Wall clock time and date at job start Tue Mar 31 2020 19:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 O 1.42904 * 109.47207 * 263.27205 * 3 2 1 5 5 C 1.42901 * 113.99857 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.46676 * 180.02562 * 5 4 3 7 7 C 1.50702 * 109.46770 * 180.02562 * 6 5 4 8 8 O 1.21276 * 120.00451 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99593 * 179.97438 * 7 6 5 10 10 C 1.47561 * 118.63956 * 353.70753 * 9 7 6 11 11 C 1.54303 * 111.98059 * 137.75218 * 10 9 7 12 12 C 1.50880 * 110.30885 * 319.64730 * 11 10 9 13 13 C 1.52618 * 109.37260 * 91.76181 * 12 11 10 14 14 C 1.47081 * 114.26327 * 275.25992 * 13 12 11 15 15 C 1.54259 * 112.34629 * 301.71933 * 14 13 12 16 16 C 1.54393 * 104.95043 * 237.62686 * 15 14 13 17 17 N 1.48152 * 104.61353 * 23.87424 * 16 15 14 18 18 C 1.36940 * 127.83016 * 140.43300 * 17 16 15 19 19 H 1.08006 * 120.00056 * 344.43201 * 18 17 16 20 20 C 1.38814 * 119.99816 * 164.43079 * 18 17 16 21 21 N 1.31622 * 119.99830 * 351.02273 * 20 18 17 22 22 Si 1.86797 * 119.99901 * 171.02371 * 20 18 17 23 23 H 1.48496 * 109.47515 * 59.99884 * 22 20 18 24 24 H 1.48503 * 109.47046 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.46879 * 299.99730 * 22 20 18 26 26 C 1.48147 * 104.33278 * 320.43360 * 17 16 15 27 27 C 1.44596 * 118.63160 * 173.97534 * 9 7 6 28 28 H 4.38452 * 5.44429 * 179.97438 * 4 1 2 29 29 H 1.09010 * 109.47245 * 143.27554 * 3 2 1 30 30 H 1.08999 * 109.47579 * 23.27834 * 3 2 1 31 31 H 1.08994 * 109.47520 * 299.99992 * 5 4 3 32 32 H 1.08994 * 109.47077 * 60.00514 * 5 4 3 33 33 H 1.09007 * 109.47021 * 299.99878 * 6 5 4 34 34 H 1.08994 * 109.47263 * 60.00242 * 6 5 4 35 35 H 1.08991 * 108.94090 * 258.56172 * 10 9 7 36 36 H 1.09004 * 108.93739 * 17.17033 * 10 9 7 37 37 H 1.08999 * 109.35711 * 199.34750 * 11 10 9 38 38 H 1.09004 * 109.21382 * 79.85767 * 11 10 9 39 39 H 1.08997 * 109.48391 * 331.79420 * 12 11 10 40 40 H 1.08996 * 109.48666 * 211.73443 * 12 11 10 41 41 H 1.09000 * 108.52227 * 154.02504 * 13 12 11 42 42 H 1.08995 * 108.40657 * 36.41245 * 13 12 11 43 43 H 1.08999 * 110.34076 * 356.49784 * 15 14 13 44 44 H 1.09000 * 110.34454 * 118.75389 * 15 14 13 45 45 H 1.08999 * 110.40690 * 142.66106 * 16 15 14 46 46 H 1.08998 * 110.40674 * 264.97160 * 16 15 14 47 47 H 0.96995 * 119.99550 * 179.97438 * 21 20 18 48 48 H 1.09004 * 110.40716 * 280.76005 * 26 17 16 49 49 H 1.08999 * 110.40728 * 158.33114 * 26 17 16 50 50 H 1.08997 * 109.46958 * 30.56922 * 27 9 7 51 51 H 1.09002 * 109.46417 * 150.56422 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1223 0.1587 1.3380 5 6 4.5468 0.1731 1.4500 6 6 4.9412 0.3458 2.9182 7 6 6.4435 0.3617 3.0362 8 8 7.1310 0.2467 2.0438 9 7 7.0230 0.5047 4.2446 10 6 6.1647 0.7839 5.4120 11 6 6.5902 -0.0328 6.6501 12 6 6.9673 -1.4370 6.2470 13 6 8.4656 -1.4971 5.9632 14 6 8.8388 -1.0958 4.5983 15 6 8.1494 -1.9613 3.5234 16 6 9.3054 -2.5707 2.7011 17 7 10.4679 -2.5514 3.6192 18 6 11.4323 -3.5113 3.7735 19 1 11.2716 -4.5058 3.3840 20 6 12.6164 -3.2062 4.4306 21 7 12.8899 -1.9586 4.7487 22 14 13.8216 -4.5662 4.8633 23 1 14.2660 -5.2477 3.6211 24 1 14.9988 -3.9827 5.5554 25 1 13.1583 -5.5494 5.7571 26 6 10.3506 -1.2582 4.3325 27 6 8.4606 0.3839 4.3422 28 1 -1.0500 0.0002 -0.0001 29 1 3.0090 0.8246 -0.6146 30 1 3.0098 -0.9432 -0.4061 31 1 4.9504 -0.7669 1.0739 32 1 4.9488 1.0008 0.8657 33 1 4.5376 1.2858 3.2947 34 1 4.5393 -0.4821 3.5021 35 1 6.2227 1.8464 5.6477 36 1 5.1337 0.5347 5.1607 37 1 5.7636 -0.0703 7.3596 38 1 7.4464 0.4500 7.1214 39 1 6.4157 -1.7182 5.3500 40 1 6.7224 -2.1256 7.0557 41 1 8.8090 -2.5180 6.1301 42 1 8.9761 -0.8415 6.6687 43 1 7.5608 -2.7499 3.9921 44 1 7.5168 -1.3424 2.8871 45 1 9.0671 -3.5939 2.4109 46 1 9.5055 -1.9630 1.8186 47 1 13.7171 -1.7455 5.2081 48 1 10.7160 -0.4443 3.7063 49 1 10.9004 -1.2917 5.2730 50 1 8.9175 0.7198 3.4114 51 1 8.8216 0.9988 5.1667 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754661279.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:41 Heat of formation + Delta-G solvation = -6.024938 kcal Electronic energy + Delta-G solvation = -30353.001572 eV Core-core repulsion = 26447.545582 eV Total energy + Delta-G solvation = -3905.455989 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.05942 -39.73968 -38.90280 -37.55530 -35.04054 -34.43308 -34.25536 -32.95312 -32.15576 -29.98021 -28.63854 -28.19685 -27.12051 -26.15367 -24.91182 -23.95106 -22.33795 -21.88306 -20.05908 -19.45701 -19.19101 -18.84809 -18.48002 -17.68568 -17.12130 -17.05232 -16.75600 -16.58436 -16.11921 -15.79656 -15.58876 -15.11390 -14.97848 -14.78448 -14.55448 -14.23773 -14.07751 -13.99816 -13.60628 -13.36286 -13.25785 -12.94596 -12.80691 -12.70815 -12.65568 -12.42675 -12.34131 -12.09118 -12.01294 -11.83152 -11.78848 -11.53257 -11.44381 -11.40601 -11.18858 -11.16797 -11.14760 -10.73588 -10.71896 -10.55199 -9.46758 -8.87068 -7.90008 -5.26276 1.43062 1.45877 1.46955 1.53352 1.62191 1.84216 2.07987 2.47833 2.91220 3.28256 3.52746 3.66824 3.67848 3.72500 3.92867 4.06186 4.06582 4.09017 4.15623 4.22812 4.32524 4.38752 4.45304 4.45672 4.48904 4.52924 4.57746 4.69322 4.76997 4.80132 4.82314 4.86969 4.91751 5.02754 5.04900 5.09448 5.14345 5.22792 5.26133 5.33819 5.40177 5.41542 5.45257 5.52044 5.70143 5.75365 5.79610 6.07586 6.20859 6.43678 6.61532 7.02590 7.21154 7.69103 8.50599 9.22922 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.016958 B = 0.002787 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.702812 B =10042.654845 C =10941.439221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.238 4.238 3 C 0.166 3.834 4 O -0.396 6.396 5 C 0.079 3.921 6 C -0.130 4.130 7 C 0.509 3.491 8 O -0.575 6.575 9 N -0.595 5.595 10 C 0.099 3.901 11 C -0.127 4.127 12 C -0.106 4.106 13 C -0.089 4.089 14 C -0.077 4.077 15 C -0.125 4.125 16 C 0.124 3.876 17 N -0.619 5.619 18 C -0.241 4.241 19 H 0.074 0.926 20 C -0.062 4.062 21 N -0.946 5.946 22 Si 0.980 3.020 23 H -0.278 1.278 24 H -0.291 1.291 25 H -0.276 1.276 26 C 0.180 3.820 27 C 0.138 3.862 28 H 0.254 0.746 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.127 0.873 34 H 0.120 0.880 35 H 0.087 0.913 36 H 0.109 0.891 37 H 0.106 0.894 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.070 0.930 41 H 0.027 0.973 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.096 0.904 45 H 0.040 0.960 46 H 0.003 0.997 47 H 0.250 0.750 48 H -0.012 1.012 49 H 0.054 0.946 50 H 0.054 0.946 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.366 8.171 0.820 26.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.238 4.238 3 C 0.091 3.909 4 O -0.316 6.316 5 C 0.002 3.998 6 C -0.169 4.169 7 C 0.300 3.700 8 O -0.457 6.457 9 N -0.326 5.326 10 C -0.021 4.021 11 C -0.164 4.164 12 C -0.144 4.144 13 C -0.126 4.126 14 C -0.080 4.080 15 C -0.164 4.164 16 C -0.002 4.002 17 N -0.343 5.343 18 C -0.370 4.370 19 H 0.091 0.909 20 C -0.256 4.256 21 N -0.593 5.593 22 Si 0.807 3.193 23 H -0.204 1.204 24 H -0.216 1.216 25 H -0.202 1.202 26 C 0.054 3.946 27 C 0.013 3.987 28 H 0.270 0.730 29 H 0.104 0.896 30 H 0.101 0.899 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.145 0.855 34 H 0.138 0.862 35 H 0.105 0.895 36 H 0.128 0.872 37 H 0.124 0.876 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.046 0.954 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.114 0.886 45 H 0.059 0.941 46 H 0.021 0.979 47 H 0.059 0.941 48 H 0.006 0.994 49 H 0.072 0.928 50 H 0.073 0.927 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -24.876 8.098 0.587 26.168 hybrid contribution 1.682 -0.799 -0.354 1.895 sum -23.194 7.299 0.233 24.317 Atomic orbital electron populations 1.25857 0.96777 0.99255 0.95841 1.23044 0.94776 1.02225 1.03790 1.19209 0.84710 1.02529 0.84433 1.87811 1.21682 1.94819 1.27306 1.22117 0.79562 1.01540 0.96530 1.21505 0.90245 1.07395 0.97749 1.20902 0.91218 0.75031 0.82866 1.90717 1.66316 1.50845 1.37783 1.47790 1.06745 1.69667 1.08421 1.22449 0.94557 1.00637 0.84496 1.21823 1.03090 0.94292 0.97236 1.21020 0.93769 0.98163 1.01453 1.20267 0.97641 0.99979 0.94758 1.21033 0.95909 0.95219 0.95807 1.22952 0.97171 0.98843 0.97395 1.21736 0.88671 0.97369 0.92421 1.45259 1.27271 1.19159 1.42628 1.19311 0.94514 0.90600 1.32542 0.90866 1.25725 0.98691 0.98654 1.02535 1.70097 1.25372 1.17812 1.46068 0.85145 0.77921 0.78187 0.78014 1.20389 1.21649 1.20207 1.21373 0.91807 0.85797 0.95670 1.21353 0.80628 0.95102 1.01586 0.72953 0.89563 0.89909 0.92984 0.92383 0.85504 0.86163 0.89505 0.87246 0.87613 0.91805 0.91978 0.91139 0.95371 0.92677 0.92655 0.88635 0.94143 0.97937 0.94142 0.99412 0.92752 0.92728 0.89711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 19.25 74.32 1.43 -0.78 16 2 C -0.24 -4.32 13.73 31.12 0.43 -3.89 16 3 C 0.17 2.85 6.41 70.18 0.45 3.29 16 4 O -0.40 -7.91 10.30 -148.98 -1.53 -9.45 16 5 C 0.08 1.56 5.23 71.98 0.38 1.94 16 6 C -0.13 -2.19 4.37 29.85 0.13 -2.06 16 7 C 0.51 12.94 5.91 87.66 0.52 13.46 16 8 O -0.58 -20.09 13.46 -3.02 -0.04 -20.13 16 9 N -0.60 -14.04 2.03 -817.56 -1.66 -15.70 16 10 C 0.10 1.39 6.01 86.62 0.52 1.91 16 11 C -0.13 -1.91 5.71 30.35 0.17 -1.74 16 12 C -0.11 -2.38 5.35 29.78 0.16 -2.22 16 13 C -0.09 -2.93 3.86 28.63 0.11 -2.82 16 14 C -0.08 -2.92 0.67 -52.50 -0.04 -2.96 16 15 C -0.13 -4.87 5.19 31.49 0.16 -4.71 16 16 C 0.12 5.94 7.23 86.53 0.63 6.57 16 17 N -0.62 -34.52 3.38 -688.19 -2.33 -36.84 16 18 C -0.24 -14.32 10.35 84.03 0.87 -13.45 16 19 H 0.07 4.21 7.84 -2.91 -0.02 4.19 16 20 C -0.06 -3.68 5.40 84.86 0.46 -3.22 16 21 N -0.95 -58.45 10.86 21.65 0.24 -58.21 16 22 Si 0.98 47.08 29.56 68.60 2.03 49.11 16 23 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 24 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 25 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 26 C 0.18 9.23 5.01 86.52 0.43 9.66 16 27 C 0.14 4.41 4.37 87.37 0.38 4.79 16 28 H 0.25 1.23 7.80 -4.42 -0.03 1.20 16 29 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 30 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.05 1.14 8.10 -2.39 -0.02 1.12 16 32 H 0.06 1.18 8.10 -2.39 -0.02 1.16 16 33 H 0.13 1.50 7.78 -2.38 -0.02 1.48 16 34 H 0.12 1.67 7.69 -2.39 -0.02 1.65 16 35 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.11 0.96 5.77 -2.39 -0.01 0.95 16 37 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.06 1.08 7.32 -2.38 -0.02 1.06 16 39 H 0.06 1.44 6.07 -2.39 -0.01 1.42 16 40 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.05 1.78 7.37 -2.39 -0.02 1.76 16 43 H 0.05 2.03 6.96 -2.39 -0.02 2.02 16 44 H 0.10 3.53 3.01 -2.39 -0.01 3.52 16 45 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 46 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 47 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 48 H -0.01 -0.68 7.48 -2.39 -0.02 -0.70 16 49 H 0.05 3.09 6.25 -2.39 -0.01 3.07 16 50 H 0.05 2.11 6.81 -2.39 -0.02 2.09 16 51 H 0.08 2.44 8.08 -2.39 -0.02 2.42 16 Total: -1.00 -78.40 390.86 4.80 -73.60 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: 0.91 Total: 13.86 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: 7.19 Total: 3.77 kcal Atomic # 7 Polarization: -107.00 SS G_CDS: -3.75 Total: -110.75 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: -1.58 Total: -29.58 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 2.03 Total: 49.11 kcal Total: -78.40 4.80 -73.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754661279.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.575 kcal (2) G-P(sol) polarization free energy of solvation -78.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds