Wall clock time and date at job start Tue Mar 31 2020 18:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09011 * 109.51734 * 2 1 4 4 C 1.53032 * 109.49924 * 120.07988 * 2 1 3 5 5 C 1.53036 * 109.53845 * 58.59228 * 4 2 1 6 6 H 1.09007 * 109.52334 * 301.39102 * 5 4 2 7 7 C 1.52998 * 109.50150 * 181.31590 * 5 4 2 8 8 C 1.53188 * 109.31558 * 61.36165 * 5 4 2 9 9 N 1.46927 * 108.77486 * 305.36608 * 8 5 4 10 10 C 1.34778 * 120.63388 * 233.58107 * 9 8 5 11 11 O 1.21280 * 119.99705 * 0.02562 * 10 9 8 12 12 C 1.50698 * 120.00126 * 179.97438 * 10 9 8 13 13 N 1.46902 * 109.46958 * 174.90940 * 12 10 9 14 14 C 1.46898 * 110.99999 * 283.62838 * 13 12 10 15 15 C 1.50699 * 109.46807 * 169.99923 * 14 13 12 16 16 H 1.08003 * 120.00379 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00031 * 180.02562 * 15 14 13 18 18 N 1.31517 * 119.99965 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 120.00074 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47117 * 179.97438 * 19 17 15 21 21 H 1.48504 * 109.46951 * 299.99465 * 19 17 15 22 22 H 1.48495 * 109.47210 * 59.99833 * 19 17 15 23 23 C 1.46897 * 110.99676 * 159.67679 * 13 12 10 24 24 C 1.50701 * 109.47167 * 287.91402 * 23 13 12 25 25 C 1.34513 * 125.78729 * 95.48290 * 24 23 13 26 26 C 1.41381 * 106.84032 * 179.89003 * 25 24 23 27 27 C 1.34512 * 106.84349 * 0.37494 * 26 25 24 28 28 O 1.34302 * 125.79236 * 275.79206 * 24 23 13 29 29 C 1.46929 * 118.73780 * 53.85854 * 9 8 5 30 30 H 1.09001 * 109.46941 * 299.91694 * 1 2 3 31 31 H 1.08990 * 109.47052 * 59.91952 * 1 2 3 32 32 H 1.08998 * 109.46677 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46591 * 298.56819 * 4 2 1 34 34 H 1.09001 * 109.45148 * 178.60367 * 4 2 1 35 35 H 1.09001 * 109.46971 * 300.16275 * 7 5 4 36 36 H 1.09007 * 109.47064 * 60.15854 * 7 5 4 37 37 H 1.08998 * 109.47455 * 180.15767 * 7 5 4 38 38 H 1.08999 * 109.59188 * 185.58125 * 8 5 4 39 39 H 1.09004 * 109.70349 * 65.22059 * 8 5 4 40 40 H 1.09005 * 109.46976 * 54.91263 * 12 10 9 41 41 H 1.08997 * 109.47506 * 294.91308 * 12 10 9 42 42 H 1.08998 * 109.47302 * 50.00353 * 14 13 12 43 43 H 1.08996 * 109.47539 * 290.00297 * 14 13 12 44 44 H 0.97001 * 119.99676 * 0.02562 * 18 17 15 45 45 H 1.09001 * 109.47185 * 47.91492 * 23 13 12 46 46 H 1.09002 * 109.47031 * 167.92228 * 23 13 12 47 47 H 1.08004 * 126.58254 * 0.02664 * 25 24 23 48 48 H 1.08007 * 126.57729 * 180.11990 * 26 25 24 49 49 H 1.08000 * 125.79389 * 179.79503 * 27 26 25 50 50 H 1.09005 * 109.58667 * 65.92486 * 29 9 8 51 51 H 1.08997 * 109.58663 * 186.35099 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0275 0.0000 4 6 2.0409 -0.7230 1.2483 5 6 1.5033 -2.1557 1.2659 6 1 0.4134 -2.1360 1.2544 7 6 1.9876 -2.8675 2.5307 8 6 2.0142 -2.9039 0.0307 9 7 1.6517 -2.1381 -1.1696 10 6 0.9750 -2.7220 -2.1784 11 8 0.6591 -3.8903 -2.1003 12 6 0.6099 -1.9228 -3.4028 13 7 -0.0093 -2.8079 -4.3985 14 6 1.0037 -3.6276 -5.0765 15 6 0.3214 -4.6861 -5.9043 16 1 -0.7568 -4.7438 -5.9250 17 6 1.0738 -5.5809 -6.6353 18 7 2.3868 -5.5103 -6.6105 19 14 0.2281 -6.8925 -7.6619 20 1 1.2521 -7.7213 -8.3473 21 1 -0.5982 -7.7553 -6.7797 22 1 -0.6419 -6.2434 -8.6753 23 6 -0.7989 -2.0377 -5.3687 24 6 -2.0525 -1.5287 -4.7050 25 6 -2.2127 -0.3119 -4.1545 26 6 -3.5338 -0.2595 -3.6538 27 6 -4.0993 -1.4504 -3.9208 28 8 -3.1974 -2.2152 -4.5577 29 6 2.0462 -0.7251 -1.2520 30 1 -0.3633 0.5126 0.8907 31 1 -0.3633 0.5150 -0.8892 32 1 -0.3632 -1.0277 -0.0005 33 1 1.6989 -0.1958 2.1389 34 1 3.1306 -0.7443 1.2350 35 1 3.0774 -2.8859 2.5424 36 1 1.6237 -2.3348 3.4093 37 1 1.6068 -3.8887 2.5414 38 1 1.5557 -3.8918 -0.0139 39 1 3.0981 -3.0062 0.0853 40 1 1.5090 -1.4738 -3.8250 41 1 -0.0937 -1.1372 -3.1275 42 1 1.6429 -4.1038 -4.3331 43 1 1.6096 -2.9942 -5.7243 44 1 2.8259 -4.8290 -6.0777 45 1 -0.2099 -1.1939 -5.7283 46 1 -1.0671 -2.6781 -6.2089 47 1 -1.4745 0.4750 -4.1064 48 1 -3.9984 0.5750 -3.1496 49 1 -5.1076 -1.7421 -3.6666 50 1 3.1328 -0.6513 -1.2985 51 1 1.6088 -0.2750 -2.1432 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078665895.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:42 Heat of formation + Delta-G solvation = -42.822176 kcal Electronic energy + Delta-G solvation = -30607.931957 eV Core-core repulsion = 26700.880320 eV Total energy + Delta-G solvation = -3907.051637 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.43751 -41.47861 -39.32751 -37.97503 -35.12453 -34.81416 -33.99982 -33.82876 -31.65364 -30.10654 -28.11869 -27.86203 -27.38217 -26.43414 -25.38224 -23.25485 -22.60773 -22.59227 -21.35796 -20.83981 -19.41208 -19.04431 -18.45857 -18.07064 -17.16768 -17.06922 -16.57459 -16.30278 -15.98456 -15.69696 -15.52871 -15.39649 -15.12132 -14.99079 -14.70725 -14.33087 -14.27214 -14.03740 -13.73939 -13.68216 -13.47769 -13.38978 -13.17321 -13.04769 -12.92286 -12.85266 -12.64505 -12.50448 -12.46430 -12.18517 -11.98484 -11.93749 -11.78634 -11.47796 -11.11070 -10.92543 -10.77010 -10.70827 -10.59148 -9.59891 -9.41387 -9.17173 -8.69369 -6.37977 0.82287 1.49460 1.59067 1.63822 1.72350 1.78691 1.94863 2.20781 2.53614 3.11599 3.17453 3.51703 3.71902 3.83281 3.84790 3.90811 3.97889 4.07450 4.13556 4.18345 4.19832 4.23590 4.33046 4.41284 4.44956 4.54795 4.58134 4.63758 4.73102 4.78740 4.79766 4.85333 4.87915 4.90238 4.97032 5.04168 5.05135 5.07790 5.16123 5.24224 5.25561 5.30142 5.34514 5.51438 5.60535 5.68102 5.71783 5.93710 6.16950 6.32441 6.33603 6.44156 6.59811 7.26577 7.40003 8.69448 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.009428 B = 0.004284 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2969.081363 B = 6534.581237 C = 8611.513170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.099 4.099 3 H 0.112 0.888 4 C -0.104 4.104 5 C -0.101 4.101 6 H 0.061 0.939 7 C -0.141 4.141 8 C 0.114 3.886 9 N -0.610 5.610 10 C 0.508 3.492 11 O -0.570 6.570 12 C 0.040 3.960 13 N -0.528 5.528 14 C 0.208 3.792 15 C -0.595 4.595 16 H 0.047 0.953 17 C -0.034 4.034 18 N -0.935 5.935 19 Si 1.118 2.882 20 H -0.279 1.279 21 H -0.280 1.280 22 H -0.264 1.264 23 C 0.136 3.864 24 C -0.015 4.015 25 C -0.209 4.209 26 C -0.214 4.214 27 C -0.056 4.056 28 O -0.200 6.200 29 C 0.101 3.899 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.029 0.971 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.045 0.955 38 H 0.052 0.948 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.121 0.879 42 H -0.006 1.006 43 H -0.029 1.029 44 H 0.252 0.748 45 H 0.081 0.919 46 H 0.077 0.923 47 H 0.168 0.832 48 H 0.178 0.822 49 H 0.231 0.769 50 H 0.083 0.917 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.233 19.157 15.988 25.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.118 4.118 3 H 0.130 0.870 4 C -0.141 4.141 5 C -0.120 4.120 6 H 0.080 0.920 7 C -0.199 4.199 8 C -0.009 4.009 9 N -0.345 5.345 10 C 0.296 3.704 11 O -0.447 6.447 12 C -0.091 4.091 13 N -0.253 5.253 14 C 0.082 3.918 15 C -0.633 4.633 16 H 0.065 0.935 17 C -0.231 4.231 18 N -0.572 5.572 19 Si 0.939 3.061 20 H -0.204 1.204 21 H -0.206 1.206 22 H -0.188 1.188 23 C 0.009 3.991 24 C -0.066 4.066 25 C -0.229 4.229 26 C -0.232 4.232 27 C -0.123 4.123 28 O -0.096 6.096 29 C -0.021 4.021 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.048 0.952 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.139 0.861 42 H 0.012 0.988 43 H -0.012 1.012 44 H 0.061 0.939 45 H 0.099 0.901 46 H 0.095 0.905 47 H 0.186 0.814 48 H 0.195 0.805 49 H 0.247 0.753 50 H 0.102 0.898 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.471 16.658 15.139 22.949 hybrid contribution 0.420 1.322 0.634 1.525 sum -4.052 17.979 15.773 24.258 Atomic orbital electron populations 1.21830 0.95400 1.00695 1.02379 1.21588 0.95962 1.00435 0.93822 0.87040 1.21607 1.01035 0.93422 0.98054 1.21475 1.00352 0.96514 0.93649 0.92043 1.21745 1.01837 0.99917 0.96404 1.21667 0.99824 0.95188 0.84199 1.48147 1.55982 1.12837 1.17502 1.21001 0.77096 0.87352 0.84925 1.90704 1.54618 1.18954 1.80437 1.22056 1.00179 0.95182 0.91669 1.61412 1.25782 1.22453 1.15640 1.19426 0.89578 0.91627 0.91176 1.22214 0.94606 1.17002 1.29494 0.93516 1.27330 0.95652 1.01612 0.98552 1.70928 1.09653 1.35546 1.41110 0.82934 0.74488 0.73582 0.75118 1.20367 1.20594 1.18835 1.20370 0.88092 0.97055 0.93549 1.22493 0.87249 0.92137 1.04672 1.21857 0.99306 0.97391 1.04327 1.22106 0.94817 0.99697 1.06628 1.24838 0.96270 0.91316 0.99849 1.84071 1.21448 1.43136 1.60982 1.22221 1.00863 0.78805 1.00213 0.91285 0.92371 0.95171 0.89873 0.90685 0.91602 0.90754 0.93623 0.92887 0.90914 0.91259 0.86082 0.98793 1.01175 0.93915 0.90123 0.90499 0.81442 0.80483 0.75320 0.89848 0.89186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 8.71 71.98 0.63 -1.79 16 2 C -0.10 -1.37 3.21 -10.57 -0.03 -1.41 16 3 H 0.11 0.97 8.14 -2.38 -0.02 0.95 16 4 C -0.10 -1.40 4.71 30.62 0.14 -1.26 16 5 C -0.10 -1.96 2.53 -10.72 -0.03 -1.99 16 6 H 0.06 1.41 6.34 -2.38 -0.02 1.39 16 7 C -0.14 -2.25 9.20 71.98 0.66 -1.59 16 8 C 0.11 3.10 5.71 86.36 0.49 3.60 16 9 N -0.61 -17.85 2.40 -818.07 -1.96 -19.82 16 10 C 0.51 20.42 7.27 87.66 0.64 21.06 16 11 O -0.57 -30.01 14.95 -3.03 -0.05 -30.05 16 12 C 0.04 1.46 3.68 85.56 0.31 1.78 16 13 N -0.53 -24.63 3.96 -909.95 -3.60 -28.23 16 14 C 0.21 11.68 3.68 85.56 0.31 12.00 16 15 C -0.60 -36.53 8.28 25.60 0.21 -36.32 16 16 H 0.05 2.91 7.26 -2.91 -0.02 2.89 16 17 C -0.03 -2.09 5.46 84.65 0.46 -1.63 16 18 N -0.93 -60.29 13.65 21.45 0.29 -59.99 16 19 Si 1.12 53.86 29.90 68.60 2.05 55.91 16 20 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 21 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 22 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 23 C 0.14 5.48 5.34 85.56 0.46 5.94 16 24 C -0.01 -0.53 6.32 24.83 0.16 -0.37 16 25 C -0.21 -5.61 9.51 22.19 0.21 -5.40 16 26 C -0.21 -4.97 10.91 22.19 0.24 -4.73 16 27 C -0.06 -1.47 12.09 66.97 0.81 -0.66 16 28 O -0.20 -7.44 10.65 -2.51 -0.03 -7.46 16 29 C 0.10 1.92 5.74 86.51 0.50 2.42 16 30 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.03 0.69 5.97 -2.39 -0.01 0.68 16 33 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 34 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 37 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.05 1.85 7.00 -2.39 -0.02 1.83 16 39 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 40 H 0.07 2.29 7.52 -2.38 -0.02 2.27 16 41 H 0.12 3.66 5.89 -2.39 -0.01 3.65 16 42 H -0.01 -0.38 6.80 -2.39 -0.02 -0.39 16 43 H -0.03 -1.65 7.99 -2.39 -0.02 -1.67 16 44 H 0.25 16.46 7.22 -92.71 -0.67 15.79 16 45 H 0.08 2.75 8.05 -2.39 -0.02 2.73 16 46 H 0.08 3.55 6.59 -2.39 -0.02 3.53 16 47 H 0.17 3.45 8.05 -2.91 -0.02 3.43 16 48 H 0.18 2.79 8.06 -2.91 -0.02 2.76 16 49 H 0.23 3.98 8.06 -2.91 -0.02 3.96 16 50 H 0.08 1.36 8.14 -2.38 -0.02 1.35 16 51 H 0.09 1.60 5.95 -2.39 -0.01 1.58 16 Total: -1.00 -84.86 397.34 3.89 -80.98 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: 1.00 Total: 19.01 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: 6.18 Total: -10.34 kcal Atomic # 7 Polarization: -102.76 SS G_CDS: -5.28 Total: -108.04 kcal Atomic # 8 Polarization: -37.44 SS G_CDS: -0.07 Total: -37.52 kcal Atomic # 14 Polarization: 53.86 SS G_CDS: 2.05 Total: 55.91 kcal Total: -84.86 3.89 -80.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078665895.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.155 kcal (2) G-P(sol) polarization free energy of solvation -84.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds