Wall clock time and date at job start Tue Mar 31 2020 19:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35901 * 117.00165 * 2 1 4 4 C 1.38723 * 120.05865 * 180.02562 * 3 2 1 5 5 C 1.38151 * 119.94811 * 179.97438 * 4 3 2 6 6 C 1.38272 * 120.04920 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.93879 * 179.97438 * 6 5 4 8 8 H 1.08996 * 109.47632 * 20.00426 * 7 6 5 9 9 C 1.53000 * 109.46990 * 259.99860 * 7 6 5 10 10 N 1.46906 * 109.46975 * 140.00136 * 7 6 5 11 11 C 1.46901 * 110.99793 * 303.95480 * 10 7 6 12 12 C 1.46898 * 110.99820 * 179.97438 * 10 7 6 13 13 C 1.53004 * 109.46619 * 189.99887 * 12 10 7 14 14 C 1.50701 * 109.46759 * 179.97438 * 13 12 10 15 15 O 1.21283 * 120.00303 * 0.02562 * 14 13 12 16 16 N 1.34779 * 119.99694 * 179.97438 * 14 13 12 17 17 C 1.46492 * 120.00282 * 0.02562 * 16 14 13 18 18 C 1.46507 * 119.99641 * 180.02562 * 16 14 13 19 19 C 1.50706 * 109.46607 * 90.00567 * 18 16 14 20 20 H 1.07991 * 120.00495 * 359.97438 * 19 18 16 21 21 C 1.37885 * 119.99447 * 180.02562 * 19 18 16 22 22 N 1.31514 * 120.00224 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 119.99584 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47422 * 59.99992 * 23 21 19 25 25 H 1.48503 * 109.47053 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47248 * 299.99796 * 23 21 19 27 27 C 1.38263 * 120.11304 * 0.27397 * 6 5 4 28 28 C 1.38148 * 120.05681 * 359.45129 * 27 6 5 29 29 H 1.08994 * 109.48027 * 59.99118 * 1 2 3 30 30 H 1.09005 * 109.47127 * 180.02562 * 1 2 3 31 31 H 1.09011 * 109.46764 * 299.99264 * 1 2 3 32 32 H 1.08007 * 120.02898 * 359.96132 * 4 3 2 33 33 H 1.07998 * 119.97553 * 180.02562 * 5 4 3 34 34 H 1.08992 * 109.47626 * 300.00262 * 9 7 6 35 35 H 1.08998 * 109.47248 * 60.00907 * 9 7 6 36 36 H 1.09006 * 109.46931 * 180.02562 * 9 7 6 37 37 H 1.09002 * 109.47401 * 59.99808 * 11 10 7 38 38 H 1.09001 * 109.46874 * 299.99821 * 11 10 7 39 39 H 1.09004 * 109.46970 * 179.97438 * 11 10 7 40 40 H 1.08994 * 109.47410 * 309.99936 * 12 10 7 41 41 H 1.08999 * 109.47216 * 70.00266 * 12 10 7 42 42 H 1.08994 * 109.47270 * 300.00135 * 13 12 10 43 43 H 1.08999 * 109.47017 * 60.00257 * 13 12 10 44 44 H 1.09004 * 109.47334 * 89.99382 * 17 16 14 45 45 H 1.09003 * 109.47171 * 209.99933 * 17 16 14 46 46 H 1.09001 * 109.47239 * 329.99404 * 17 16 14 47 47 H 1.09002 * 109.47141 * 209.99890 * 18 16 14 48 48 H 1.08995 * 109.47372 * 330.00562 * 18 16 14 49 49 H 0.96997 * 119.99919 * 180.02562 * 22 21 19 50 50 H 1.08006 * 119.97090 * 179.70539 * 27 6 5 51 51 H 1.07995 * 120.02693 * 180.27512 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4312 1.2849 -0.0005 5 6 4.0561 2.5170 -0.0011 6 6 3.3018 3.6758 -0.0005 7 6 3.9860 5.0186 -0.0005 8 1 5.0112 4.9040 -0.3525 9 6 3.9949 5.5864 1.4202 10 7 3.2625 5.9367 -0.8903 11 6 3.1523 5.3793 -2.2450 12 6 3.9021 7.2589 -0.9150 13 6 2.9939 8.2511 -1.6442 14 6 3.6498 9.6077 -1.6690 15 8 4.7367 9.7654 -1.1546 16 7 3.0288 10.6456 -2.2638 17 6 1.7162 10.4552 -2.8856 18 6 3.6667 11.9643 -2.2884 19 6 4.5157 12.0885 -3.5273 20 1 4.5746 11.2673 -4.2262 21 6 5.2181 13.2504 -3.7680 22 7 5.1467 14.2503 -2.9167 23 14 6.2709 13.4041 -5.3033 24 1 5.4165 13.2454 -6.5075 25 1 6.9174 14.7408 -5.3283 26 1 7.3155 12.3486 -5.2949 27 6 1.9210 3.6048 0.0063 28 6 1.2914 2.3751 0.0011 29 1 -0.3635 0.5139 -0.8898 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8902 32 1 4.0208 0.3799 -0.0003 33 1 5.1345 2.5751 -0.0019 34 1 2.9697 5.7010 1.7721 35 1 4.5317 4.9052 2.0804 36 1 4.4894 6.5578 1.4201 37 1 2.6127 4.4330 -2.2057 38 1 4.1498 5.2122 -2.6514 39 1 2.6121 6.0789 -2.8829 40 1 4.0683 7.6013 0.1063 41 1 4.8575 7.1908 -1.4354 42 1 2.8278 7.9087 -2.6655 43 1 2.0386 8.3193 -1.1239 44 1 0.9346 10.6450 -2.1499 45 1 1.6055 11.1476 -3.7202 46 1 1.6316 9.4312 -3.2495 47 1 2.8997 12.7388 -2.2944 48 1 4.2941 12.0810 -1.4048 49 1 5.6405 15.0677 -3.0863 50 1 1.3341 4.5114 0.0115 51 1 0.2128 2.3202 0.0019 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092792521.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:44:33 Heat of formation + Delta-G solvation = -60.148169 kcal Electronic energy + Delta-G solvation = -28556.610997 eV Core-core repulsion = 24648.808048 eV Total energy + Delta-G solvation = -3907.802949 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.24930 -40.69822 -39.55144 -37.66301 -36.55546 -34.75541 -33.65530 -32.00777 -31.43951 -30.22833 -29.57389 -28.06820 -27.31485 -26.58395 -25.28365 -24.26255 -23.55119 -22.34376 -20.88812 -19.90781 -19.04139 -18.70029 -17.98234 -17.31373 -17.24681 -16.86798 -16.61182 -16.58827 -16.12128 -15.93421 -15.55888 -15.39596 -14.97193 -14.49500 -14.48274 -14.30897 -14.18215 -13.92325 -13.74620 -13.59558 -13.46043 -13.42703 -13.19203 -13.02920 -12.79640 -12.76444 -12.70785 -12.55463 -12.45834 -12.38377 -12.18982 -11.91298 -11.82003 -11.72201 -11.62184 -11.48119 -10.64580 -10.57801 -9.89275 -9.40335 -9.34814 -9.00758 -8.22449 -6.37507 0.42903 0.48440 1.35718 1.40010 1.47379 1.87006 2.28933 2.41872 2.42712 2.79524 3.00503 3.06713 3.73347 3.84498 3.94021 4.00284 4.04789 4.12721 4.29081 4.31776 4.38420 4.42140 4.43425 4.51168 4.54269 4.59836 4.63876 4.68641 4.75193 4.75914 4.76983 4.86272 4.90010 4.96357 4.98632 5.03049 5.09555 5.11946 5.18830 5.24012 5.33228 5.34876 5.46194 5.56445 5.67739 5.84962 5.85308 6.04883 6.06442 6.14632 6.49104 6.69745 6.81543 7.28253 7.50871 8.84229 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.024467 B = 0.001946 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.134540 B =14387.869773 C =14533.258017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.338 6.338 3 C 0.112 3.888 4 C -0.164 4.164 5 C -0.080 4.080 6 C -0.118 4.118 7 C 0.125 3.875 8 H 0.042 0.958 9 C -0.141 4.141 10 N -0.527 5.527 11 C 0.018 3.982 12 C 0.075 3.925 13 C -0.114 4.114 14 C 0.494 3.506 15 O -0.602 6.602 16 N -0.612 5.612 17 C 0.079 3.921 18 C 0.258 3.742 19 C -0.543 4.543 20 H 0.053 0.947 21 C 0.006 3.994 22 N -0.928 5.928 23 Si 0.968 3.032 24 H -0.259 1.259 25 H -0.278 1.278 26 H -0.278 1.278 27 C -0.055 4.055 28 C -0.211 4.211 29 H 0.063 0.937 30 H 0.117 0.883 31 H 0.063 0.937 32 H 0.135 0.865 33 H 0.137 0.863 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.052 0.948 37 H 0.078 0.922 38 H 0.017 0.983 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.018 0.982 42 H 0.109 0.891 43 H 0.121 0.879 44 H 0.071 0.929 45 H 0.064 0.936 46 H 0.095 0.905 47 H 0.023 0.977 48 H -0.003 1.003 49 H 0.267 0.733 50 H 0.138 0.862 51 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.677 -28.494 4.873 31.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.252 6.252 3 C 0.067 3.933 4 C -0.183 4.183 5 C -0.099 4.099 6 C -0.118 4.118 7 C 0.017 3.983 8 H 0.060 0.940 9 C -0.199 4.199 10 N -0.251 5.251 11 C -0.129 4.129 12 C -0.053 4.053 13 C -0.154 4.154 14 C 0.283 3.717 15 O -0.484 6.484 16 N -0.343 5.343 17 C -0.063 4.063 18 C 0.136 3.864 19 C -0.582 4.582 20 H 0.071 0.929 21 C -0.193 4.193 22 N -0.568 5.568 23 Si 0.792 3.208 24 H -0.184 1.184 25 H -0.203 1.203 26 H -0.204 1.204 27 C -0.073 4.073 28 C -0.230 4.230 29 H 0.082 0.918 30 H 0.135 0.865 31 H 0.082 0.918 32 H 0.153 0.847 33 H 0.155 0.845 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.096 0.904 38 H 0.035 0.965 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.037 0.963 42 H 0.127 0.873 43 H 0.140 0.860 44 H 0.089 0.911 45 H 0.082 0.918 46 H 0.113 0.887 47 H 0.041 0.959 48 H 0.015 0.985 49 H 0.076 0.924 50 H 0.156 0.844 51 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -12.495 -28.346 5.345 31.435 hybrid contribution 1.497 0.743 -0.931 1.913 sum -10.999 -27.603 4.414 30.040 Atomic orbital electron populations 1.23310 0.76605 1.05409 1.02191 1.86034 1.23345 1.27085 1.88767 1.19247 0.92673 0.84635 0.96751 1.20530 0.91735 0.98824 1.07206 1.20985 1.00401 0.90856 0.97641 1.19629 0.94201 0.93574 1.04423 1.20454 0.94397 0.89317 0.94089 0.94044 1.21884 1.02937 1.00604 0.94433 1.62047 1.51102 1.01659 1.10279 1.22520 1.00166 1.01182 0.89069 1.21715 0.94251 0.88391 1.00921 1.21555 1.00830 0.89051 1.03972 1.21405 0.85180 0.87517 0.77600 1.90632 1.23492 1.85490 1.48743 1.48204 1.20767 1.10344 1.54997 1.21931 0.82505 1.03559 0.98307 1.18747 0.92235 0.79747 0.95642 1.21677 1.28872 1.00250 1.07362 0.92901 1.25885 0.97816 0.95268 1.00360 1.70046 1.43292 1.05600 1.37825 0.85467 0.78718 0.77255 0.79364 1.18387 1.20299 1.20404 1.20942 0.93867 0.97454 0.95056 1.21458 1.00959 0.91845 1.08733 0.91827 0.86518 0.91835 0.84665 0.84538 0.91414 0.91186 0.92955 0.90353 0.96453 0.90172 0.90530 0.96333 0.87288 0.86048 0.91079 0.91755 0.88676 0.95899 0.98512 0.92404 0.84445 0.83780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.28 16 2 O -0.34 -5.64 10.50 -92.44 -0.97 -6.61 16 3 C 0.11 1.98 6.69 22.51 0.15 2.13 16 4 C -0.16 -2.88 9.99 22.37 0.22 -2.65 16 5 C -0.08 -1.38 9.66 22.26 0.22 -1.17 16 6 C -0.12 -2.14 3.77 -19.85 -0.07 -2.21 16 7 C 0.13 2.52 2.27 44.17 0.10 2.62 16 8 H 0.04 0.90 8.00 -2.39 -0.02 0.88 16 9 C -0.14 -2.76 8.96 71.98 0.65 -2.12 16 10 N -0.53 -11.16 3.97 -901.45 -3.58 -14.75 16 11 C 0.02 0.35 8.94 127.69 1.14 1.50 16 12 C 0.08 2.07 4.06 86.30 0.35 2.42 16 13 C -0.11 -3.11 4.18 29.85 0.12 -2.99 16 14 C 0.49 20.49 7.67 87.66 0.67 21.16 16 15 O -0.60 -31.45 15.56 -3.04 -0.05 -31.50 16 16 N -0.61 -26.08 2.86 -851.11 -2.43 -28.51 16 17 C 0.08 2.31 10.24 127.77 1.31 3.62 16 18 C 0.26 14.15 5.16 85.63 0.44 14.59 16 19 C -0.54 -31.72 9.39 25.60 0.24 -31.48 16 20 H 0.05 3.04 7.81 -2.92 -0.02 3.02 16 21 C 0.01 0.33 5.46 84.66 0.46 0.79 16 22 N -0.93 -56.76 13.29 21.45 0.28 -56.47 16 23 Si 0.97 45.30 29.54 68.60 2.03 47.33 16 24 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 25 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 26 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 27 C -0.05 -0.93 8.07 22.25 0.18 -0.75 16 28 C -0.21 -3.31 9.04 22.37 0.20 -3.11 16 29 H 0.06 0.44 7.66 -2.39 -0.02 0.43 16 30 H 0.12 0.53 8.14 -2.38 -0.02 0.51 16 31 H 0.06 0.44 7.66 -2.38 -0.02 0.42 16 32 H 0.14 2.05 8.06 -2.91 -0.02 2.03 16 33 H 0.14 1.96 8.03 -2.91 -0.02 1.94 16 34 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.05 1.17 6.20 -2.38 -0.01 1.15 16 37 H 0.08 1.38 6.12 -2.39 -0.01 1.37 16 38 H 0.02 0.36 8.14 -2.39 -0.02 0.34 16 39 H 0.08 1.38 6.30 -2.38 -0.02 1.36 16 40 H 0.08 2.29 5.78 -2.39 -0.01 2.28 16 41 H 0.02 0.60 8.08 -2.39 -0.02 0.58 16 42 H 0.11 2.50 5.73 -2.39 -0.01 2.49 16 43 H 0.12 2.68 8.11 -2.39 -0.02 2.67 16 44 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 45 H 0.06 2.00 8.07 -2.39 -0.02 1.98 16 46 H 0.09 2.06 6.44 -2.39 -0.02 2.05 16 47 H 0.02 1.27 8.07 -2.39 -0.02 1.25 16 48 H 0.00 -0.21 7.42 -2.39 -0.02 -0.22 16 49 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 50 H 0.14 2.24 7.72 -2.91 -0.02 2.22 16 51 H 0.14 1.62 6.30 -2.91 -0.02 1.60 16 Total: -1.00 -76.31 407.01 3.68 -72.63 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: 0.90 Total: 14.23 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: 7.50 Total: 3.65 kcal Atomic # 7 Polarization: -94.00 SS G_CDS: -5.73 Total: -99.73 kcal Atomic # 8 Polarization: -37.09 SS G_CDS: -1.02 Total: -38.11 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -76.31 3.68 -72.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092792521.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.483 kcal (2) G-P(sol) polarization free energy of solvation -76.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds