Wall clock time and date at job start Tue Mar 31 2020 19:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35901 * 117.00165 * 2 1 4 4 C 1.38723 * 120.05865 * 180.02562 * 3 2 1 5 5 C 1.38151 * 119.94811 * 179.97438 * 4 3 2 6 6 C 1.38272 * 120.04920 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.93879 * 179.97438 * 6 5 4 8 8 H 1.08996 * 109.47632 * 20.00426 * 7 6 5 9 9 C 1.53000 * 109.46990 * 259.99860 * 7 6 5 10 10 N 1.46906 * 109.46975 * 140.00136 * 7 6 5 11 11 C 1.46901 * 110.99793 * 303.95480 * 10 7 6 12 12 C 1.46898 * 110.99820 * 179.97438 * 10 7 6 13 13 C 1.53004 * 109.46619 * 189.99887 * 12 10 7 14 14 C 1.50701 * 109.46759 * 179.97438 * 13 12 10 15 15 O 1.21283 * 120.00303 * 0.02562 * 14 13 12 16 16 N 1.34779 * 119.99694 * 179.97438 * 14 13 12 17 17 C 1.46492 * 120.00282 * 0.02562 * 16 14 13 18 18 C 1.46507 * 119.99641 * 180.02562 * 16 14 13 19 19 C 1.50706 * 109.46607 * 90.00567 * 18 16 14 20 20 H 1.07991 * 120.00495 * 359.97438 * 19 18 16 21 21 C 1.37885 * 119.99447 * 180.02562 * 19 18 16 22 22 N 1.31514 * 120.00224 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 119.99584 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47422 * 59.99992 * 23 21 19 25 25 H 1.48503 * 109.47053 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47248 * 299.99796 * 23 21 19 27 27 C 1.38263 * 120.11304 * 0.27397 * 6 5 4 28 28 C 1.38148 * 120.05681 * 359.45129 * 27 6 5 29 29 H 1.08994 * 109.48027 * 59.99118 * 1 2 3 30 30 H 1.09005 * 109.47127 * 180.02562 * 1 2 3 31 31 H 1.09011 * 109.46764 * 299.99264 * 1 2 3 32 32 H 1.08007 * 120.02898 * 359.96132 * 4 3 2 33 33 H 1.07998 * 119.97553 * 180.02562 * 5 4 3 34 34 H 1.08992 * 109.47626 * 300.00262 * 9 7 6 35 35 H 1.08998 * 109.47248 * 60.00907 * 9 7 6 36 36 H 1.09006 * 109.46931 * 180.02562 * 9 7 6 37 37 H 1.09002 * 109.47401 * 59.99808 * 11 10 7 38 38 H 1.09001 * 109.46874 * 299.99821 * 11 10 7 39 39 H 1.09004 * 109.46970 * 179.97438 * 11 10 7 40 40 H 1.08994 * 109.47410 * 309.99936 * 12 10 7 41 41 H 1.08999 * 109.47216 * 70.00266 * 12 10 7 42 42 H 1.08994 * 109.47270 * 300.00135 * 13 12 10 43 43 H 1.08999 * 109.47017 * 60.00257 * 13 12 10 44 44 H 1.09004 * 109.47334 * 89.99382 * 17 16 14 45 45 H 1.09003 * 109.47171 * 209.99933 * 17 16 14 46 46 H 1.09001 * 109.47239 * 329.99404 * 17 16 14 47 47 H 1.09002 * 109.47141 * 209.99890 * 18 16 14 48 48 H 1.08995 * 109.47372 * 330.00562 * 18 16 14 49 49 H 0.96997 * 119.99919 * 180.02562 * 22 21 19 50 50 H 1.08006 * 119.97090 * 179.70539 * 27 6 5 51 51 H 1.07995 * 120.02693 * 180.27512 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4312 1.2849 -0.0005 5 6 4.0561 2.5170 -0.0011 6 6 3.3018 3.6758 -0.0005 7 6 3.9860 5.0186 -0.0005 8 1 5.0112 4.9040 -0.3525 9 6 3.9949 5.5864 1.4202 10 7 3.2625 5.9367 -0.8903 11 6 3.1523 5.3793 -2.2450 12 6 3.9021 7.2589 -0.9150 13 6 2.9939 8.2511 -1.6442 14 6 3.6498 9.6077 -1.6690 15 8 4.7367 9.7654 -1.1546 16 7 3.0288 10.6456 -2.2638 17 6 1.7162 10.4552 -2.8856 18 6 3.6667 11.9643 -2.2884 19 6 4.5157 12.0885 -3.5273 20 1 4.5746 11.2673 -4.2262 21 6 5.2181 13.2504 -3.7680 22 7 5.1467 14.2503 -2.9167 23 14 6.2709 13.4041 -5.3033 24 1 5.4165 13.2454 -6.5075 25 1 6.9174 14.7408 -5.3283 26 1 7.3155 12.3486 -5.2949 27 6 1.9210 3.6048 0.0063 28 6 1.2914 2.3751 0.0011 29 1 -0.3635 0.5139 -0.8898 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8902 32 1 4.0208 0.3799 -0.0003 33 1 5.1345 2.5751 -0.0019 34 1 2.9697 5.7010 1.7721 35 1 4.5317 4.9052 2.0804 36 1 4.4894 6.5578 1.4201 37 1 2.6127 4.4330 -2.2057 38 1 4.1498 5.2122 -2.6514 39 1 2.6121 6.0789 -2.8829 40 1 4.0683 7.6013 0.1063 41 1 4.8575 7.1908 -1.4354 42 1 2.8278 7.9087 -2.6655 43 1 2.0386 8.3193 -1.1239 44 1 0.9346 10.6450 -2.1499 45 1 1.6055 11.1476 -3.7202 46 1 1.6316 9.4312 -3.2495 47 1 2.8997 12.7388 -2.2944 48 1 4.2941 12.0810 -1.4048 49 1 5.6405 15.0677 -3.0863 50 1 1.3341 4.5114 0.0115 51 1 0.2128 2.3202 0.0019 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092792521.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:44:34 Heat of formation + Delta-G solvation = -38.959228 kcal Electronic energy + Delta-G solvation = -28555.692176 eV Core-core repulsion = 24648.808048 eV Total energy + Delta-G solvation = -3906.884127 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.54550 -39.28495 -38.58214 -36.82217 -34.77664 -32.86519 -32.45320 -31.33057 -30.26990 -29.47826 -27.86945 -27.42614 -25.94449 -25.37323 -24.04038 -23.10570 -22.53967 -21.30359 -20.01511 -18.45322 -18.30562 -16.84299 -16.51924 -16.34365 -16.08723 -16.04003 -15.52503 -15.20276 -14.83084 -14.72084 -14.59679 -14.13236 -13.99244 -13.77245 -13.58046 -13.17082 -13.09613 -12.82348 -12.44247 -12.33969 -12.26913 -12.17501 -12.01826 -11.85025 -11.80102 -11.57434 -11.51043 -11.19648 -11.13303 -11.05876 -10.89896 -10.88830 -10.54670 -10.47711 -10.14851 -9.63027 -9.21407 -8.86315 -8.42398 -8.38968 -8.31600 -7.61294 -6.03226 -4.07976 1.10968 1.18974 2.95703 3.31938 3.36317 3.38327 3.47274 3.49210 3.71133 4.17923 4.46144 4.53552 4.54774 4.63345 4.77308 4.78389 5.04475 5.07665 5.08683 5.12931 5.18015 5.24334 5.26469 5.29825 5.38333 5.44536 5.47026 5.53973 5.61461 5.68340 5.74552 5.80995 5.83907 5.94292 5.96493 6.03331 6.07770 6.12995 6.18488 6.22932 6.24201 6.43046 6.51185 7.01416 7.03247 7.09586 7.11016 7.46337 7.56657 7.93205 8.24980 8.45486 8.91458 9.12976 9.56932 11.04744 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.024467 B = 0.001946 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.134540 B =14387.869773 C =14533.258017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.321 6.321 3 C 0.121 3.879 4 C -0.154 4.154 5 C -0.077 4.077 6 C -0.111 4.111 7 C 0.125 3.875 8 H 0.049 0.951 9 C -0.145 4.145 10 N -0.537 5.537 11 C 0.018 3.982 12 C 0.067 3.933 13 C -0.134 4.134 14 C 0.504 3.496 15 O -0.546 6.546 16 N -0.604 5.604 17 C 0.085 3.915 18 C 0.245 3.755 19 C -0.526 4.526 20 H 0.056 0.944 21 C 0.060 3.940 22 N -0.895 5.895 23 Si 0.898 3.102 24 H -0.277 1.277 25 H -0.286 1.286 26 H -0.277 1.277 27 C -0.052 4.052 28 C -0.211 4.211 29 H 0.055 0.945 30 H 0.098 0.902 31 H 0.055 0.945 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.025 0.975 39 H 0.070 0.930 40 H 0.088 0.912 41 H 0.043 0.957 42 H 0.085 0.915 43 H 0.092 0.908 44 H 0.044 0.956 45 H 0.072 0.928 46 H 0.057 0.943 47 H 0.031 0.969 48 H 0.043 0.957 49 H 0.264 0.736 50 H 0.135 0.865 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.934 -26.567 6.110 29.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.235 6.235 3 C 0.076 3.924 4 C -0.173 4.173 5 C -0.096 4.096 6 C -0.111 4.111 7 C 0.017 3.983 8 H 0.067 0.933 9 C -0.202 4.202 10 N -0.261 5.261 11 C -0.130 4.130 12 C -0.060 4.060 13 C -0.174 4.174 14 C 0.290 3.710 15 O -0.424 6.424 16 N -0.336 5.336 17 C -0.060 4.060 18 C 0.126 3.874 19 C -0.565 4.565 20 H 0.074 0.926 21 C -0.142 4.142 22 N -0.534 5.534 23 Si 0.726 3.274 24 H -0.203 1.203 25 H -0.212 1.212 26 H -0.202 1.202 27 C -0.070 4.070 28 C -0.230 4.230 29 H 0.074 0.926 30 H 0.116 0.884 31 H 0.074 0.926 32 H 0.146 0.854 33 H 0.145 0.855 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.043 0.957 39 H 0.089 0.911 40 H 0.106 0.894 41 H 0.061 0.939 42 H 0.103 0.897 43 H 0.111 0.889 44 H 0.062 0.938 45 H 0.091 0.909 46 H 0.075 0.925 47 H 0.049 0.951 48 H 0.061 0.939 49 H 0.073 0.927 50 H 0.153 0.847 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.691 -26.388 6.598 29.226 hybrid contribution 1.012 0.210 -1.375 1.720 sum -9.679 -26.178 5.223 28.395 Atomic orbital electron populations 1.23041 0.78427 1.03820 1.01434 1.86052 1.21370 1.27193 1.88855 1.19058 0.92377 0.84106 0.96857 1.20339 0.91346 0.98453 1.07117 1.20849 0.99768 0.91020 0.97923 1.19701 0.93909 0.94086 1.03429 1.20450 0.94682 0.88950 0.94235 0.93335 1.21920 1.02861 1.01140 0.94297 1.62032 1.51835 1.02648 1.09604 1.22470 1.00358 1.00528 0.89615 1.21901 0.95193 0.86937 1.01987 1.21638 1.00497 0.93213 1.02095 1.20322 0.85760 0.85783 0.79105 1.90662 1.20797 1.84405 1.46541 1.48159 1.18931 1.12045 1.54457 1.21623 0.84885 1.01419 0.98036 1.19275 0.93005 0.76900 0.98266 1.21397 1.28148 1.00154 1.06788 0.92602 1.24944 0.96588 0.95663 0.96975 1.69922 1.42446 1.05050 1.35958 0.86560 0.80619 0.77206 0.83029 1.20275 1.21161 1.20215 1.20887 0.94064 0.97081 0.94975 1.21278 0.99972 0.92386 1.09379 0.92616 0.88360 0.92646 0.85428 0.85546 0.91639 0.92206 0.91529 0.91287 0.95650 0.91106 0.89406 0.93860 0.89671 0.88948 0.93759 0.90911 0.92460 0.95071 0.93859 0.92678 0.84691 0.85620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -2.94 10.50 -19.43 -0.20 -3.14 16 3 C 0.12 1.17 6.69 -39.22 -0.26 0.90 16 4 C -0.15 -1.44 9.99 -39.43 -0.39 -1.83 16 5 C -0.08 -0.71 9.66 -39.60 -0.38 -1.09 16 6 C -0.11 -1.08 3.77 -104.60 -0.39 -1.48 16 7 C 0.12 1.31 2.27 -68.86 -0.16 1.15 16 8 H 0.05 0.53 8.00 -51.93 -0.42 0.11 16 9 C -0.14 -1.45 8.96 37.16 0.33 -1.12 16 10 N -0.54 -6.10 3.97 -236.28 -0.94 -7.04 16 11 C 0.02 0.20 8.94 60.07 0.54 0.73 16 12 C 0.07 0.94 4.06 -3.82 -0.02 0.93 16 13 C -0.13 -1.96 4.18 -27.88 -0.12 -2.08 16 14 C 0.50 10.43 7.67 -10.98 -0.08 10.34 16 15 O -0.55 -13.69 15.56 5.56 0.09 -13.61 16 16 N -0.60 -12.89 2.86 -182.95 -0.52 -13.41 16 17 C 0.08 1.34 10.24 59.84 0.61 1.95 16 18 C 0.24 6.48 5.16 -5.19 -0.03 6.46 16 19 C -0.53 -15.07 9.39 -34.43 -0.32 -15.40 16 20 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 21 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 22 N -0.89 -26.79 13.29 55.43 0.74 -26.05 16 23 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 27 C -0.05 -0.49 8.07 -39.61 -0.32 -0.81 16 28 C -0.21 -1.88 9.04 -39.43 -0.36 -2.23 16 29 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 30 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.26 7.66 -51.92 -0.40 -0.14 16 32 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 33 H 0.13 0.97 8.03 -52.49 -0.42 0.55 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.73 6.20 -51.93 -0.32 0.41 16 37 H 0.07 0.69 6.12 -51.93 -0.32 0.38 16 38 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.07 0.73 6.30 -51.93 -0.33 0.40 16 40 H 0.09 1.29 5.78 -51.93 -0.30 0.99 16 41 H 0.04 0.68 8.08 -51.93 -0.42 0.27 16 42 H 0.09 1.13 5.73 -51.93 -0.30 0.83 16 43 H 0.09 1.19 8.11 -51.93 -0.42 0.77 16 44 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 46 H 0.06 0.74 6.44 -51.93 -0.33 0.40 16 47 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 48 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 49 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 50 H 0.14 1.26 7.72 -52.48 -0.41 0.86 16 51 H 0.13 0.88 6.30 -52.49 -0.33 0.55 16 LS Contribution 407.01 15.07 6.13 6.13 Total: -1.00 -33.85 407.01 -8.60 -42.44 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -8.41 Total: -1.55 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -0.46 Total: -0.78 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: -0.73 Total: -46.51 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.12 Total: -16.75 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.85 -8.60 -42.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092792521.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.485 kcal (2) G-P(sol) polarization free energy of solvation -33.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds