Wall clock time and date at job start Tue Mar 31 2020 19:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47156 * 2 1 4 4 C 1.50705 * 109.46952 * 119.99524 * 2 1 3 5 5 O 1.21279 * 119.99866 * 239.99800 * 4 2 1 6 6 N 1.34779 * 119.99609 * 60.00344 * 4 2 1 7 7 C 1.46499 * 119.99782 * 179.97438 * 6 4 2 8 8 C 1.52997 * 109.46975 * 179.97438 * 7 6 4 9 9 C 1.53004 * 109.46902 * 180.02562 * 8 7 6 10 10 N 1.46904 * 109.47204 * 180.02562 * 9 8 7 11 11 C 1.46892 * 111.00131 * 179.97438 * 10 9 8 12 12 H 1.09008 * 109.47114 * 324.99774 * 11 10 9 13 13 C 1.52997 * 109.47295 * 84.99918 * 11 10 9 14 14 C 1.50696 * 109.47167 * 204.99735 * 11 10 9 15 15 C 1.38300 * 119.93262 * 319.72911 * 14 11 10 16 16 C 1.38104 * 120.07247 * 179.72590 * 15 14 11 17 17 C 1.38880 * 119.92810 * 0.54158 * 16 15 14 18 18 O 1.35747 * 120.07174 * 179.75066 * 17 16 15 19 19 C 1.34825 * 117.00597 * 174.44425 * 18 17 16 20 20 H 1.08005 * 119.99735 * 5.05211 * 19 18 17 21 21 C 1.38651 * 120.00550 * 185.05478 * 19 18 17 22 22 N 1.31557 * 119.99702 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00148 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.46906 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46956 * 120.00407 * 23 21 19 26 26 H 1.48504 * 109.47096 * 240.00135 * 23 21 19 27 27 C 1.38882 * 119.86199 * 359.72799 * 17 16 15 28 28 C 1.38098 * 119.93192 * 0.02562 * 27 17 16 29 29 H 1.09000 * 109.47561 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47420 * 300.00559 * 1 2 3 31 31 H 1.09001 * 109.47077 * 60.00047 * 1 2 3 32 32 H 1.08997 * 109.47482 * 239.99932 * 2 1 3 33 33 H 1.09003 * 109.47611 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47089 * 299.99945 * 3 2 1 35 35 H 1.09000 * 109.47670 * 59.99900 * 3 2 1 36 36 H 0.96995 * 119.99950 * 0.02562 * 6 4 2 37 37 H 1.09000 * 109.47006 * 59.99445 * 7 6 4 38 38 H 1.09003 * 109.47300 * 299.99929 * 7 6 4 39 39 H 1.09002 * 109.47413 * 60.00361 * 8 7 6 40 40 H 1.08994 * 109.47047 * 299.99516 * 8 7 6 41 41 H 1.08995 * 109.47560 * 59.99725 * 9 8 7 42 42 H 1.09004 * 109.46743 * 299.99569 * 9 8 7 43 43 H 1.00903 * 110.99438 * 303.95610 * 10 9 8 44 44 H 1.08994 * 109.47650 * 59.99661 * 13 11 10 45 45 H 1.09004 * 109.47560 * 180.02562 * 13 11 10 46 46 H 1.08998 * 109.47148 * 299.99944 * 13 11 10 47 47 H 1.08005 * 119.96345 * 359.97438 * 15 14 11 48 48 H 1.08000 * 120.03674 * 180.27353 * 16 15 14 49 49 H 0.97001 * 120.00315 * 179.97438 * 22 21 19 50 50 H 1.07994 * 120.03671 * 179.97438 * 27 17 16 51 51 H 1.08000 * 119.97139 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.7295 -0.1209 2.0288 6 7 1.7066 -2.0007 1.4438 7 6 2.1954 -2.6914 2.6398 8 6 1.6848 -4.1337 2.6402 9 6 2.1947 -4.8548 3.8895 10 7 1.7050 -6.2399 3.8896 11 6 2.1763 -6.9648 5.0770 12 1 3.1785 -6.6237 5.3370 13 6 1.2274 -6.6986 6.2473 14 6 2.2092 -8.4425 4.7832 15 6 1.1896 -9.0234 4.0513 16 6 1.2197 -10.3763 3.7756 17 6 2.2695 -11.1557 4.2437 18 8 2.2994 -12.4867 3.9786 19 6 3.4011 -13.1627 4.3620 20 1 4.1726 -12.6615 4.9278 21 6 3.5439 -14.5013 4.0299 22 7 2.6045 -15.1116 3.3402 23 14 5.0707 -15.4375 4.5605 24 1 5.9693 -14.5302 5.3184 25 1 4.6761 -16.5785 5.4251 26 1 5.7802 -15.9484 3.3600 27 6 3.2891 -10.5704 4.9832 28 6 3.2558 -9.2161 5.2512 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 1.1494 -2.4722 0.8052 37 1 1.8325 -2.1776 3.5299 38 1 3.2854 -2.6915 2.6394 39 1 2.0474 -4.6478 1.7500 40 1 0.5948 -4.1332 2.6409 41 1 1.8318 -4.3407 4.7794 42 1 3.2847 -4.8553 3.8892 43 1 0.6984 -6.2674 3.8246 44 1 0.2253 -7.0396 5.9874 45 1 1.5774 -7.2362 7.1286 46 1 1.2036 -5.6298 6.4598 47 1 0.3710 -8.4176 3.6916 48 1 0.4254 -10.8285 3.2002 49 1 2.7044 -16.0480 3.1075 50 1 4.1066 -11.1739 5.3489 51 1 4.0486 -8.7602 5.8259 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182076729.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:26 Heat of formation + Delta-G solvation = -62.156303 kcal Electronic energy + Delta-G solvation = -27178.842520 eV Core-core repulsion = 23270.952492 eV Total energy + Delta-G solvation = -3907.890028 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.24787 -39.19606 -37.80025 -36.39092 -35.19773 -34.90364 -32.63555 -32.06552 -30.19243 -29.41602 -27.88232 -27.55811 -25.50189 -25.32311 -23.24048 -22.51265 -22.06585 -21.57454 -20.21522 -19.91997 -17.90715 -17.52887 -16.94134 -16.56894 -16.25964 -15.67706 -15.38675 -15.05389 -14.57389 -14.49943 -14.40971 -13.99900 -13.89688 -13.60392 -13.54191 -13.26260 -12.98212 -12.81456 -12.77954 -12.61477 -12.51474 -12.42789 -12.30849 -11.98373 -11.79368 -11.66007 -11.62596 -11.53519 -11.33773 -11.23604 -11.13369 -10.67950 -10.58659 -10.42990 -10.39550 -10.06757 -9.43567 -9.29357 -8.80678 -8.40774 -8.11964 -7.11605 -6.42622 -4.01294 2.26976 2.29938 2.36149 2.78936 3.13310 3.15018 3.20403 3.98583 4.05709 4.21648 4.39707 4.47761 4.58814 4.64457 4.79220 4.87502 4.95578 5.05855 5.11270 5.12592 5.21583 5.22709 5.27311 5.34796 5.36110 5.37152 5.42737 5.45215 5.51550 5.64959 5.68003 5.77130 5.78400 5.80885 5.82813 5.92615 5.98269 6.07337 6.14528 6.26199 6.45739 6.74729 6.86911 7.01828 7.10986 7.11304 7.33062 7.36474 7.45545 7.48894 7.86950 7.87303 8.02820 9.03440 9.74684 10.75690 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.021992 B = 0.001525 C = 0.001499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.866141 B =18361.138427 C =18669.129696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.116 4.116 3 C -0.133 4.133 4 C 0.514 3.486 5 O -0.541 6.541 6 N -0.730 5.730 7 C 0.119 3.881 8 C -0.129 4.129 9 C 0.062 3.938 10 N -0.679 5.679 11 C 0.142 3.858 12 H 0.076 0.924 13 C -0.176 4.176 14 C -0.167 4.167 15 C -0.053 4.053 16 C -0.194 4.194 17 C 0.153 3.847 18 O -0.181 6.181 19 C -0.390 4.390 20 H 0.092 0.908 21 C 0.038 3.962 22 N -0.864 5.864 23 Si 0.940 3.060 24 H -0.267 1.267 25 H -0.276 1.276 26 H -0.276 1.276 27 C -0.233 4.233 28 C -0.068 4.068 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.098 0.902 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.401 0.599 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.067 0.933 41 H 0.030 0.970 42 H 0.074 0.926 43 H 0.338 0.662 44 H 0.057 0.943 45 H 0.063 0.937 46 H 0.047 0.953 47 H 0.108 0.892 48 H 0.115 0.885 49 H 0.269 0.731 50 H 0.125 0.875 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.414 27.022 -3.811 27.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.137 4.137 3 C -0.191 4.191 4 C 0.300 3.700 5 O -0.417 6.417 6 N -0.382 5.382 7 C -0.005 4.005 8 C -0.168 4.168 9 C -0.067 4.067 10 N -0.309 5.309 11 C 0.032 3.968 12 H 0.094 0.906 13 C -0.235 4.235 14 C -0.169 4.169 15 C -0.072 4.072 16 C -0.214 4.214 17 C 0.100 3.900 18 O -0.084 6.084 19 C -0.467 4.467 20 H 0.109 0.891 21 C -0.165 4.165 22 N -0.499 5.499 23 Si 0.765 3.235 24 H -0.191 1.191 25 H -0.202 1.202 26 H -0.202 1.202 27 C -0.252 4.252 28 C -0.087 4.087 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.116 0.884 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.236 0.764 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.099 0.901 40 H 0.086 0.914 41 H 0.048 0.952 42 H 0.092 0.908 43 H 0.157 0.843 44 H 0.076 0.924 45 H 0.082 0.918 46 H 0.066 0.934 47 H 0.126 0.874 48 H 0.133 0.867 49 H 0.079 0.921 50 H 0.143 0.857 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -3.589 26.826 -3.820 27.333 hybrid contribution -0.008 -0.453 0.679 0.816 sum -3.598 26.372 -3.142 26.801 Atomic orbital electron populations 1.21796 0.92826 1.02544 1.03054 1.21321 0.97636 0.98174 0.96606 1.21615 1.01855 0.93487 1.02133 1.20746 0.79913 0.81608 0.87687 1.90707 1.37759 1.66103 1.47168 1.46045 1.54064 1.12269 1.25820 1.21315 0.99627 0.91944 0.87575 1.21759 1.01188 0.93609 1.00212 1.21836 1.00683 0.88665 0.95564 1.60584 1.16143 1.12648 1.41564 1.20181 0.97884 0.91449 0.87263 0.90621 1.22495 1.00542 1.00450 1.00008 1.19066 0.97964 0.93325 1.06522 1.20296 0.97199 0.93118 0.96584 1.20205 1.00327 0.93311 1.07520 1.19390 0.93273 0.85084 0.92302 1.83974 1.39863 1.14066 1.70523 1.21362 0.96995 0.93005 1.35318 0.89087 1.25273 0.98891 0.95959 0.96423 1.70048 1.32619 1.11462 1.35781 0.85660 0.79955 0.79403 0.78485 1.19136 1.20196 1.20167 1.21110 1.02067 0.95318 1.06720 1.20543 0.96597 0.93326 0.98207 0.92093 0.92032 0.91275 0.88436 0.91927 0.91988 0.91944 0.76433 0.91604 0.91298 0.90115 0.91423 0.95194 0.90751 0.84326 0.92363 0.91804 0.93407 0.87419 0.86739 0.92146 0.85689 0.87820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.59 9.09 37.16 0.34 -0.25 16 2 C -0.12 -0.66 3.26 -91.77 -0.30 -0.96 16 3 C -0.13 -0.83 8.48 37.16 0.32 -0.52 16 4 C 0.51 4.55 7.15 -10.98 -0.08 4.47 16 5 O -0.54 -7.09 15.98 5.56 0.09 -7.00 16 6 N -0.73 -5.02 5.45 -60.29 -0.33 -5.35 16 7 C 0.12 0.92 5.67 -4.04 -0.02 0.90 16 8 C -0.13 -0.91 5.59 -26.73 -0.15 -1.05 16 9 C 0.06 0.55 5.48 -3.82 -0.02 0.53 16 10 N -0.68 -7.43 5.71 -107.95 -0.62 -8.05 16 11 C 0.14 1.78 2.79 -68.87 -0.19 1.59 16 12 H 0.08 0.94 7.66 -51.92 -0.40 0.54 16 13 C -0.18 -1.93 9.14 37.16 0.34 -1.59 16 14 C -0.17 -2.77 4.96 -104.57 -0.52 -3.28 16 15 C -0.05 -0.93 9.31 -39.61 -0.37 -1.30 16 16 C -0.19 -4.10 9.99 -39.39 -0.39 -4.49 16 17 C 0.15 3.71 6.65 -39.11 -0.26 3.45 16 18 O -0.18 -5.19 9.76 0.07 0.00 -5.19 16 19 C -0.39 -10.98 9.49 30.89 0.29 -10.69 16 20 H 0.09 2.38 5.20 -52.48 -0.27 2.10 16 21 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 22 N -0.86 -25.44 13.67 55.48 0.76 -24.68 16 23 Si 0.94 20.63 29.55 -169.99 -5.02 15.61 16 24 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 25 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 26 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 27 C -0.23 -5.07 9.17 -39.39 -0.36 -5.43 16 28 C -0.07 -1.24 9.66 -39.61 -0.38 -1.62 16 29 H 0.06 0.19 7.57 -51.93 -0.39 -0.21 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.21 8.14 -51.93 -0.42 -0.22 16 32 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 34 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 36 H 0.40 1.76 7.89 -40.82 -0.32 1.44 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.03 0.25 7.44 -51.93 -0.39 -0.14 16 42 H 0.07 0.70 8.05 -51.93 -0.42 0.28 16 43 H 0.34 3.35 7.82 -39.29 -0.31 3.04 16 44 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 45 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 46 H 0.05 0.45 7.45 -51.93 -0.39 0.06 16 47 H 0.11 1.57 7.25 -52.48 -0.38 1.19 16 48 H 0.11 2.34 8.06 -52.49 -0.42 1.92 16 49 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 50 H 0.13 2.74 5.64 -52.49 -0.30 2.45 16 51 H 0.10 1.61 8.03 -52.49 -0.42 1.19 16 LS Contribution 416.79 15.07 6.28 6.28 Total: -1.00 -33.28 416.79 -9.31 -42.59 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -8.61 Total: 5.10 kcal Atomic # 6 Polarization: -17.44 SS G_CDS: -1.86 Total: -19.30 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: -0.19 Total: -38.09 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.09 Total: -12.19 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -33.28 -9.31 -42.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182076729.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.571 kcal (2) G-P(sol) polarization free energy of solvation -33.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds