 -90.62 -0.25 -2.06 16 26 C -0.14 -2.41 8.74 37.16 0.32 -2.09 16 27 C -0.14 -2.48 8.46 37.16 0.31 -2.16 16 28 C -0.10 -1.42 9.53 -39.02 -0.37 -1.79 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.45 7.66 -51.93 -0.40 0.05 16 35 H 0.06 0.47 7.66 -51.93 -0.40 0.07 16 36 H 0.13 1.11 6.28 -52.49 -0.33 0.78 16 37 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 38 H 0.14 1.84 6.40 -52.49 -0.34 1.51 16 39 H 0.41 6.90 6.17 -40.82 -0.25 6.65 16 40 H 0.07 1.26 6.35 -51.93 -0.33 0.93 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.39 9.32 7.80 -40.82 -0.32 9.00 16 43 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 44 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.07 1.45 7.47 -51.93 -0.39 1.06 16 46 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.04 0.72 6.46 -51.93 -0.34 0.39 16 48 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 49 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.09 1.78 5.99 -51.93 -0.31 1.47 16 51 H 0.14 2.17 7.65 -52.49 -0.40 1.77 16 LS Contribution 408.34 15.07 6.15 6.15 Total: -1.00 -29.10 408.34 -9.25 -38.35 By element: Atomic # 1 Polarization: 23.62 SS G_CDS: -8.39 Total: 15.23 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: -2.10 Total: -7.28 kcal Atomic # 7 Polarization: -53.66 SS G_CDS: 0.21 Total: -53.45 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -0.11 Total: -15.06 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -29.10 -9.25 -38.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753831566.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.261 kcal (2) G-P(sol) polarization free energy of solvation -29.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds