Wall clock time and date at job start Tue Mar 31 2020 19:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47430 * 2 1 4 4 O 1.42902 * 109.47072 * 119.99773 * 2 1 3 5 5 C 1.42898 * 114.00186 * 269.99829 * 4 2 1 6 6 C 1.52997 * 109.47319 * 180.02562 * 5 4 2 7 7 C 1.52992 * 109.47482 * 180.02562 * 6 5 4 8 8 N 1.46507 * 109.47485 * 179.97438 * 7 6 5 9 9 C 1.34770 * 119.99912 * 179.97438 * 8 7 6 10 10 O 1.21286 * 120.00222 * 0.02562 * 9 8 7 11 11 C 1.50698 * 120.00019 * 180.02562 * 9 8 7 12 12 N 1.46899 * 109.47365 * 180.02562 * 11 9 8 13 13 C 1.46893 * 111.00189 * 66.04929 * 12 11 9 14 14 C 1.46901 * 111.00103 * 190.00470 * 12 11 9 15 15 C 1.50696 * 109.47399 * 169.99957 * 14 12 11 16 16 H 1.07997 * 119.99720 * 359.97438 * 15 14 12 17 17 C 1.37878 * 120.00189 * 179.97438 * 15 14 12 18 18 N 1.31513 * 119.99790 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00051 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.46985 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.47058 * 120.00041 * 19 17 15 22 22 H 1.48500 * 109.47167 * 240.00105 * 19 17 15 23 23 C 1.50700 * 109.47191 * 239.99679 * 2 1 3 24 24 C 1.38235 * 120.00065 * 279.72819 * 23 2 1 25 25 C 1.38243 * 119.99790 * 179.78734 * 24 23 2 26 26 C 1.38234 * 119.99569 * 0.44334 * 25 24 23 27 27 C 1.38229 * 120.00413 * 359.80857 * 26 25 24 28 28 C 1.38238 * 119.99548 * 100.00026 * 23 2 1 29 29 H 1.09000 * 109.46986 * 59.99995 * 1 2 3 30 30 H 1.08997 * 109.46833 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46890 * 300.00205 * 1 2 3 32 32 H 1.09002 * 109.47259 * 300.00293 * 5 4 2 33 33 H 1.09001 * 109.47074 * 60.00315 * 5 4 2 34 34 H 1.09002 * 109.47153 * 300.00307 * 6 5 4 35 35 H 1.08998 * 109.47533 * 59.99936 * 6 5 4 36 36 H 1.09002 * 109.47103 * 300.00247 * 7 6 5 37 37 H 1.09001 * 109.47066 * 60.00169 * 7 6 5 38 38 H 0.96992 * 119.99570 * 0.02562 * 8 7 6 39 39 H 1.09002 * 109.47210 * 300.00400 * 11 9 8 40 40 H 1.09001 * 109.47122 * 60.00417 * 11 9 8 41 41 H 1.08997 * 109.47231 * 60.00105 * 13 12 11 42 42 H 1.09004 * 109.47140 * 180.02562 * 13 12 11 43 43 H 1.09003 * 109.47029 * 299.99707 * 13 12 11 44 44 H 1.09008 * 109.47035 * 289.99722 * 14 12 11 45 45 H 1.08998 * 109.47407 * 49.99464 * 14 12 11 46 46 H 0.97008 * 120.00158 * 180.02562 * 18 17 15 47 47 H 1.07997 * 120.00079 * 0.02562 * 24 23 2 48 48 H 1.07993 * 119.99651 * 180.27341 * 25 24 23 49 49 H 1.08004 * 119.99667 * 179.83435 * 26 25 24 50 50 H 1.07999 * 120.00052 * 180.02562 * 27 26 25 51 51 H 1.07994 * 120.00508 * 359.97438 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2001 0.1830 2.2941 6 6 2.7091 -0.6405 3.4789 7 6 2.9160 0.2764 4.6860 8 7 3.4028 -0.5122 5.8206 9 6 3.6575 0.0893 6.9995 10 8 3.4832 1.2834 7.1212 11 6 4.1588 -0.7217 8.1665 12 7 4.3573 0.1587 9.3255 13 6 3.0771 0.7002 9.8006 14 6 5.0650 -0.5431 10.4047 15 6 5.4668 0.4460 11.4683 16 1 5.2213 1.4914 11.3538 17 6 6.1477 0.0162 12.5875 18 7 6.4471 -1.2568 12.7266 19 14 6.6464 1.2424 13.9055 20 1 6.1953 2.6017 13.5131 21 1 6.0159 0.8656 15.1961 22 1 8.1238 1.2346 14.0554 23 6 2.0324 -0.7105 -1.2304 24 6 2.0721 -2.0919 -1.2631 25 6 2.5288 -2.7436 -2.3935 26 6 2.9543 -2.0137 -3.4876 27 6 2.9195 -0.6323 -3.4529 28 6 2.4588 0.0194 -2.3242 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 2.9320 0.9514 2.0450 33 1 1.2538 0.6547 2.5589 34 1 1.9776 -1.4092 3.7281 35 1 3.6555 -1.1119 3.2139 36 1 3.6473 1.0454 4.4370 37 1 1.9694 0.7475 4.9509 38 1 3.5425 -1.4670 5.7232 39 1 3.4273 -1.4905 8.4156 40 1 5.1052 -1.1931 7.9015 41 1 2.4218 -0.1201 10.0931 42 1 3.2531 1.3489 10.6588 43 1 2.6067 1.2742 9.0023 44 1 4.4088 -1.2973 10.8392 45 1 5.9557 -1.0252 10.0017 46 1 6.9258 -1.5593 13.5142 47 1 1.7427 -2.6620 -0.4071 48 1 2.5556 -3.8229 -2.4207 49 1 3.3136 -2.5229 -4.3697 50 1 3.2516 -0.0622 -4.3079 51 1 2.4315 1.0987 -2.2972 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083218930.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:26 Heat of formation + Delta-G solvation = -58.727459 kcal Electronic energy + Delta-G solvation = -27015.432820 eV Core-core repulsion = 23107.691477 eV Total energy + Delta-G solvation = -3907.741342 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.03050 -39.49798 -38.29668 -36.24358 -35.22589 -33.41293 -32.48015 -31.60467 -31.25232 -29.57964 -28.36121 -26.93272 -25.61133 -24.17406 -23.74934 -22.92499 -21.97432 -21.18095 -20.79622 -19.83800 -17.52648 -17.14628 -16.82386 -16.44288 -16.16508 -15.91332 -15.66348 -15.36191 -14.91512 -14.70784 -14.57461 -14.43353 -13.87930 -13.78910 -13.68963 -13.55868 -13.28539 -13.15696 -12.83261 -12.62828 -12.36085 -12.20956 -11.99810 -11.80732 -11.59833 -11.55771 -11.40582 -11.26587 -11.09121 -10.99019 -10.81716 -10.65195 -10.49982 -10.02333 -9.95149 -9.44655 -9.30944 -9.16284 -9.06651 -8.94728 -8.41820 -7.20439 -6.01099 -4.01430 0.90467 1.01760 2.93365 2.99748 3.33890 3.36424 3.41059 3.47307 3.51809 4.24921 4.44327 4.46279 4.56842 4.60341 4.64851 4.72204 4.74631 4.76860 4.88109 5.05632 5.08914 5.10673 5.15872 5.19258 5.22268 5.30607 5.33928 5.35405 5.46444 5.57337 5.64719 5.70755 5.75944 5.82526 5.84258 5.86769 6.05520 6.13140 6.14886 6.33512 6.42412 6.52985 6.58835 6.82511 6.94331 7.25354 7.32577 7.60838 7.84122 8.07908 8.21147 8.51370 8.59976 9.07065 9.62689 11.10040 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.030482 B = 0.001372 C = 0.001349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.357025 B =20405.003162 C =20750.587538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.128 3.872 3 H 0.070 0.930 4 O -0.377 6.377 5 C 0.066 3.934 6 C -0.129 4.129 7 C 0.125 3.875 8 N -0.741 5.741 9 C 0.515 3.485 10 O -0.519 6.519 11 C 0.037 3.963 12 N -0.524 5.524 13 C 0.033 3.967 14 C 0.192 3.808 15 C -0.504 4.504 16 H 0.066 0.934 17 C 0.054 3.946 18 N -0.901 5.901 19 Si 0.899 3.101 20 H -0.271 1.271 21 H -0.285 1.285 22 H -0.284 1.284 23 C -0.086 4.086 24 C -0.091 4.091 25 C -0.123 4.123 26 C -0.120 4.120 27 C -0.122 4.122 28 C -0.113 4.113 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.399 0.601 39 H 0.051 0.949 40 H 0.097 0.903 41 H 0.004 0.996 42 H 0.074 0.926 43 H 0.064 0.936 44 H -0.008 1.008 45 H 0.031 0.969 46 H 0.260 0.740 47 H 0.127 0.873 48 H 0.122 0.878 49 H 0.121 0.879 50 H 0.122 0.878 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.737 -2.425 -33.531 35.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.070 3.930 3 H 0.088 0.912 4 O -0.297 6.297 5 C -0.011 4.011 6 C -0.167 4.167 7 C 0.001 3.999 8 N -0.396 5.396 9 C 0.301 3.699 10 O -0.393 6.393 11 C -0.095 4.095 12 N -0.248 5.248 13 C -0.115 4.115 14 C 0.067 3.933 15 C -0.543 4.543 16 H 0.084 0.916 17 C -0.147 4.147 18 N -0.541 5.541 19 Si 0.727 3.273 20 H -0.196 1.196 21 H -0.211 1.211 22 H -0.210 1.210 23 C -0.087 4.087 24 C -0.110 4.110 25 C -0.141 4.141 26 C -0.138 4.138 27 C -0.140 4.140 28 C -0.131 4.131 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.233 0.767 39 H 0.069 0.931 40 H 0.115 0.885 41 H 0.023 0.977 42 H 0.092 0.908 43 H 0.082 0.918 44 H 0.010 0.990 45 H 0.049 0.951 46 H 0.070 0.930 47 H 0.145 0.855 48 H 0.140 0.860 49 H 0.139 0.861 50 H 0.140 0.860 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -11.444 -1.442 -33.431 35.365 hybrid contribution -0.105 -0.444 0.896 1.006 sum -11.549 -1.887 -32.534 34.575 Atomic orbital electron populations 1.22271 0.94792 1.03228 1.02424 1.20843 0.93713 0.94991 0.83465 0.91246 1.87909 1.86633 1.35374 1.19753 1.22402 0.99817 0.92878 0.86003 1.21667 1.03000 0.99027 0.93012 1.21069 0.99985 0.93945 0.84941 1.46018 1.69951 1.12078 1.11576 1.21020 0.76663 0.88726 0.83445 1.90649 1.50396 1.15295 1.82934 1.21947 1.01266 0.94486 0.91771 1.61846 1.20655 1.35198 1.07137 1.22359 0.89654 0.98640 1.00843 1.19802 0.92807 0.93227 0.87447 1.21206 1.35482 0.94858 1.02729 0.91620 1.24983 0.96031 0.95323 0.98332 1.69968 1.41054 1.14134 1.28895 0.86418 0.78164 0.81479 0.81253 1.19580 1.21145 1.21022 1.19744 1.00042 0.94262 0.94608 1.21024 0.98187 0.93887 0.97853 1.21215 0.99295 1.00068 0.93537 1.21201 0.99721 0.94261 0.98604 1.21105 1.00123 0.94692 0.98095 1.20987 0.98995 0.99757 0.93326 0.91440 0.91519 0.91884 0.92811 0.92834 0.90375 0.90295 0.91491 0.91625 0.76710 0.93089 0.88466 0.97727 0.90752 0.91779 0.98980 0.95143 0.93019 0.85503 0.85956 0.86099 0.85958 0.86058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.02 9.51 37.16 0.35 -0.67 16 2 C 0.13 0.91 2.93 -27.88 -0.08 0.82 16 3 H 0.07 0.43 7.65 -51.93 -0.40 0.03 16 4 O -0.38 -3.22 9.30 -35.23 -0.33 -3.55 16 5 C 0.07 0.49 5.75 37.16 0.21 0.70 16 6 C -0.13 -0.99 5.70 -26.74 -0.15 -1.14 16 7 C 0.12 1.27 5.67 -4.04 -0.02 1.24 16 8 N -0.74 -8.72 5.56 -60.29 -0.33 -9.06 16 9 C 0.51 8.56 7.55 -10.99 -0.08 8.47 16 10 O -0.52 -10.63 14.31 5.55 0.08 -10.55 16 11 C 0.04 0.66 5.45 -4.98 -0.03 0.64 16 12 N -0.52 -12.00 4.49 -245.83 -1.10 -13.11 16 13 C 0.03 0.72 9.03 60.06 0.54 1.26 16 14 C 0.19 5.08 4.72 -4.98 -0.02 5.05 16 15 C -0.50 -14.54 8.46 -34.44 -0.29 -14.83 16 16 H 0.07 1.91 7.12 -52.49 -0.37 1.54 16 17 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 18 N -0.90 -26.87 13.29 55.43 0.74 -26.14 16 19 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 20 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 23 C -0.09 -0.67 4.97 -104.62 -0.52 -1.19 16 24 C -0.09 -0.72 9.36 -39.58 -0.37 -1.09 16 25 C -0.12 -0.85 10.05 -39.58 -0.40 -1.25 16 26 C -0.12 -0.77 10.05 -39.59 -0.40 -1.17 16 27 C -0.12 -0.78 10.05 -39.58 -0.40 -1.18 16 28 C -0.11 -0.77 9.67 -39.58 -0.38 -1.15 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.35 7.87 -51.93 -0.41 -0.05 16 32 H 0.05 0.38 8.09 -51.93 -0.42 -0.04 16 33 H 0.05 0.35 7.87 -51.93 -0.41 -0.05 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.40 3.56 8.47 -40.82 -0.35 3.21 16 39 H 0.05 0.83 8.12 -51.93 -0.42 0.40 16 40 H 0.10 1.60 7.93 -51.93 -0.41 1.19 16 41 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 42 H 0.07 1.70 6.76 -51.93 -0.35 1.35 16 43 H 0.06 1.34 5.88 -51.93 -0.31 1.03 16 44 H -0.01 -0.21 8.12 -51.92 -0.42 -0.63 16 45 H 0.03 0.84 7.93 -51.93 -0.41 0.43 16 46 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 47 H 0.13 0.98 7.77 -52.49 -0.41 0.57 16 48 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 49 H 0.12 0.53 8.06 -52.48 -0.42 0.11 16 50 H 0.12 0.53 8.06 -52.49 -0.42 0.11 16 51 H 0.12 0.61 8.04 -52.49 -0.42 0.19 16 LS Contribution 419.27 15.07 6.32 6.32 Total: -1.00 -34.46 419.27 -10.66 -45.12 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -8.87 Total: -2.04 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -2.14 Total: -4.01 kcal Atomic # 7 Polarization: -47.60 SS G_CDS: -0.70 Total: -48.30 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: -0.25 Total: -14.10 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -34.46 -10.66 -45.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083218930.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.608 kcal (2) G-P(sol) polarization free energy of solvation -34.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds