Wall clock time and date at job start Tue Mar 31 2020 18:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09011 * 109.51734 * 2 1 4 4 C 1.53032 * 109.49924 * 120.07988 * 2 1 3 5 5 C 1.53036 * 109.53845 * 58.59228 * 4 2 1 6 6 H 1.09007 * 109.52334 * 301.39102 * 5 4 2 7 7 C 1.52998 * 109.50150 * 181.31590 * 5 4 2 8 8 C 1.53188 * 109.31558 * 61.36165 * 5 4 2 9 9 N 1.46927 * 108.77486 * 305.36608 * 8 5 4 10 10 C 1.34778 * 120.63388 * 233.58107 * 9 8 5 11 11 O 1.21280 * 119.99705 * 0.02562 * 10 9 8 12 12 C 1.50698 * 120.00126 * 179.97438 * 10 9 8 13 13 N 1.46902 * 109.46958 * 174.90940 * 12 10 9 14 14 C 1.46898 * 110.99999 * 283.62838 * 13 12 10 15 15 C 1.50699 * 109.46807 * 169.99923 * 14 13 12 16 16 H 1.08003 * 120.00379 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00031 * 180.02562 * 15 14 13 18 18 N 1.31517 * 119.99965 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 120.00074 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47117 * 179.97438 * 19 17 15 21 21 H 1.48504 * 109.46951 * 299.99465 * 19 17 15 22 22 H 1.48495 * 109.47210 * 59.99833 * 19 17 15 23 23 C 1.46897 * 110.99676 * 159.67679 * 13 12 10 24 24 C 1.50701 * 109.47167 * 287.91402 * 23 13 12 25 25 C 1.34513 * 125.78729 * 95.48290 * 24 23 13 26 26 C 1.41381 * 106.84032 * 179.89003 * 25 24 23 27 27 C 1.34512 * 106.84349 * 0.37494 * 26 25 24 28 28 O 1.34302 * 125.79236 * 275.79206 * 24 23 13 29 29 C 1.46929 * 118.73780 * 53.85854 * 9 8 5 30 30 H 1.09001 * 109.46941 * 299.91694 * 1 2 3 31 31 H 1.08990 * 109.47052 * 59.91952 * 1 2 3 32 32 H 1.08998 * 109.46677 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46591 * 298.56819 * 4 2 1 34 34 H 1.09001 * 109.45148 * 178.60367 * 4 2 1 35 35 H 1.09001 * 109.46971 * 300.16275 * 7 5 4 36 36 H 1.09007 * 109.47064 * 60.15854 * 7 5 4 37 37 H 1.08998 * 109.47455 * 180.15767 * 7 5 4 38 38 H 1.08999 * 109.59188 * 185.58125 * 8 5 4 39 39 H 1.09004 * 109.70349 * 65.22059 * 8 5 4 40 40 H 1.09005 * 109.46976 * 54.91263 * 12 10 9 41 41 H 1.08997 * 109.47506 * 294.91308 * 12 10 9 42 42 H 1.08998 * 109.47302 * 50.00353 * 14 13 12 43 43 H 1.08996 * 109.47539 * 290.00297 * 14 13 12 44 44 H 0.97001 * 119.99676 * 0.02562 * 18 17 15 45 45 H 1.09001 * 109.47185 * 47.91492 * 23 13 12 46 46 H 1.09002 * 109.47031 * 167.92228 * 23 13 12 47 47 H 1.08004 * 126.58254 * 0.02664 * 25 24 23 48 48 H 1.08007 * 126.57729 * 180.11990 * 26 25 24 49 49 H 1.08000 * 125.79389 * 179.79503 * 27 26 25 50 50 H 1.09005 * 109.58667 * 65.92486 * 29 9 8 51 51 H 1.08997 * 109.58663 * 186.35099 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0275 0.0000 4 6 2.0409 -0.7230 1.2483 5 6 1.5033 -2.1557 1.2659 6 1 0.4134 -2.1360 1.2544 7 6 1.9876 -2.8675 2.5307 8 6 2.0142 -2.9039 0.0307 9 7 1.6517 -2.1381 -1.1696 10 6 0.9750 -2.7220 -2.1784 11 8 0.6591 -3.8903 -2.1003 12 6 0.6099 -1.9228 -3.4028 13 7 -0.0093 -2.8079 -4.3985 14 6 1.0037 -3.6276 -5.0765 15 6 0.3214 -4.6861 -5.9043 16 1 -0.7568 -4.7438 -5.9250 17 6 1.0738 -5.5809 -6.6353 18 7 2.3868 -5.5103 -6.6105 19 14 0.2281 -6.8925 -7.6619 20 1 1.2521 -7.7213 -8.3473 21 1 -0.5982 -7.7553 -6.7797 22 1 -0.6419 -6.2434 -8.6753 23 6 -0.7989 -2.0377 -5.3687 24 6 -2.0525 -1.5287 -4.7050 25 6 -2.2127 -0.3119 -4.1545 26 6 -3.5338 -0.2595 -3.6538 27 6 -4.0993 -1.4504 -3.9208 28 8 -3.1974 -2.2152 -4.5577 29 6 2.0462 -0.7251 -1.2520 30 1 -0.3633 0.5126 0.8907 31 1 -0.3633 0.5150 -0.8892 32 1 -0.3632 -1.0277 -0.0005 33 1 1.6989 -0.1958 2.1389 34 1 3.1306 -0.7443 1.2350 35 1 3.0774 -2.8859 2.5424 36 1 1.6237 -2.3348 3.4093 37 1 1.6068 -3.8887 2.5414 38 1 1.5557 -3.8918 -0.0139 39 1 3.0981 -3.0062 0.0853 40 1 1.5090 -1.4738 -3.8250 41 1 -0.0937 -1.1372 -3.1275 42 1 1.6429 -4.1038 -4.3331 43 1 1.6096 -2.9942 -5.7243 44 1 2.8259 -4.8290 -6.0777 45 1 -0.2099 -1.1939 -5.7283 46 1 -1.0671 -2.6781 -6.2089 47 1 -1.4745 0.4750 -4.1064 48 1 -3.9984 0.5750 -3.1496 49 1 -5.1076 -1.7421 -3.6666 50 1 3.1328 -0.6513 -1.2985 51 1 1.6088 -0.2750 -2.1432 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078665895.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:44 Heat of formation + Delta-G solvation = -19.944764 kcal Electronic energy + Delta-G solvation = -30606.939918 eV Core-core repulsion = 26700.880320 eV Total energy + Delta-G solvation = -3906.059598 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.22387 -40.26837 -38.03288 -36.32639 -33.86249 -33.04579 -32.94167 -32.51637 -30.29976 -28.50603 -27.10183 -26.70701 -26.15253 -25.22500 -23.54114 -21.79163 -21.44769 -21.42097 -20.12724 -19.67259 -18.35750 -17.15172 -16.88445 -16.84289 -15.82299 -15.68350 -15.38048 -15.04336 -14.79043 -14.41880 -14.24689 -14.00921 -13.81067 -13.61897 -13.31164 -13.18413 -13.01105 -12.67641 -12.53492 -12.46127 -12.25263 -12.16337 -12.01999 -11.84544 -11.67311 -11.42243 -11.34840 -11.22224 -10.94724 -10.89145 -10.71027 -10.63865 -10.42252 -10.30845 -10.01416 -9.65385 -9.25880 -8.64476 -8.40841 -8.32657 -8.17306 -7.44846 -6.30717 -3.98365 2.04835 2.83414 3.11356 3.15234 3.37020 3.49630 3.54319 3.71439 4.42042 4.55862 4.57010 4.64263 4.73364 4.80909 4.97360 5.02167 5.10844 5.22203 5.24647 5.32606 5.36405 5.37795 5.44981 5.45459 5.46400 5.52000 5.54768 5.58923 5.62951 5.75592 5.76209 5.79243 5.87557 5.91658 5.97273 6.02414 6.07534 6.09376 6.12505 6.18913 6.30252 6.45187 6.66840 6.76229 6.93179 7.00072 7.48310 7.57492 7.78515 7.88570 8.29355 8.62480 8.69537 8.92398 9.70957 11.08490 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.009428 B = 0.004284 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2969.081363 B = 6534.581237 C = 8611.513170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.107 4.107 3 H 0.079 0.921 4 C -0.108 4.108 5 C -0.109 4.109 6 H 0.077 0.923 7 C -0.145 4.145 8 C 0.119 3.881 9 N -0.621 5.621 10 C 0.517 3.483 11 O -0.500 6.500 12 C 0.033 3.967 13 N -0.506 5.506 14 C 0.188 3.812 15 C -0.584 4.584 16 H 0.058 0.942 17 C 0.016 3.984 18 N -0.914 5.914 19 Si 1.071 2.929 20 H -0.284 1.284 21 H -0.287 1.287 22 H -0.288 1.288 23 C 0.131 3.869 24 C 0.029 3.971 25 C -0.232 4.232 26 C -0.216 4.216 27 C -0.052 4.052 28 O -0.161 6.161 29 C 0.113 3.887 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.091 0.909 39 H 0.061 0.939 40 H 0.053 0.947 41 H 0.093 0.907 42 H 0.032 0.968 43 H -0.020 1.020 44 H 0.265 0.735 45 H 0.057 0.943 46 H 0.111 0.889 47 H 0.140 0.860 48 H 0.141 0.859 49 H 0.196 0.804 50 H 0.066 0.934 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.504 15.708 14.524 21.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.126 4.126 3 H 0.097 0.903 4 C -0.145 4.145 5 C -0.128 4.128 6 H 0.096 0.904 7 C -0.202 4.202 8 C -0.004 4.004 9 N -0.358 5.358 10 C 0.304 3.696 11 O -0.372 6.372 12 C -0.098 4.098 13 N -0.231 5.231 14 C 0.064 3.936 15 C -0.622 4.622 16 H 0.077 0.923 17 C -0.188 4.188 18 N -0.551 5.551 19 Si 0.900 3.100 20 H -0.209 1.209 21 H -0.213 1.213 22 H -0.215 1.215 23 C 0.003 3.997 24 C -0.023 4.023 25 C -0.252 4.252 26 C -0.235 4.235 27 C -0.120 4.120 28 O -0.056 6.056 29 C -0.011 4.011 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.109 0.891 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.111 0.889 42 H 0.049 0.951 43 H -0.003 1.003 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.129 0.871 47 H 0.158 0.842 48 H 0.159 0.841 49 H 0.213 0.787 50 H 0.084 0.916 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.760 13.115 13.634 19.288 hybrid contribution 0.243 2.295 0.974 2.505 sum -3.518 15.410 14.608 21.523 Atomic orbital electron populations 1.21844 0.94670 1.02519 1.01403 1.21573 0.96705 0.99159 0.95144 0.90272 1.21595 1.00399 0.95193 0.97325 1.21550 1.01322 0.95120 0.94805 0.90449 1.21761 1.01243 1.00563 0.96672 1.21540 0.99452 0.96301 0.83119 1.48090 1.58061 1.11129 1.18545 1.20689 0.77083 0.88035 0.83817 1.90742 1.51316 1.16165 1.78961 1.22028 0.99086 0.95605 0.93119 1.61628 1.26450 1.20311 1.14704 1.19894 0.89382 0.91665 0.92707 1.21918 0.95022 1.16107 1.29171 0.92347 1.25808 0.95719 0.99617 0.97611 1.70801 1.08771 1.35287 1.40237 0.83508 0.74908 0.75771 0.75855 1.20904 1.21341 1.21462 1.20530 0.86906 0.97395 0.94853 1.22760 0.87536 0.90675 1.01296 1.21488 0.98166 0.98496 1.07070 1.21678 0.95617 0.99044 1.07171 1.23952 0.95518 0.91212 1.01314 1.84116 1.20466 1.41355 1.59629 1.21812 0.99585 0.81281 0.98391 0.92860 0.92709 0.92004 0.91858 0.91842 0.92586 0.92558 0.92353 0.89087 0.92063 0.92960 0.88858 0.95053 1.00256 0.92501 0.92508 0.87076 0.84181 0.84091 0.78731 0.91584 0.89894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 8.71 37.16 0.32 -1.10 16 2 C -0.11 -0.93 3.21 -90.28 -0.29 -1.22 16 3 H 0.08 0.56 8.14 -51.92 -0.42 0.14 16 4 C -0.11 -0.91 4.71 -26.70 -0.13 -1.04 16 5 C -0.11 -1.11 2.53 -90.51 -0.23 -1.34 16 6 H 0.08 0.89 6.34 -51.93 -0.33 0.56 16 7 C -0.14 -1.24 9.20 37.16 0.34 -0.90 16 8 C 0.12 1.57 5.71 -3.71 -0.02 1.55 16 9 N -0.62 -9.01 2.40 -172.50 -0.41 -9.42 16 10 C 0.52 9.91 7.27 -10.99 -0.08 9.83 16 11 O -0.50 -12.18 14.95 5.56 0.08 -12.10 16 12 C 0.03 0.60 3.68 -4.98 -0.02 0.58 16 13 N -0.51 -11.28 3.96 -238.97 -0.95 -12.23 16 14 C 0.19 4.98 3.68 -4.98 -0.02 4.96 16 15 C -0.58 -17.03 8.28 -34.44 -0.29 -17.31 16 16 H 0.06 1.73 7.26 -52.48 -0.38 1.35 16 17 C 0.02 0.47 5.46 -17.82 -0.10 0.37 16 18 N -0.91 -28.41 13.65 55.43 0.76 -27.66 16 19 Si 1.07 26.19 29.90 -169.99 -5.08 21.11 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 23 C 0.13 2.55 5.34 -4.98 -0.03 2.52 16 24 C 0.03 0.52 6.32 -35.62 -0.23 0.29 16 25 C -0.23 -3.42 9.51 -39.70 -0.38 -3.80 16 26 C -0.22 -2.88 10.91 -39.70 -0.43 -3.31 16 27 C -0.05 -0.73 12.09 29.42 0.36 -0.37 16 28 O -0.16 -2.97 10.65 5.70 0.06 -2.91 16 29 C 0.11 1.21 5.74 -3.49 -0.02 1.19 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.75 5.97 -51.93 -0.31 0.44 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.09 1.44 7.00 -51.93 -0.36 1.08 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.05 0.87 7.52 -51.93 -0.39 0.48 16 41 H 0.09 1.47 5.89 -51.93 -0.31 1.16 16 42 H 0.03 0.92 6.80 -51.93 -0.35 0.57 16 43 H -0.02 -0.54 7.99 -51.93 -0.41 -0.95 16 44 H 0.26 8.22 7.22 -40.82 -0.29 7.93 16 45 H 0.06 0.97 8.05 -51.93 -0.42 0.55 16 46 H 0.11 2.40 6.59 -51.93 -0.34 2.06 16 47 H 0.14 1.74 8.05 -52.48 -0.42 1.31 16 48 H 0.14 1.47 8.06 -52.48 -0.42 1.05 16 49 H 0.20 1.96 8.06 -52.49 -0.42 1.53 16 50 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 51 H 0.08 0.85 5.95 -51.93 -0.31 0.54 16 LS Contribution 397.34 15.07 5.99 5.99 Total: -1.00 -35.49 397.34 -9.28 -44.78 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -8.50 Total: 1.55 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: -1.23 Total: -9.11 kcal Atomic # 7 Polarization: -48.70 SS G_CDS: -0.60 Total: -49.31 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: 0.14 Total: -15.01 kcal Atomic # 14 Polarization: 26.19 SS G_CDS: -5.08 Total: 21.11 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.49 -9.28 -44.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078665895.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.835 kcal (2) G-P(sol) polarization free energy of solvation -35.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds