Wall clock time and date at job start Tue Mar 31 2020 19:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47430 * 2 1 4 4 O 1.42902 * 109.47072 * 119.99773 * 2 1 3 5 5 C 1.42898 * 114.00186 * 269.99829 * 4 2 1 6 6 C 1.52997 * 109.47319 * 180.02562 * 5 4 2 7 7 C 1.52992 * 109.47482 * 180.02562 * 6 5 4 8 8 N 1.46507 * 109.47485 * 179.97438 * 7 6 5 9 9 C 1.34770 * 119.99912 * 179.97438 * 8 7 6 10 10 O 1.21286 * 120.00222 * 0.02562 * 9 8 7 11 11 C 1.50698 * 120.00019 * 180.02562 * 9 8 7 12 12 N 1.46899 * 109.47365 * 180.02562 * 11 9 8 13 13 C 1.46893 * 111.00189 * 66.04929 * 12 11 9 14 14 C 1.46901 * 111.00103 * 190.00470 * 12 11 9 15 15 C 1.50696 * 109.47399 * 169.99957 * 14 12 11 16 16 H 1.07997 * 119.99720 * 359.97438 * 15 14 12 17 17 C 1.37878 * 120.00189 * 179.97438 * 15 14 12 18 18 N 1.31513 * 119.99790 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00051 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.46985 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.47058 * 120.00041 * 19 17 15 22 22 H 1.48500 * 109.47167 * 240.00105 * 19 17 15 23 23 C 1.50700 * 109.47191 * 239.99679 * 2 1 3 24 24 C 1.38235 * 120.00065 * 279.72819 * 23 2 1 25 25 C 1.38243 * 119.99790 * 179.78734 * 24 23 2 26 26 C 1.38234 * 119.99569 * 0.44334 * 25 24 23 27 27 C 1.38229 * 120.00413 * 359.80857 * 26 25 24 28 28 C 1.38238 * 119.99548 * 100.00026 * 23 2 1 29 29 H 1.09000 * 109.46986 * 59.99995 * 1 2 3 30 30 H 1.08997 * 109.46833 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46890 * 300.00205 * 1 2 3 32 32 H 1.09002 * 109.47259 * 300.00293 * 5 4 2 33 33 H 1.09001 * 109.47074 * 60.00315 * 5 4 2 34 34 H 1.09002 * 109.47153 * 300.00307 * 6 5 4 35 35 H 1.08998 * 109.47533 * 59.99936 * 6 5 4 36 36 H 1.09002 * 109.47103 * 300.00247 * 7 6 5 37 37 H 1.09001 * 109.47066 * 60.00169 * 7 6 5 38 38 H 0.96992 * 119.99570 * 0.02562 * 8 7 6 39 39 H 1.09002 * 109.47210 * 300.00400 * 11 9 8 40 40 H 1.09001 * 109.47122 * 60.00417 * 11 9 8 41 41 H 1.08997 * 109.47231 * 60.00105 * 13 12 11 42 42 H 1.09004 * 109.47140 * 180.02562 * 13 12 11 43 43 H 1.09003 * 109.47029 * 299.99707 * 13 12 11 44 44 H 1.09008 * 109.47035 * 289.99722 * 14 12 11 45 45 H 1.08998 * 109.47407 * 49.99464 * 14 12 11 46 46 H 0.97008 * 120.00158 * 180.02562 * 18 17 15 47 47 H 1.07997 * 120.00079 * 0.02562 * 24 23 2 48 48 H 1.07993 * 119.99651 * 180.27341 * 25 24 23 49 49 H 1.08004 * 119.99667 * 179.83435 * 26 25 24 50 50 H 1.07999 * 120.00052 * 180.02562 * 27 26 25 51 51 H 1.07994 * 120.00508 * 359.97438 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2001 0.1830 2.2941 6 6 2.7091 -0.6405 3.4789 7 6 2.9160 0.2764 4.6860 8 7 3.4028 -0.5122 5.8206 9 6 3.6575 0.0893 6.9995 10 8 3.4832 1.2834 7.1212 11 6 4.1588 -0.7217 8.1665 12 7 4.3573 0.1587 9.3255 13 6 3.0771 0.7002 9.8006 14 6 5.0650 -0.5431 10.4047 15 6 5.4668 0.4460 11.4683 16 1 5.2213 1.4914 11.3538 17 6 6.1477 0.0162 12.5875 18 7 6.4471 -1.2568 12.7266 19 14 6.6464 1.2424 13.9055 20 1 6.1953 2.6017 13.5131 21 1 6.0159 0.8656 15.1961 22 1 8.1238 1.2346 14.0554 23 6 2.0324 -0.7105 -1.2304 24 6 2.0721 -2.0919 -1.2631 25 6 2.5288 -2.7436 -2.3935 26 6 2.9543 -2.0137 -3.4876 27 6 2.9195 -0.6323 -3.4529 28 6 2.4588 0.0194 -2.3242 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 2.9320 0.9514 2.0450 33 1 1.2538 0.6547 2.5589 34 1 1.9776 -1.4092 3.7281 35 1 3.6555 -1.1119 3.2139 36 1 3.6473 1.0454 4.4370 37 1 1.9694 0.7475 4.9509 38 1 3.5425 -1.4670 5.7232 39 1 3.4273 -1.4905 8.4156 40 1 5.1052 -1.1931 7.9015 41 1 2.4218 -0.1201 10.0931 42 1 3.2531 1.3489 10.6588 43 1 2.6067 1.2742 9.0023 44 1 4.4088 -1.2973 10.8392 45 1 5.9557 -1.0252 10.0017 46 1 6.9258 -1.5593 13.5142 47 1 1.7427 -2.6620 -0.4071 48 1 2.5556 -3.8229 -2.4207 49 1 3.3136 -2.5229 -4.3697 50 1 3.2516 -0.0622 -4.3079 51 1 2.4315 1.0987 -2.2972 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083218930.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:24 Heat of formation + Delta-G solvation = -81.009042 kcal Electronic energy + Delta-G solvation = -27016.399022 eV Core-core repulsion = 23107.691477 eV Total energy + Delta-G solvation = -3908.707544 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.84542 -40.50857 -38.88550 -37.82809 -36.38433 -34.62028 -34.08292 -32.42433 -31.75516 -30.13751 -29.92850 -28.74379 -26.74973 -25.59146 -24.54251 -23.47126 -22.74721 -22.48925 -21.69245 -21.20333 -18.65767 -18.05837 -17.84466 -17.69922 -17.19413 -16.78442 -16.67576 -16.43730 -16.39126 -15.74101 -15.52786 -15.45049 -15.17097 -14.98363 -14.80891 -14.24524 -14.19535 -14.02389 -13.77101 -13.61506 -13.52898 -13.25284 -13.11469 -12.91742 -12.74511 -12.66792 -12.60122 -12.58282 -12.34739 -12.14827 -12.07914 -11.96590 -11.86095 -11.59623 -11.41822 -10.69339 -10.60687 -10.58376 -10.06837 -9.80928 -9.66115 -9.00608 -8.20720 -6.29612 0.40567 0.51460 1.41261 1.42083 1.56112 1.67402 2.02211 2.41949 2.66819 2.93051 3.12022 3.40884 3.73920 3.86367 3.95346 3.96218 4.09930 4.15631 4.18737 4.24967 4.30766 4.32303 4.34510 4.43643 4.51004 4.51787 4.59216 4.62454 4.66262 4.69469 4.70104 4.81565 4.87286 5.09085 5.10432 5.11178 5.14730 5.16380 5.18071 5.25001 5.28453 5.49119 5.57532 5.63320 5.64215 5.65031 6.02556 6.11312 6.27721 6.29029 6.45589 6.69325 6.85378 7.32428 7.39801 8.90332 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.030482 B = 0.001372 C = 0.001349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.357025 B =20405.003162 C =20750.587538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.125 3.875 3 H 0.079 0.921 4 O -0.392 6.392 5 C 0.065 3.935 6 C -0.116 4.116 7 C 0.126 3.874 8 N -0.720 5.720 9 C 0.520 3.480 10 O -0.562 6.562 11 C 0.034 3.966 12 N -0.542 5.542 13 C 0.043 3.957 14 C 0.207 3.793 15 C -0.527 4.527 16 H 0.056 0.944 17 C 0.005 3.995 18 N -0.931 5.931 19 Si 0.968 3.032 20 H -0.269 1.269 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.100 4.100 24 C -0.110 4.110 25 C -0.133 4.133 26 C -0.128 4.128 27 C -0.128 4.128 28 C -0.122 4.122 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.416 0.584 39 H 0.073 0.927 40 H 0.109 0.891 41 H 0.014 0.986 42 H 0.053 0.947 43 H 0.073 0.927 44 H -0.028 1.028 45 H 0.014 0.986 46 H 0.265 0.735 47 H 0.121 0.879 48 H 0.135 0.865 49 H 0.140 0.860 50 H 0.142 0.858 51 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.943 -2.203 -34.793 36.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.068 3.932 3 H 0.097 0.903 4 O -0.312 6.312 5 C -0.012 4.012 6 C -0.154 4.154 7 C 0.003 3.997 8 N -0.374 5.374 9 C 0.306 3.694 10 O -0.440 6.440 11 C -0.098 4.098 12 N -0.267 5.267 13 C -0.105 4.105 14 C 0.082 3.918 15 C -0.565 4.565 16 H 0.074 0.926 17 C -0.193 4.193 18 N -0.571 5.571 19 Si 0.793 3.207 20 H -0.193 1.193 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.100 4.100 24 C -0.128 4.128 25 C -0.151 4.151 26 C -0.146 4.146 27 C -0.146 4.146 28 C -0.140 4.140 29 H 0.094 0.906 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.253 0.747 39 H 0.090 0.910 40 H 0.127 0.873 41 H 0.032 0.968 42 H 0.072 0.928 43 H 0.091 0.909 44 H -0.010 1.010 45 H 0.032 0.968 46 H 0.074 0.926 47 H 0.139 0.861 48 H 0.153 0.847 49 H 0.158 0.842 50 H 0.160 0.840 51 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -11.666 -1.264 -34.743 36.671 hybrid contribution -0.061 -0.572 1.165 1.299 sum -11.727 -1.836 -33.579 35.615 Atomic orbital electron populations 1.22237 0.94160 1.02868 1.03051 1.20951 0.94220 0.95237 0.82833 0.90316 1.87881 1.86867 1.36122 1.20325 1.22421 1.00396 0.92747 0.85675 1.21518 1.03351 0.98530 0.91983 1.21143 0.99486 0.94135 0.84968 1.45800 1.68044 1.13044 1.10501 1.20710 0.76493 0.87901 0.84288 1.90634 1.52720 1.16898 1.83783 1.22037 1.02763 0.94453 0.90515 1.61688 1.21428 1.36234 1.07341 1.22239 0.89343 0.98618 1.00332 1.19459 0.92069 0.92324 0.87986 1.21478 1.36113 0.94872 1.04024 0.92552 1.25835 0.95743 0.97212 1.00484 1.70065 1.41469 1.15830 1.29772 0.85354 0.78013 0.78990 0.78379 1.19297 1.20152 1.20199 1.19917 1.00491 0.94371 0.95213 1.21116 0.99154 0.94276 0.98216 1.21451 0.99192 1.00952 0.93518 1.21506 0.99394 0.94585 0.99086 1.21431 0.99591 0.94987 0.98606 1.21249 0.98834 1.00688 0.93259 0.90574 0.92351 0.91455 0.92457 0.91991 0.89684 0.90093 0.92230 0.91836 0.74747 0.90962 0.87298 0.96768 0.92801 0.90874 1.01004 0.96798 0.92586 0.86092 0.84699 0.84210 0.83988 0.84518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.85 9.51 71.98 0.68 -1.16 16 2 C 0.12 1.66 2.93 29.85 0.09 1.74 16 3 H 0.08 0.86 7.65 -2.39 -0.02 0.84 16 4 O -0.39 -6.29 9.30 -148.98 -1.39 -7.68 16 5 C 0.06 0.86 5.75 71.98 0.41 1.27 16 6 C -0.12 -1.56 5.70 30.59 0.17 -1.39 16 7 C 0.13 2.37 5.67 86.38 0.49 2.86 16 8 N -0.72 -15.64 5.56 -463.06 -2.57 -18.21 16 9 C 0.52 16.71 7.55 87.66 0.66 17.37 16 10 O -0.56 -22.83 14.31 -3.05 -0.04 -22.87 16 11 C 0.03 1.17 5.45 85.56 0.47 1.63 16 12 N -0.54 -24.97 4.49 -931.66 -4.18 -29.16 16 13 C 0.04 1.86 9.03 127.69 1.15 3.01 16 14 C 0.21 11.17 4.72 85.56 0.40 11.58 16 15 C -0.53 -30.80 8.46 25.60 0.22 -30.58 16 16 H 0.06 3.33 7.12 -2.91 -0.02 3.31 16 17 C 0.01 0.31 5.46 84.66 0.46 0.78 16 18 N -0.93 -55.80 13.29 21.45 0.28 -55.52 16 19 Si 0.97 45.20 29.54 68.60 2.03 47.22 16 20 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 21 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 22 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 23 C -0.10 -1.47 4.97 -19.87 -0.10 -1.57 16 24 C -0.11 -1.71 9.36 22.27 0.21 -1.50 16 25 C -0.13 -1.77 10.05 22.27 0.22 -1.54 16 26 C -0.13 -1.48 10.05 22.27 0.22 -1.25 16 27 C -0.13 -1.44 10.05 22.27 0.22 -1.22 16 28 C -0.12 -1.53 9.67 22.27 0.22 -1.31 16 29 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.07 0.68 7.87 -2.39 -0.02 0.66 16 32 H 0.06 0.72 8.09 -2.39 -0.02 0.70 16 33 H 0.06 0.72 7.87 -2.39 -0.02 0.70 16 34 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.42 6.41 8.47 -92.71 -0.79 5.62 16 39 H 0.07 2.22 8.12 -2.39 -0.02 2.20 16 40 H 0.11 3.49 7.93 -2.39 -0.02 3.47 16 41 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 42 H 0.05 2.51 6.76 -2.38 -0.02 2.49 16 43 H 0.07 3.04 5.88 -2.39 -0.01 3.03 16 44 H -0.03 -1.57 8.12 -2.38 -0.02 -1.59 16 45 H 0.01 0.78 7.93 -2.39 -0.02 0.77 16 46 H 0.27 14.87 8.31 -92.70 -0.77 14.10 16 47 H 0.12 1.91 7.77 -2.91 -0.02 1.89 16 48 H 0.14 1.30 8.06 -2.91 -0.02 1.28 16 49 H 0.14 0.98 8.06 -2.91 -0.02 0.96 16 50 H 0.14 0.94 8.06 -2.91 -0.02 0.92 16 51 H 0.14 1.16 8.04 -2.91 -0.02 1.14 16 Total: -1.00 -74.05 419.27 0.44 -73.61 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: 0.11 Total: 13.90 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: 6.21 Total: -1.29 kcal Atomic # 7 Polarization: -96.41 SS G_CDS: -6.47 Total: -102.88 kcal Atomic # 8 Polarization: -29.12 SS G_CDS: -1.43 Total: -30.55 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Total: -74.05 0.44 -73.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083218930.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.402 kcal (2) G-P(sol) polarization free energy of solvation -74.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds