Wall clock time and date at job start Tue Mar 31 2020 19:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 O 1.42904 * 109.47207 * 263.27205 * 3 2 1 5 5 C 1.42901 * 113.99857 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.46676 * 180.02562 * 5 4 3 7 7 C 1.50702 * 109.46770 * 180.02562 * 6 5 4 8 8 O 1.21276 * 120.00451 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99593 * 179.97438 * 7 6 5 10 10 C 1.47561 * 118.63956 * 353.70753 * 9 7 6 11 11 C 1.54303 * 111.98059 * 137.75218 * 10 9 7 12 12 C 1.50880 * 110.30885 * 319.64730 * 11 10 9 13 13 C 1.52618 * 109.37260 * 91.76181 * 12 11 10 14 14 C 1.47081 * 114.26327 * 275.25992 * 13 12 11 15 15 C 1.54259 * 112.34629 * 301.71933 * 14 13 12 16 16 C 1.54393 * 104.95043 * 237.62686 * 15 14 13 17 17 N 1.48152 * 104.61353 * 23.87424 * 16 15 14 18 18 C 1.36940 * 127.83016 * 140.43300 * 17 16 15 19 19 H 1.08006 * 120.00056 * 344.43201 * 18 17 16 20 20 C 1.38814 * 119.99816 * 164.43079 * 18 17 16 21 21 N 1.31622 * 119.99830 * 351.02273 * 20 18 17 22 22 Si 1.86797 * 119.99901 * 171.02371 * 20 18 17 23 23 H 1.48496 * 109.47515 * 59.99884 * 22 20 18 24 24 H 1.48503 * 109.47046 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.46879 * 299.99730 * 22 20 18 26 26 C 1.48147 * 104.33278 * 320.43360 * 17 16 15 27 27 C 1.44596 * 118.63160 * 173.97534 * 9 7 6 28 28 H 4.38452 * 5.44429 * 179.97438 * 4 1 2 29 29 H 1.09010 * 109.47245 * 143.27554 * 3 2 1 30 30 H 1.08999 * 109.47579 * 23.27834 * 3 2 1 31 31 H 1.08994 * 109.47520 * 299.99992 * 5 4 3 32 32 H 1.08994 * 109.47077 * 60.00514 * 5 4 3 33 33 H 1.09007 * 109.47021 * 299.99878 * 6 5 4 34 34 H 1.08994 * 109.47263 * 60.00242 * 6 5 4 35 35 H 1.08991 * 108.94090 * 258.56172 * 10 9 7 36 36 H 1.09004 * 108.93739 * 17.17033 * 10 9 7 37 37 H 1.08999 * 109.35711 * 199.34750 * 11 10 9 38 38 H 1.09004 * 109.21382 * 79.85767 * 11 10 9 39 39 H 1.08997 * 109.48391 * 331.79420 * 12 11 10 40 40 H 1.08996 * 109.48666 * 211.73443 * 12 11 10 41 41 H 1.09000 * 108.52227 * 154.02504 * 13 12 11 42 42 H 1.08995 * 108.40657 * 36.41245 * 13 12 11 43 43 H 1.08999 * 110.34076 * 356.49784 * 15 14 13 44 44 H 1.09000 * 110.34454 * 118.75389 * 15 14 13 45 45 H 1.08999 * 110.40690 * 142.66106 * 16 15 14 46 46 H 1.08998 * 110.40674 * 264.97160 * 16 15 14 47 47 H 0.96995 * 119.99550 * 179.97438 * 21 20 18 48 48 H 1.09004 * 110.40716 * 280.76005 * 26 17 16 49 49 H 1.08999 * 110.40728 * 158.33114 * 26 17 16 50 50 H 1.08997 * 109.46958 * 30.56922 * 27 9 7 51 51 H 1.09002 * 109.46417 * 150.56422 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1223 0.1587 1.3380 5 6 4.5468 0.1731 1.4500 6 6 4.9412 0.3458 2.9182 7 6 6.4435 0.3617 3.0362 8 8 7.1310 0.2467 2.0438 9 7 7.0230 0.5047 4.2446 10 6 6.1647 0.7839 5.4120 11 6 6.5902 -0.0328 6.6501 12 6 6.9673 -1.4370 6.2470 13 6 8.4656 -1.4971 5.9632 14 6 8.8388 -1.0958 4.5983 15 6 8.1494 -1.9613 3.5234 16 6 9.3054 -2.5707 2.7011 17 7 10.4679 -2.5514 3.6192 18 6 11.4323 -3.5113 3.7735 19 1 11.2716 -4.5058 3.3840 20 6 12.6164 -3.2062 4.4306 21 7 12.8899 -1.9586 4.7487 22 14 13.8216 -4.5662 4.8633 23 1 14.2660 -5.2477 3.6211 24 1 14.9988 -3.9827 5.5554 25 1 13.1583 -5.5494 5.7571 26 6 10.3506 -1.2582 4.3325 27 6 8.4606 0.3839 4.3422 28 1 -1.0500 0.0002 -0.0001 29 1 3.0090 0.8246 -0.6146 30 1 3.0098 -0.9432 -0.4061 31 1 4.9504 -0.7669 1.0739 32 1 4.9488 1.0008 0.8657 33 1 4.5376 1.2858 3.2947 34 1 4.5393 -0.4821 3.5021 35 1 6.2227 1.8464 5.6477 36 1 5.1337 0.5347 5.1607 37 1 5.7636 -0.0703 7.3596 38 1 7.4464 0.4500 7.1214 39 1 6.4157 -1.7182 5.3500 40 1 6.7224 -2.1256 7.0557 41 1 8.8090 -2.5180 6.1301 42 1 8.9761 -0.8415 6.6687 43 1 7.5608 -2.7499 3.9921 44 1 7.5168 -1.3424 2.8871 45 1 9.0671 -3.5939 2.4109 46 1 9.5055 -1.9630 1.8186 47 1 13.7171 -1.7455 5.2081 48 1 10.7160 -0.4443 3.7063 49 1 10.9004 -1.2917 5.2730 50 1 8.9175 0.7198 3.4114 51 1 8.8216 0.9988 5.1667 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754661279.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:42 Heat of formation + Delta-G solvation = 14.109282 kcal Electronic energy + Delta-G solvation = -30352.128487 eV Core-core repulsion = 26447.545582 eV Total energy + Delta-G solvation = -3904.582904 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.85940 -38.60226 -37.86339 -36.19584 -33.79667 -33.53532 -32.78531 -31.71494 -30.78233 -28.09168 -27.57125 -27.10616 -25.88561 -24.54806 -23.69641 -22.72473 -20.92866 -20.29638 -19.10668 -18.51563 -17.98309 -17.60342 -16.84589 -16.67866 -16.21502 -15.87817 -15.71407 -15.12461 -14.73476 -14.63081 -14.27332 -13.95562 -13.64566 -13.61736 -13.11397 -12.93243 -12.76299 -12.67795 -12.50865 -12.10743 -11.90941 -11.73151 -11.63824 -11.29599 -11.02489 -10.94658 -10.86629 -10.79018 -10.75806 -10.74532 -10.51465 -10.16733 -10.03531 -9.83806 -9.79237 -9.76410 -9.68885 -9.54624 -9.43647 -8.58492 -8.27637 -6.71589 -5.69879 -3.02241 2.14570 2.47138 2.65843 3.03771 3.43022 3.47290 3.48510 3.63174 4.19019 4.52470 4.54847 4.66279 4.82501 4.88372 4.93312 4.97791 5.08101 5.16307 5.23077 5.27024 5.31712 5.48388 5.53228 5.54160 5.59808 5.62535 5.64331 5.68782 5.81694 5.89234 5.95338 6.12518 6.17167 6.21271 6.26306 6.30163 6.46423 6.63818 6.76615 6.81493 6.82822 6.85023 6.96662 7.00322 7.22435 7.23023 7.43046 7.50113 7.65365 7.80901 8.25355 8.33386 9.22010 9.85035 10.65535 11.44253 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.016958 B = 0.002787 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.702812 B =10042.654845 C =10941.439221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.190 4.190 3 C 0.173 3.827 4 O -0.387 6.387 5 C 0.077 3.923 6 C -0.140 4.140 7 C 0.514 3.486 8 O -0.529 6.529 9 N -0.597 5.597 10 C 0.106 3.894 11 C -0.130 4.130 12 C -0.115 4.115 13 C -0.093 4.093 14 C -0.091 4.091 15 C -0.141 4.141 16 C 0.129 3.871 17 N -0.596 5.596 18 C -0.219 4.219 19 H 0.073 0.927 20 C -0.009 4.009 21 N -0.917 5.917 22 Si 0.909 3.091 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.286 1.286 26 C 0.173 3.827 27 C 0.125 3.875 28 H 0.221 0.779 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.064 0.936 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.057 0.943 41 H 0.063 0.937 42 H 0.053 0.947 43 H 0.045 0.955 44 H 0.082 0.918 45 H 0.037 0.963 46 H 0.021 0.979 47 H 0.252 0.748 48 H 0.020 0.980 49 H 0.084 0.916 50 H 0.085 0.915 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.024 7.866 -0.671 23.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.190 4.190 3 C 0.097 3.903 4 O -0.307 6.307 5 C 0.000 4.000 6 C -0.180 4.180 7 C 0.302 3.698 8 O -0.407 6.407 9 N -0.330 5.330 10 C -0.017 4.017 11 C -0.169 4.169 12 C -0.153 4.153 13 C -0.131 4.131 14 C -0.093 4.093 15 C -0.179 4.179 16 C 0.002 3.998 17 N -0.320 5.320 18 C -0.348 4.348 19 H 0.091 0.909 20 C -0.205 4.205 21 N -0.564 5.564 22 Si 0.740 3.260 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.213 1.213 26 C 0.047 3.953 27 C 0.002 3.998 28 H 0.238 0.762 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.082 0.918 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.072 0.928 43 H 0.064 0.936 44 H 0.100 0.900 45 H 0.056 0.944 46 H 0.039 0.961 47 H 0.063 0.937 48 H 0.038 0.962 49 H 0.103 0.897 50 H 0.104 0.896 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -21.481 7.787 -0.918 22.867 hybrid contribution 0.659 -0.711 0.186 0.987 sum -20.822 7.075 -0.732 22.004 Atomic orbital electron populations 1.24966 0.95886 1.01031 0.97765 1.22602 0.93936 1.00476 1.01965 1.19061 0.84522 1.01688 0.85001 1.87851 1.21946 1.94754 1.26163 1.22202 0.79480 1.02277 0.96005 1.21541 0.93435 1.05233 0.97825 1.20221 0.89750 0.76285 0.83504 1.90727 1.64971 1.48830 1.36157 1.47737 1.08009 1.70211 1.06995 1.22089 0.94104 0.99224 0.86273 1.21833 1.01909 0.96677 0.96441 1.21094 0.97723 0.95472 1.01011 1.20293 0.94072 1.02356 0.96353 1.21235 1.00365 0.93112 0.94621 1.23057 0.98600 0.98577 0.97682 1.21619 0.88227 0.97168 0.92745 1.44933 1.26737 1.18871 1.41429 1.18951 0.93552 0.89933 1.32321 0.90947 1.24855 0.96934 0.96238 1.02507 1.69890 1.25120 1.15902 1.45531 0.86242 0.80547 0.81047 0.78192 1.21143 1.21654 1.21258 1.21525 0.88071 0.87547 0.98186 1.21788 0.78148 0.97242 1.02621 0.76189 0.90623 0.90510 0.91748 0.91954 0.88305 0.88012 0.91809 0.90205 0.91091 0.91301 0.91784 0.92402 0.91800 0.92802 0.93597 0.89974 0.94445 0.96109 0.93746 0.96198 0.89739 0.89622 0.91230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.44 19.25 29.55 0.57 -0.87 16 2 C -0.19 -1.84 13.73 -37.12 -0.51 -2.35 16 3 C 0.17 1.55 6.41 34.37 0.22 1.77 16 4 O -0.39 -4.19 10.30 -35.23 -0.36 -4.55 16 5 C 0.08 0.81 5.23 37.16 0.19 1.00 16 6 C -0.14 -1.41 4.37 -27.88 -0.12 -1.53 16 7 C 0.51 6.94 5.91 -10.98 -0.06 6.87 16 8 O -0.53 -9.14 13.46 5.56 0.07 -9.07 16 9 N -0.60 -7.68 2.03 -172.34 -0.35 -8.03 16 10 C 0.11 0.98 6.01 -2.78 -0.02 0.96 16 11 C -0.13 -1.27 5.71 -27.11 -0.15 -1.43 16 12 C -0.12 -1.45 5.35 -27.99 -0.15 -1.60 16 13 C -0.09 -1.55 3.86 -29.77 -0.11 -1.66 16 14 C -0.09 -1.68 0.67 -155.00 -0.10 -1.78 16 15 C -0.14 -2.69 5.19 -25.34 -0.13 -2.82 16 16 C 0.13 2.95 7.23 -2.40 -0.02 2.94 16 17 N -0.60 -15.79 3.38 -168.87 -0.57 -16.36 16 18 C -0.22 -6.27 10.35 -15.06 -0.16 -6.42 16 19 H 0.07 2.02 7.84 -52.48 -0.41 1.61 16 20 C -0.01 -0.25 5.40 -17.43 -0.09 -0.35 16 21 N -0.92 -27.19 10.86 55.49 0.60 -26.59 16 22 Si 0.91 22.39 29.56 -169.99 -5.03 17.37 16 23 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 26 C 0.17 4.18 5.01 -2.43 -0.01 4.17 16 27 C 0.12 1.99 4.37 -4.08 -0.02 1.97 16 28 H 0.22 0.91 7.80 -54.09 -0.42 0.49 16 29 H 0.08 0.56 8.14 -51.92 -0.42 0.13 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.72 8.10 -51.93 -0.42 0.30 16 32 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 33 H 0.10 0.81 7.78 -51.92 -0.40 0.41 16 34 H 0.10 0.93 7.69 -51.93 -0.40 0.53 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.59 5.77 -51.93 -0.30 0.29 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.71 7.32 -51.93 -0.38 0.33 16 39 H 0.06 0.85 6.07 -51.93 -0.32 0.53 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.05 0.87 7.37 -51.93 -0.38 0.49 16 43 H 0.05 0.86 6.96 -51.93 -0.36 0.49 16 44 H 0.08 1.51 3.01 -51.93 -0.16 1.35 16 45 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 48 H 0.02 0.52 7.48 -51.93 -0.39 0.13 16 49 H 0.08 2.25 6.25 -51.93 -0.32 1.93 16 50 H 0.09 1.58 6.81 -51.93 -0.35 1.22 16 51 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16 LS Contribution 390.86 15.07 5.89 5.89 Total: -1.00 -33.59 390.86 -8.80 -42.39 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -8.38 Total: 0.08 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -0.68 Total: -1.13 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: -0.32 Total: -50.97 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: -0.29 Total: -13.62 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.03 Total: 17.37 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.59 -8.80 -42.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754661279.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.500 kcal (2) G-P(sol) polarization free energy of solvation -33.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds