Wall clock time and date at job start Tue Mar 31 2020 19:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47227 * 2 1 4 4 O 1.42904 * 109.47096 * 180.02562 * 3 2 1 5 5 C 1.35914 * 116.99970 * 179.97438 * 4 3 2 6 6 C 1.38854 * 119.98308 * 0.02562 * 5 4 3 7 7 C 1.38243 * 120.23513 * 179.97438 * 6 5 4 8 8 C 1.38009 * 120.21015 * 359.74777 * 7 6 5 9 9 C 1.39570 * 119.96028 * 0.51139 * 8 7 6 10 10 C 1.47857 * 120.11276 * 179.76986 * 9 8 7 11 11 O 1.21556 * 119.99514 * 179.72307 * 10 9 8 12 12 N 1.34770 * 120.00422 * 359.71888 * 10 9 8 13 13 C 1.46500 * 120.00423 * 180.02562 * 12 10 9 14 14 C 1.52995 * 109.47361 * 180.02562 * 13 12 10 15 15 H 1.08994 * 109.47294 * 64.99703 * 14 13 12 16 16 N 1.46505 * 109.47024 * 304.99744 * 14 13 12 17 17 C 1.36931 * 119.99788 * 155.00126 * 16 14 13 18 18 H 1.08002 * 120.00438 * 0.02562 * 17 16 14 19 19 C 1.38817 * 119.99680 * 179.72358 * 17 16 14 20 20 N 1.31614 * 119.99888 * 0.27479 * 19 17 16 21 21 Si 1.86803 * 119.99862 * 180.27671 * 19 17 16 22 22 H 1.48496 * 109.47141 * 59.99751 * 21 19 17 23 23 H 1.48490 * 109.47071 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46993 * 300.00028 * 21 19 17 25 25 C 1.53006 * 109.47104 * 185.00342 * 14 13 12 26 26 C 1.53000 * 109.47536 * 64.99279 * 25 14 13 27 27 C 1.52996 * 109.47080 * 185.00361 * 25 14 13 28 28 C 1.38451 * 119.98192 * 179.97438 * 5 4 3 29 29 H 1.09005 * 109.46735 * 300.00252 * 1 2 3 30 30 H 1.09000 * 109.47488 * 59.99923 * 1 2 3 31 31 H 1.09001 * 109.47017 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46581 * 240.00272 * 2 1 3 33 33 H 1.08994 * 109.47432 * 120.00549 * 2 1 3 34 34 H 1.08997 * 109.47304 * 59.99926 * 3 2 1 35 35 H 1.09001 * 109.47183 * 299.99910 * 3 2 1 36 36 H 1.08002 * 119.88076 * 359.96214 * 6 5 4 37 37 H 1.07999 * 119.89521 * 180.02562 * 7 6 5 38 38 H 1.07996 * 120.02116 * 180.25266 * 8 7 6 39 39 H 0.96998 * 119.99979 * 359.97438 * 12 10 9 40 40 H 1.09005 * 109.46957 * 59.99705 * 13 12 10 41 41 H 1.09002 * 109.46680 * 300.00186 * 13 12 10 42 42 H 0.97000 * 119.99792 * 334.99921 * 16 14 13 43 43 H 0.97005 * 119.99715 * 179.97438 * 20 19 17 44 44 H 1.09005 * 109.46373 * 304.99589 * 25 14 13 45 45 H 1.09001 * 109.46343 * 60.00562 * 26 25 14 46 46 H 1.09001 * 109.46730 * 179.97438 * 26 25 14 47 47 H 1.08996 * 109.46957 * 300.00571 * 26 25 14 48 48 H 1.08998 * 109.47562 * 59.98997 * 27 25 14 49 49 H 1.08999 * 109.47396 * 179.97438 * 27 25 14 50 50 H 1.09005 * 109.46888 * 299.98914 * 27 25 14 51 51 H 1.08002 * 120.10596 * 0.04948 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4424 -0.0006 5 6 4.0861 2.6534 -0.0012 6 6 3.3295 3.8177 -0.0007 7 6 3.9517 5.0522 -0.0008 8 6 5.3293 5.1356 0.0038 9 6 6.0981 3.9707 -0.0021 10 6 7.5742 4.0561 -0.0023 11 8 8.2416 3.0402 -0.0024 12 7 8.1796 5.2601 -0.0024 13 6 9.6422 5.3447 -0.0032 14 6 10.0681 6.8142 -0.0025 15 1 9.7526 7.2835 0.9292 16 7 9.4425 7.5044 -1.1333 17 6 9.2356 8.8570 -1.0802 18 1 9.5340 9.4150 -0.2049 19 6 8.6481 9.5119 -2.1539 20 7 8.2850 8.8319 -3.2207 21 14 8.3729 11.3582 -2.0847 22 1 9.6774 12.0471 -1.9144 23 1 7.7343 11.8111 -3.3464 24 1 7.4877 11.6841 -0.9377 25 6 11.5902 6.9041 -0.1291 26 6 12.0219 6.3580 -1.4916 27 6 12.0271 8.3649 -0.0033 28 6 5.4687 2.7254 -0.0013 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8932 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.6767 1.9563 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 2.2511 3.7587 -0.0004 37 1 3.3579 5.9543 0.0000 38 1 5.8122 6.1016 0.0079 39 1 7.6470 6.0708 -0.0028 40 1 10.0341 4.8528 -0.8935 41 1 10.0350 4.8525 0.8865 42 1 9.1749 7.0033 -1.9195 43 1 7.8741 9.2895 -3.9709 44 1 12.0558 6.3162 0.6620 45 1 11.5562 6.9459 -2.2826 46 1 13.1063 6.4225 -1.5818 47 1 11.7107 5.3173 -1.5811 48 1 11.7195 8.7539 0.9674 49 1 13.1115 8.4290 -0.0930 50 1 11.5615 8.9528 -0.7944 51 1 6.0583 1.8205 -0.0017 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753831566.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:41 Heat of formation + Delta-G solvation = -72.822662 kcal Electronic energy + Delta-G solvation = -28647.149723 eV Core-core repulsion = 24738.797167 eV Total energy + Delta-G solvation = -3908.352556 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.51616 -40.54956 -38.91699 -38.16086 -35.41048 -34.81624 -34.70021 -32.39974 -31.91392 -31.11585 -29.32328 -27.78755 -27.51463 -25.83775 -24.82724 -23.48764 -23.33302 -22.32100 -21.36452 -20.36374 -19.60436 -19.04795 -17.66696 -17.37409 -17.26117 -17.06205 -16.74830 -16.44812 -16.19123 -15.79331 -15.38498 -15.13872 -15.04755 -14.85214 -14.66238 -14.64664 -14.44792 -13.82047 -13.62162 -13.53394 -13.27748 -13.06956 -12.85270 -12.77996 -12.75980 -12.67763 -12.43010 -12.32203 -12.26356 -12.14450 -11.94112 -11.89566 -11.77817 -11.53116 -11.38743 -11.16761 -11.06877 -10.78484 -10.22627 -9.93048 -9.30564 -8.90976 -7.82486 -5.08763 -0.24616 0.35680 1.52750 1.54194 1.59016 1.80088 1.96365 2.37917 2.63289 2.80648 3.50424 3.64710 3.74701 3.91034 3.94495 3.96052 3.96176 4.05972 4.15178 4.24132 4.29257 4.29928 4.36610 4.44774 4.47299 4.56564 4.57630 4.70309 4.77156 4.81082 4.87207 4.96831 5.00251 5.12157 5.13207 5.17859 5.19012 5.23813 5.26160 5.30677 5.34735 5.35226 5.35696 5.51377 5.61614 5.62074 5.66655 5.83079 6.36882 6.38075 6.53754 7.15211 7.45551 8.17021 8.42881 9.39949 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.013843 B = 0.002536 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.195940 B =11037.711009 C =12620.287336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.123 4.123 3 C 0.048 3.952 4 O -0.331 6.331 5 C 0.116 3.884 6 C -0.175 4.175 7 C -0.081 4.081 8 C -0.124 4.124 9 C -0.107 4.107 10 C 0.551 3.449 11 O -0.582 6.582 12 N -0.701 5.701 13 C 0.118 3.882 14 C 0.169 3.831 15 H 0.059 0.941 16 N -0.720 5.720 17 C -0.212 4.212 18 H 0.079 0.921 19 C -0.070 4.070 20 N -0.966 5.966 21 Si 0.956 3.044 22 H -0.286 1.286 23 H -0.306 1.306 24 H -0.278 1.278 25 C -0.105 4.105 26 C -0.134 4.134 27 C -0.137 4.137 28 C -0.115 4.115 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.163 0.837 37 H 0.161 0.839 38 H 0.134 0.866 39 H 0.411 0.589 40 H 0.057 0.943 41 H 0.079 0.921 42 H 0.373 0.627 43 H 0.245 0.755 44 H 0.079 0.921 45 H 0.036 0.964 46 H 0.055 0.945 47 H 0.048 0.952 48 H 0.049 0.951 49 H 0.051 0.949 50 H 0.050 0.950 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.672 -11.857 9.444 19.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.161 4.161 3 C -0.026 4.026 4 O -0.246 6.246 5 C 0.071 3.929 6 C -0.194 4.194 7 C -0.099 4.099 8 C -0.143 4.143 9 C -0.110 4.110 10 C 0.340 3.660 11 O -0.465 6.465 12 N -0.351 5.351 13 C -0.006 4.006 14 C 0.060 3.940 15 H 0.077 0.923 16 N -0.360 5.360 17 C -0.344 4.344 18 H 0.097 0.903 19 C -0.262 4.262 20 N -0.617 5.617 21 Si 0.787 3.213 22 H -0.212 1.212 23 H -0.233 1.233 24 H -0.205 1.205 25 C -0.126 4.126 26 C -0.191 4.191 27 C -0.194 4.194 28 C -0.134 4.134 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.181 0.819 37 H 0.179 0.821 38 H 0.152 0.848 39 H 0.250 0.750 40 H 0.075 0.925 41 H 0.097 0.903 42 H 0.205 0.795 43 H 0.054 0.946 44 H 0.097 0.903 45 H 0.055 0.945 46 H 0.074 0.926 47 H 0.067 0.933 48 H 0.068 0.932 49 H 0.070 0.930 50 H 0.069 0.931 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -12.109 -12.550 9.523 19.871 hybrid contribution -0.255 1.385 -0.807 1.623 sum -12.365 -11.165 8.716 18.802 Atomic orbital electron populations 1.21679 0.92609 1.03203 1.02822 1.21511 0.97281 0.93954 1.03347 1.23213 0.76571 1.00124 1.02706 1.86063 1.23341 1.26494 1.88681 1.18816 0.91380 0.85337 0.97378 1.21748 1.01647 0.91325 1.04675 1.21259 0.93641 0.98612 0.96367 1.21468 0.95152 0.97274 1.00357 1.19635 0.92055 0.94343 1.05009 1.18532 0.88102 0.83365 0.76041 1.90704 1.67028 1.36101 1.52620 1.45882 1.08383 1.08148 1.72719 1.21711 0.79258 0.97783 1.01862 1.20696 0.92244 0.89357 0.91664 0.92265 1.42491 1.71518 1.04975 1.17060 1.19426 1.29900 0.85084 1.00001 0.90288 1.25301 1.03361 1.00672 0.96883 1.69798 1.49259 1.35568 1.07091 0.85473 0.77532 0.82300 0.75995 1.21250 1.23311 1.20458 1.21584 0.96582 0.96933 0.97512 1.21687 1.00155 0.99767 0.97529 1.21756 0.99808 0.96400 1.01461 1.20387 0.92355 0.97518 1.03182 0.91635 0.91840 0.91086 0.91423 0.91182 0.90455 0.90812 0.81936 0.82094 0.84848 0.75048 0.92488 0.90282 0.79498 0.94557 0.90298 0.94480 0.92625 0.93322 0.93222 0.93014 0.93112 0.85591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 71.98 0.71 -0.42 16 2 C -0.12 -1.50 6.30 30.59 0.19 -1.30 16 3 C 0.05 0.70 4.74 71.98 0.34 1.04 16 4 O -0.33 -7.69 10.13 -92.59 -0.94 -8.63 16 5 C 0.12 2.94 6.68 22.47 0.15 3.09 16 6 C -0.18 -3.53 9.03 22.42 0.20 -3.32 16 7 C -0.08 -1.74 10.03 22.22 0.22 -1.51 16 8 C -0.12 -3.36 9.54 22.54 0.21 -3.14 16 9 C -0.11 -3.41 5.87 -20.10 -0.12 -3.53 16 10 C 0.55 20.09 7.77 86.79 0.67 20.76 16 11 O -0.58 -24.49 16.35 -3.89 -0.06 -24.56 16 12 N -0.70 -24.06 5.34 -465.96 -2.49 -26.55 16 13 C 0.12 3.97 5.10 86.38 0.44 4.41 16 14 C 0.17 5.93 2.29 44.99 0.10 6.03 16 15 H 0.06 2.05 8.08 -2.39 -0.02 2.03 16 16 N -0.72 -31.52 3.53 -322.93 -1.14 -32.66 16 17 C -0.21 -10.32 7.75 84.04 0.65 -9.67 16 18 H 0.08 3.70 7.32 -2.91 -0.02 3.68 16 19 C -0.07 -3.69 5.50 84.86 0.47 -3.22 16 20 N -0.97 -55.52 13.06 21.65 0.28 -55.23 16 21 Si 0.96 43.62 29.55 68.60 2.03 45.65 16 22 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 23 H -0.31 -14.55 7.11 99.48 0.71 -13.84 16 24 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 25 C -0.10 -3.34 2.74 -10.79 -0.03 -3.37 16 26 C -0.13 -4.48 8.74 71.98 0.63 -3.86 16 27 C -0.14 -4.52 8.46 71.98 0.61 -3.91 16 28 C -0.11 -3.51 9.53 22.63 0.22 -3.30 16 29 H 0.06 0.43 8.14 -2.38 -0.02 0.41 16 30 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.08 0.88 7.66 -2.39 -0.02 0.87 16 35 H 0.07 0.91 7.66 -2.39 -0.02 0.89 16 36 H 0.16 2.12 6.28 -2.91 -0.02 2.10 16 37 H 0.16 2.50 8.06 -2.91 -0.02 2.47 16 38 H 0.13 3.60 6.40 -2.91 -0.02 3.58 16 39 H 0.41 13.95 6.17 -92.71 -0.57 13.38 16 40 H 0.06 2.08 6.35 -2.38 -0.02 2.07 16 41 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 42 H 0.37 18.44 7.80 -92.71 -0.72 17.71 16 43 H 0.25 14.07 8.31 -92.70 -0.77 13.30 16 44 H 0.08 2.13 8.14 -2.38 -0.02 2.12 16 45 H 0.04 1.49 7.47 -2.39 -0.02 1.47 16 46 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 47 H 0.05 1.56 6.46 -2.39 -0.02 1.55 16 48 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 49 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 50 H 0.05 2.04 5.99 -2.38 -0.01 2.03 16 51 H 0.13 4.14 7.65 -2.91 -0.02 4.11 16 Total: -1.00 -64.17 408.34 3.00 -61.17 By element: Atomic # 1 Polarization: 46.38 SS G_CDS: -0.36 Total: 46.02 kcal Atomic # 6 Polarization: -10.90 SS G_CDS: 5.68 Total: -5.22 kcal Atomic # 7 Polarization: -111.10 SS G_CDS: -3.34 Total: -114.44 kcal Atomic # 8 Polarization: -32.18 SS G_CDS: -1.00 Total: -33.19 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -64.17 3.00 -61.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753831566.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.650 kcal (2) G-P(sol) polarization free energy of solvation -64.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds