Wall clock time and date at job start Tue Mar 31 2020 19:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.46828 * 2 1 4 4 O 1.42910 * 109.46849 * 179.97438 * 3 2 1 5 5 C 1.35905 * 116.99512 * 179.97438 * 4 3 2 6 6 C 1.38850 * 119.99122 * 0.02562 * 5 4 3 7 7 C 1.38248 * 120.24273 * 179.97438 * 6 5 4 8 8 C 1.38006 * 120.20526 * 359.74161 * 7 6 5 9 9 C 1.39562 * 119.96424 * 0.51463 * 8 7 6 10 10 C 1.47862 * 120.12027 * 179.76417 * 9 8 7 11 11 O 1.21545 * 120.00304 * 179.72287 * 10 9 8 12 12 N 1.34776 * 119.99378 * 359.72445 * 10 9 8 13 13 C 1.46500 * 119.99630 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.47304 * 179.97438 * 13 12 10 15 15 H 1.09003 * 109.47082 * 294.99890 * 14 13 12 16 16 N 1.46498 * 109.47009 * 54.99714 * 14 13 12 17 17 C 1.36935 * 120.00239 * 204.99963 * 16 14 13 18 18 H 1.08004 * 120.00069 * 0.02562 * 17 16 14 19 19 C 1.38811 * 120.00368 * 180.02562 * 17 16 14 20 20 N 1.31624 * 119.99540 * 359.72375 * 19 17 16 21 21 Si 1.86800 * 120.00451 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47364 * 179.72253 * 21 19 17 23 23 H 1.48508 * 109.46883 * 299.72375 * 21 19 17 24 24 H 1.48497 * 109.46870 * 59.72186 * 21 19 17 25 25 C 1.52995 * 109.47443 * 174.99839 * 14 13 12 26 26 C 1.53003 * 109.46977 * 60.00215 * 25 14 13 27 27 C 1.52998 * 109.47443 * 180.02562 * 25 14 13 28 28 C 1.38454 * 119.98293 * 180.02562 * 5 4 3 29 29 H 1.09005 * 109.47515 * 60.00363 * 1 2 3 30 30 H 1.09001 * 109.47263 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47565 * 299.99631 * 1 2 3 32 32 H 1.08997 * 109.47493 * 239.99617 * 2 1 3 33 33 H 1.08999 * 109.47115 * 119.99820 * 2 1 3 34 34 H 1.08997 * 109.47625 * 60.00057 * 3 2 1 35 35 H 1.08999 * 109.47126 * 299.99813 * 3 2 1 36 36 H 1.07998 * 119.87747 * 0.02562 * 6 5 4 37 37 H 1.08004 * 119.89523 * 180.02562 * 7 6 5 38 38 H 1.07997 * 120.02042 * 180.25304 * 8 7 6 39 39 H 0.96999 * 120.00577 * 359.97438 * 12 10 9 40 40 H 1.09008 * 109.47336 * 59.99723 * 13 12 10 41 41 H 1.08993 * 109.47303 * 299.99847 * 13 12 10 42 42 H 0.97004 * 119.99747 * 25.00702 * 16 14 13 43 43 H 0.97000 * 120.00481 * 0.27542 * 20 19 17 44 44 H 1.08996 * 109.47329 * 300.00343 * 25 14 13 45 45 H 1.09003 * 109.47348 * 60.00072 * 26 25 14 46 46 H 1.09004 * 109.47447 * 180.02562 * 26 25 14 47 47 H 1.08999 * 109.47360 * 299.99664 * 26 25 14 48 48 H 1.08994 * 109.47070 * 60.00091 * 27 25 14 49 49 H 1.09003 * 109.47532 * 180.02562 * 27 25 14 50 50 H 1.09003 * 109.47082 * 300.00051 * 27 25 14 51 51 H 1.08001 * 120.10500 * 0.04212 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0859 2.6535 0.0001 6 6 3.3294 3.8178 -0.0003 7 6 3.9515 5.0524 -0.0003 8 6 5.3290 5.1357 0.0056 9 6 6.0978 3.9710 0.0007 10 6 7.5740 4.0563 0.0018 11 8 8.2415 3.0405 0.0026 12 7 8.1793 5.2605 0.0019 13 6 9.6418 5.3451 0.0035 14 6 10.0677 6.8146 0.0026 15 1 9.7528 7.2836 -0.9296 16 7 9.4414 7.5052 1.1326 17 6 9.2345 8.8577 1.0790 18 1 9.5327 9.4154 0.2035 19 6 8.6415 9.5122 2.1499 20 7 8.2732 8.8318 3.2147 21 14 8.3586 11.3572 2.0765 22 1 7.7093 11.8089 3.3334 23 1 9.6613 12.0517 1.9150 24 1 7.4803 11.6777 0.9228 25 6 11.5897 6.9046 0.1300 26 6 12.2438 6.1834 -1.0502 27 6 12.0156 8.3741 0.1298 28 6 5.4685 2.7257 0.0001 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.6766 1.9563 -0.8900 36 1 2.2510 3.7587 0.0001 37 1 3.3575 5.9545 -0.0002 38 1 5.8118 6.1017 0.0098 39 1 7.6466 6.0711 0.0009 40 1 10.0353 4.8526 -0.8859 41 1 10.0332 4.8536 0.8941 42 1 9.1733 7.0043 1.9189 43 1 8.4197 7.8736 3.2528 44 1 11.9047 6.4356 1.0621 45 1 11.9289 6.6524 -1.9824 46 1 13.3282 6.2471 -0.9593 47 1 11.9405 5.1364 -1.0496 48 1 11.5496 8.8875 0.9708 49 1 13.1000 8.4382 0.2201 50 1 11.7006 8.8435 -0.8022 51 1 6.0582 1.8208 -0.0002 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753831567.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:45 Heat of formation + Delta-G solvation = -75.190671 kcal Electronic energy + Delta-G solvation = -28597.486977 eV Core-core repulsion = 24689.031737 eV Total energy + Delta-G solvation = -3908.455241 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.57852 -40.61754 -38.99677 -38.21536 -35.54492 -35.20487 -34.82053 -32.47438 -31.97631 -31.13829 -29.35340 -27.56016 -27.43976 -25.78817 -24.79975 -23.53254 -23.34649 -22.35954 -21.50401 -20.81921 -19.74856 -19.28481 -17.73272 -17.51988 -17.28500 -17.13420 -16.69601 -16.49736 -16.30810 -15.91398 -15.45923 -15.25182 -15.12172 -14.95869 -14.85519 -14.68309 -14.43558 -13.75337 -13.65277 -13.55563 -13.37451 -13.10113 -12.91155 -12.85926 -12.77185 -12.66231 -12.48097 -12.35861 -12.28803 -11.97435 -11.91362 -11.80247 -11.57958 -11.55065 -11.50143 -11.18272 -11.13767 -10.79546 -10.30497 -10.01828 -9.35023 -9.04842 -8.24653 -5.20575 -0.30309 0.31005 1.63067 1.70915 1.72890 1.86549 1.89933 2.30994 2.74775 2.76474 3.48976 3.56976 3.70608 3.71781 3.80067 3.92027 3.94484 4.02360 4.08669 4.18348 4.22538 4.22727 4.27915 4.35496 4.42276 4.52711 4.55192 4.58618 4.66443 4.79280 4.82928 4.85844 4.90087 4.98492 5.09056 5.10979 5.13951 5.17735 5.18657 5.20579 5.24778 5.30398 5.34025 5.41524 5.56008 5.57664 5.70371 5.74774 6.34503 6.43284 6.59623 7.05265 7.15818 8.05751 8.19075 9.25383 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.013038 B = 0.002561 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.980644 B =10931.481950 C =12716.076037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.123 4.123 3 C 0.048 3.952 4 O -0.331 6.331 5 C 0.118 3.882 6 C -0.174 4.174 7 C -0.080 4.080 8 C -0.125 4.125 9 C -0.109 4.109 10 C 0.552 3.448 11 O -0.580 6.580 12 N -0.704 5.704 13 C 0.120 3.880 14 C 0.178 3.822 15 H 0.057 0.943 16 N -0.739 5.739 17 C -0.302 4.302 18 H 0.071 0.929 19 C -0.103 4.103 20 N -0.979 5.979 21 Si 1.117 2.883 22 H -0.302 1.302 23 H -0.284 1.284 24 H -0.277 1.277 25 C -0.106 4.106 26 C -0.141 4.141 27 C -0.132 4.132 28 C -0.114 4.114 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.165 0.835 37 H 0.162 0.838 38 H 0.131 0.869 39 H 0.410 0.590 40 H 0.085 0.915 41 H 0.051 0.949 42 H 0.358 0.642 43 H 0.243 0.757 44 H 0.049 0.951 45 H 0.059 0.941 46 H 0.062 0.938 47 H 0.057 0.943 48 H 0.048 0.952 49 H 0.051 0.949 50 H 0.046 0.954 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.557 -11.658 -10.545 20.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.161 4.161 3 C -0.026 4.026 4 O -0.245 6.245 5 C 0.072 3.928 6 C -0.192 4.192 7 C -0.098 4.098 8 C -0.144 4.144 9 C -0.112 4.112 10 C 0.340 3.660 11 O -0.462 6.462 12 N -0.354 5.354 13 C -0.005 4.005 14 C 0.069 3.931 15 H 0.075 0.925 16 N -0.380 5.380 17 C -0.434 4.434 18 H 0.089 0.911 19 C -0.294 4.294 20 N -0.628 5.628 21 Si 0.944 3.056 22 H -0.228 1.228 23 H -0.211 1.211 24 H -0.203 1.203 25 C -0.128 4.128 26 C -0.198 4.198 27 C -0.190 4.190 28 C -0.134 4.134 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.182 0.818 37 H 0.180 0.820 38 H 0.149 0.851 39 H 0.248 0.752 40 H 0.103 0.897 41 H 0.069 0.931 42 H 0.190 0.810 43 H 0.053 0.947 44 H 0.067 0.933 45 H 0.079 0.921 46 H 0.081 0.919 47 H 0.076 0.924 48 H 0.067 0.933 49 H 0.070 0.930 50 H 0.065 0.935 51 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -12.527 -11.090 -9.942 19.462 hybrid contribution 0.616 -1.030 -0.112 1.206 sum -11.911 -12.121 -10.054 19.745 Atomic orbital electron populations 1.21679 0.92587 1.03219 1.02835 1.21511 0.97297 0.93928 1.03352 1.23227 0.76501 1.00168 1.02753 1.86066 1.23401 1.26423 1.88630 1.18811 0.91353 0.85379 0.97245 1.21762 1.01722 0.91265 1.04499 1.21265 0.93557 0.98697 0.96271 1.21442 0.95242 0.97152 1.00583 1.19611 0.91902 0.94406 1.05243 1.18558 0.88184 0.83273 0.75957 1.90704 1.67023 1.36028 1.52434 1.45904 1.08300 1.08211 1.73027 1.21713 0.79326 0.97619 1.01810 1.20617 0.92030 0.89194 0.91224 0.92529 1.42593 1.72823 1.05441 1.17185 1.20191 1.34965 0.85338 1.02881 0.91063 1.26822 0.99969 1.09378 0.93279 1.70992 1.52701 1.07944 1.31130 0.82729 0.76478 0.71045 0.75301 1.22847 1.21058 1.20260 1.21619 0.95986 0.96638 0.98534 1.21853 1.00650 0.99927 0.97418 1.21708 0.99595 0.95996 1.01656 1.20386 0.92403 0.97454 1.03122 0.91620 0.91080 0.91830 0.91176 0.91422 0.90768 0.90402 0.81802 0.82026 0.85127 0.75180 0.89733 0.93110 0.81040 0.94675 0.93284 0.92144 0.91912 0.92373 0.93313 0.92999 0.93453 0.85524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 71.98 0.71 -0.41 16 2 C -0.12 -1.48 6.30 30.59 0.19 -1.29 16 3 C 0.05 0.68 4.74 71.98 0.34 1.03 16 4 O -0.33 -7.61 10.13 -92.48 -0.94 -8.55 16 5 C 0.12 2.95 6.68 22.47 0.15 3.10 16 6 C -0.17 -3.48 9.03 22.42 0.20 -3.28 16 7 C -0.08 -1.72 10.03 22.22 0.22 -1.50 16 8 C -0.13 -3.43 9.54 22.53 0.21 -3.21 16 9 C -0.11 -3.45 5.87 -20.10 -0.12 -3.57 16 10 C 0.55 20.18 7.77 86.79 0.67 20.86 16 11 O -0.58 -24.39 16.35 -3.86 -0.06 -24.46 16 12 N -0.70 -24.48 5.34 -465.96 -2.49 -26.96 16 13 C 0.12 4.11 4.73 86.38 0.41 4.52 16 14 C 0.18 6.47 2.18 44.99 0.10 6.57 16 15 H 0.06 2.07 8.08 -2.39 -0.02 2.05 16 16 N -0.74 -33.33 4.44 -322.95 -1.43 -34.76 16 17 C -0.30 -15.14 7.57 84.03 0.64 -14.51 16 18 H 0.07 3.48 7.40 -2.91 -0.02 3.46 16 19 C -0.10 -5.58 5.50 84.86 0.47 -5.11 16 20 N -0.98 -58.44 13.70 21.65 0.30 -58.15 16 21 Si 1.12 49.55 29.92 68.60 2.05 51.60 16 22 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 23 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 24 H -0.28 -11.26 7.11 99.48 0.71 -10.55 16 25 C -0.11 -3.52 2.69 -10.79 -0.03 -3.55 16 26 C -0.14 -3.64 8.84 71.98 0.64 -3.00 16 27 C -0.13 -4.61 8.26 71.98 0.59 -4.02 16 28 C -0.11 -3.48 9.53 22.63 0.22 -3.26 16 29 H 0.06 0.42 8.14 -2.38 -0.02 0.40 16 30 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.07 0.90 7.66 -2.39 -0.02 0.88 16 35 H 0.08 0.88 7.66 -2.39 -0.02 0.86 16 36 H 0.16 2.10 6.28 -2.91 -0.02 2.08 16 37 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16 38 H 0.13 3.60 6.40 -2.91 -0.02 3.58 16 39 H 0.41 14.19 6.17 -92.71 -0.57 13.62 16 40 H 0.08 2.67 6.71 -2.38 -0.02 2.65 16 41 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.36 17.69 6.63 -92.71 -0.61 17.08 16 43 H 0.24 14.58 6.77 -92.71 -0.63 13.95 16 44 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 47 H 0.06 1.44 6.54 -2.39 -0.02 1.42 16 48 H 0.05 2.07 6.01 -2.39 -0.01 2.06 16 49 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 50 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 51 H 0.13 4.14 7.65 -2.91 -0.02 4.11 16 Total: -1.00 -67.08 407.95 2.94 -64.15 By element: Atomic # 1 Polarization: 47.87 SS G_CDS: -0.11 Total: 47.76 kcal Atomic # 6 Polarization: -16.25 SS G_CDS: 5.62 Total: -10.63 kcal Atomic # 7 Polarization: -116.25 SS G_CDS: -3.62 Total: -119.87 kcal Atomic # 8 Polarization: -32.01 SS G_CDS: -1.00 Total: -33.01 kcal Atomic # 14 Polarization: 49.55 SS G_CDS: 2.05 Total: 51.60 kcal Total: -67.08 2.94 -64.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753831567.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.043 kcal (2) G-P(sol) polarization free energy of solvation -67.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds