Wall clock time and date at job start Tue Mar 31 2020 19:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47156 * 2 1 4 4 C 1.50705 * 109.46952 * 119.99524 * 2 1 3 5 5 O 1.21279 * 119.99866 * 239.99800 * 4 2 1 6 6 N 1.34779 * 119.99609 * 60.00344 * 4 2 1 7 7 C 1.46499 * 119.99782 * 179.97438 * 6 4 2 8 8 C 1.52997 * 109.46975 * 179.97438 * 7 6 4 9 9 C 1.53004 * 109.46902 * 180.02562 * 8 7 6 10 10 N 1.46904 * 109.47204 * 180.02562 * 9 8 7 11 11 C 1.46892 * 111.00131 * 179.97438 * 10 9 8 12 12 H 1.09008 * 109.47114 * 324.99774 * 11 10 9 13 13 C 1.52997 * 109.47295 * 84.99918 * 11 10 9 14 14 C 1.50696 * 109.47167 * 204.99735 * 11 10 9 15 15 C 1.38300 * 119.93262 * 319.72911 * 14 11 10 16 16 C 1.38104 * 120.07247 * 179.72590 * 15 14 11 17 17 C 1.38880 * 119.92810 * 0.54158 * 16 15 14 18 18 O 1.35747 * 120.07174 * 179.75066 * 17 16 15 19 19 C 1.34825 * 117.00597 * 174.44425 * 18 17 16 20 20 H 1.08005 * 119.99735 * 5.05211 * 19 18 17 21 21 C 1.38651 * 120.00550 * 185.05478 * 19 18 17 22 22 N 1.31557 * 119.99702 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00148 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.46906 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46956 * 120.00407 * 23 21 19 26 26 H 1.48504 * 109.47096 * 240.00135 * 23 21 19 27 27 C 1.38882 * 119.86199 * 359.72799 * 17 16 15 28 28 C 1.38098 * 119.93192 * 0.02562 * 27 17 16 29 29 H 1.09000 * 109.47561 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47420 * 300.00559 * 1 2 3 31 31 H 1.09001 * 109.47077 * 60.00047 * 1 2 3 32 32 H 1.08997 * 109.47482 * 239.99932 * 2 1 3 33 33 H 1.09003 * 109.47611 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47089 * 299.99945 * 3 2 1 35 35 H 1.09000 * 109.47670 * 59.99900 * 3 2 1 36 36 H 0.96995 * 119.99950 * 0.02562 * 6 4 2 37 37 H 1.09000 * 109.47006 * 59.99445 * 7 6 4 38 38 H 1.09003 * 109.47300 * 299.99929 * 7 6 4 39 39 H 1.09002 * 109.47413 * 60.00361 * 8 7 6 40 40 H 1.08994 * 109.47047 * 299.99516 * 8 7 6 41 41 H 1.08995 * 109.47560 * 59.99725 * 9 8 7 42 42 H 1.09004 * 109.46743 * 299.99569 * 9 8 7 43 43 H 1.00903 * 110.99438 * 303.95610 * 10 9 8 44 44 H 1.08994 * 109.47650 * 59.99661 * 13 11 10 45 45 H 1.09004 * 109.47560 * 180.02562 * 13 11 10 46 46 H 1.08998 * 109.47148 * 299.99944 * 13 11 10 47 47 H 1.08005 * 119.96345 * 359.97438 * 15 14 11 48 48 H 1.08000 * 120.03674 * 180.27353 * 16 15 14 49 49 H 0.97001 * 120.00315 * 179.97438 * 22 21 19 50 50 H 1.07994 * 120.03671 * 179.97438 * 27 17 16 51 51 H 1.08000 * 119.97139 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.7295 -0.1209 2.0288 6 7 1.7066 -2.0007 1.4438 7 6 2.1954 -2.6914 2.6398 8 6 1.6848 -4.1337 2.6402 9 6 2.1947 -4.8548 3.8895 10 7 1.7050 -6.2399 3.8896 11 6 2.1763 -6.9648 5.0770 12 1 3.1785 -6.6237 5.3370 13 6 1.2274 -6.6986 6.2473 14 6 2.2092 -8.4425 4.7832 15 6 1.1896 -9.0234 4.0513 16 6 1.2197 -10.3763 3.7756 17 6 2.2695 -11.1557 4.2437 18 8 2.2994 -12.4867 3.9786 19 6 3.4011 -13.1627 4.3620 20 1 4.1726 -12.6615 4.9278 21 6 3.5439 -14.5013 4.0299 22 7 2.6045 -15.1116 3.3402 23 14 5.0707 -15.4375 4.5605 24 1 5.9693 -14.5302 5.3184 25 1 4.6761 -16.5785 5.4251 26 1 5.7802 -15.9484 3.3600 27 6 3.2891 -10.5704 4.9832 28 6 3.2558 -9.2161 5.2512 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 1.1494 -2.4722 0.8052 37 1 1.8325 -2.1776 3.5299 38 1 3.2854 -2.6915 2.6394 39 1 2.0474 -4.6478 1.7500 40 1 0.5948 -4.1332 2.6409 41 1 1.8318 -4.3407 4.7794 42 1 3.2847 -4.8553 3.8892 43 1 0.6984 -6.2674 3.8246 44 1 0.2253 -7.0396 5.9874 45 1 1.5774 -7.2362 7.1286 46 1 1.2036 -5.6298 6.4598 47 1 0.3710 -8.4176 3.6916 48 1 0.4254 -10.8285 3.2002 49 1 2.7044 -16.0480 3.1075 50 1 4.1066 -11.1739 5.3489 51 1 4.0486 -8.7602 5.8259 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182076729.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:25 Heat of formation + Delta-G solvation = -84.582795 kcal Electronic energy + Delta-G solvation = -27179.815006 eV Core-core repulsion = 23270.952492 eV Total energy + Delta-G solvation = -3908.862514 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.92830 -40.80898 -39.12992 -37.53678 -36.16650 -35.44087 -34.29596 -33.27245 -31.77418 -30.45470 -29.15504 -27.96540 -27.34038 -26.14518 -24.09831 -23.81654 -23.16633 -22.50179 -21.43224 -20.71752 -19.72863 -18.79998 -18.09828 -17.32563 -16.89874 -16.67882 -16.45592 -16.20350 -16.13944 -15.58842 -15.48798 -15.32801 -15.04805 -14.94099 -14.47900 -14.39125 -14.03674 -13.97124 -13.80298 -13.52221 -13.49749 -13.23962 -13.15246 -13.07753 -12.90001 -12.80915 -12.49903 -12.43176 -12.26923 -12.10905 -12.05518 -12.02906 -11.96568 -11.82235 -11.66644 -11.12812 -10.78287 -10.75892 -10.09840 -9.71643 -9.27188 -8.82370 -8.45469 -6.13174 0.65945 0.76547 1.35219 1.43586 1.53399 1.63768 2.18664 2.20559 2.84325 3.14832 3.33017 3.56912 3.71876 3.97142 3.99128 4.04031 4.07937 4.11842 4.19753 4.20564 4.26804 4.41132 4.42737 4.50407 4.56617 4.65000 4.72935 4.75598 4.76577 4.80909 4.90336 4.91404 4.93630 4.95653 5.08689 5.14520 5.17186 5.22066 5.24663 5.30378 5.32243 5.33003 5.34597 5.48025 5.63888 5.76103 5.82863 6.05896 6.20076 6.30468 6.54556 6.58548 6.99689 7.25992 7.82221 8.78185 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.021992 B = 0.001525 C = 0.001499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.866141 B =18361.138427 C =18669.129696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.111 4.111 3 C -0.134 4.134 4 C 0.507 3.493 5 O -0.591 6.591 6 N -0.718 5.718 7 C 0.123 3.877 8 C -0.115 4.115 9 C 0.064 3.936 10 N -0.688 5.688 11 C 0.145 3.855 12 H 0.084 0.916 13 C -0.171 4.171 14 C -0.141 4.141 15 C -0.045 4.045 16 C -0.206 4.206 17 C 0.108 3.892 18 O -0.236 6.236 19 C -0.412 4.412 20 H 0.100 0.900 21 C -0.024 4.024 22 N -0.921 5.921 23 Si 1.018 2.982 24 H -0.253 1.253 25 H -0.268 1.268 26 H -0.269 1.269 27 C -0.243 4.243 28 C -0.070 4.070 29 H 0.074 0.926 30 H 0.049 0.951 31 H 0.084 0.916 32 H 0.119 0.881 33 H 0.045 0.955 34 H 0.084 0.916 35 H 0.045 0.955 36 H 0.416 0.584 37 H 0.059 0.941 38 H 0.054 0.946 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.041 0.959 42 H 0.067 0.933 43 H 0.347 0.653 44 H 0.059 0.941 45 H 0.057 0.943 46 H 0.069 0.931 47 H 0.145 0.855 48 H 0.110 0.890 49 H 0.272 0.728 50 H 0.115 0.885 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.627 29.695 -3.746 30.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.133 4.133 3 C -0.192 4.192 4 C 0.295 3.705 5 O -0.472 6.472 6 N -0.371 5.371 7 C -0.002 4.002 8 C -0.153 4.153 9 C -0.065 4.065 10 N -0.320 5.320 11 C 0.035 3.965 12 H 0.102 0.898 13 C -0.230 4.230 14 C -0.143 4.143 15 C -0.063 4.063 16 C -0.225 4.225 17 C 0.058 3.942 18 O -0.143 6.143 19 C -0.488 4.488 20 H 0.117 0.883 21 C -0.221 4.221 22 N -0.560 5.560 23 Si 0.837 3.163 24 H -0.176 1.176 25 H -0.193 1.193 26 H -0.194 1.194 27 C -0.262 4.262 28 C -0.089 4.089 29 H 0.093 0.907 30 H 0.068 0.932 31 H 0.103 0.897 32 H 0.137 0.863 33 H 0.065 0.935 34 H 0.103 0.897 35 H 0.065 0.935 36 H 0.253 0.747 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.095 0.905 40 H 0.102 0.898 41 H 0.059 0.941 42 H 0.085 0.915 43 H 0.167 0.833 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.088 0.912 47 H 0.162 0.838 48 H 0.128 0.872 49 H 0.081 0.919 50 H 0.133 0.867 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.838 29.543 -3.763 30.028 hybrid contribution -0.041 -0.901 0.677 1.127 sum -3.879 28.642 -3.087 29.068 Atomic orbital electron populations 1.21799 0.91226 1.03551 1.03283 1.21372 0.98811 0.97410 0.95658 1.21625 1.00850 0.94237 1.02438 1.21382 0.79092 0.81933 0.88070 1.90684 1.40140 1.67267 1.49066 1.45972 1.53536 1.11805 1.25751 1.21209 0.98784 0.92462 0.87699 1.21604 1.01990 0.92473 0.99236 1.21838 1.00322 0.87554 0.96819 1.60463 1.16943 1.13950 1.40611 1.20132 0.99214 0.88501 0.88622 0.89809 1.22427 0.99902 1.01929 0.98731 1.19665 0.95904 0.95779 1.02906 1.20680 0.98355 0.91644 0.95634 1.20478 0.99559 0.94821 1.07625 1.19948 0.95461 0.84377 0.94365 1.83933 1.40886 1.16314 1.73173 1.21835 0.97453 0.93771 1.35740 0.88301 1.26560 1.02529 0.96655 0.96326 1.70191 1.35397 1.12027 1.38392 0.84539 0.75505 0.77834 0.78382 1.17591 1.19299 1.19361 1.21199 1.01281 0.96968 1.06754 1.20917 0.98021 0.91858 0.98066 0.90709 0.93190 0.89678 0.86322 0.93539 0.89720 0.93545 0.74702 0.92289 0.92796 0.90453 0.89829 0.94063 0.91476 0.83318 0.92166 0.92394 0.91199 0.83752 0.87160 0.91923 0.86747 0.84591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.78 9.09 71.98 0.65 -0.12 16 2 C -0.11 -1.06 3.26 -11.54 -0.04 -1.10 16 3 C -0.13 -1.56 8.48 71.98 0.61 -0.95 16 4 C 0.51 8.43 7.15 87.66 0.63 9.06 16 5 O -0.59 -15.61 15.98 -3.03 -0.05 -15.65 16 6 N -0.72 -8.42 5.45 -463.06 -2.52 -10.95 16 7 C 0.12 1.66 5.67 86.38 0.49 2.15 16 8 C -0.11 -1.23 5.59 30.59 0.17 -1.06 16 9 C 0.06 0.89 5.48 86.30 0.47 1.36 16 10 N -0.69 -12.19 5.71 -495.45 -2.83 -15.02 16 11 C 0.15 3.04 2.79 44.17 0.12 3.17 16 12 H 0.08 1.71 7.66 -2.38 -0.02 1.69 16 13 C -0.17 -3.02 9.14 71.98 0.66 -2.36 16 14 C -0.14 -4.25 4.96 -19.83 -0.10 -4.35 16 15 C -0.04 -1.47 9.31 22.25 0.21 -1.26 16 16 C -0.21 -8.78 9.99 22.39 0.22 -8.56 16 17 C 0.11 5.48 6.65 22.58 0.15 5.63 16 18 O -0.24 -14.47 9.76 -22.65 -0.22 -14.69 16 19 C -0.41 -24.39 9.49 67.92 0.64 -23.75 16 20 H 0.10 5.41 5.20 -2.91 -0.02 5.40 16 21 C -0.02 -1.36 5.49 84.83 0.47 -0.89 16 22 N -0.92 -57.15 13.67 21.61 0.30 -56.86 16 23 Si 1.02 43.44 29.55 68.60 2.03 45.47 16 24 H -0.25 -9.98 7.11 99.48 0.71 -9.28 16 25 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 26 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 27 C -0.24 -10.73 9.17 22.39 0.21 -10.53 16 28 C -0.07 -2.42 9.66 22.25 0.21 -2.20 16 29 H 0.07 0.21 7.57 -2.39 -0.02 0.19 16 30 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.08 0.24 8.14 -2.39 -0.02 0.22 16 32 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.05 0.68 8.10 -2.39 -0.02 0.66 16 34 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.05 0.68 8.10 -2.39 -0.02 0.66 16 36 H 0.42 2.39 7.89 -92.71 -0.73 1.66 16 37 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.05 0.90 8.14 -2.39 -0.02 0.89 16 39 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.04 0.51 7.44 -2.39 -0.02 0.49 16 42 H 0.07 1.06 8.05 -2.39 -0.02 1.04 16 43 H 0.35 5.21 7.82 -89.69 -0.70 4.51 16 44 H 0.06 1.06 8.13 -2.39 -0.02 1.04 16 45 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 46 H 0.07 0.98 7.45 -2.39 -0.02 0.96 16 47 H 0.14 3.65 7.25 -2.91 -0.02 3.63 16 48 H 0.11 4.68 8.06 -2.91 -0.02 4.66 16 49 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 50 H 0.11 5.19 5.64 -2.91 -0.02 5.18 16 51 H 0.14 3.79 8.03 -2.91 -0.02 3.77 16 Total: -1.00 -78.89 416.79 1.98 -76.91 By element: Atomic # 1 Polarization: 27.07 SS G_CDS: -0.51 Total: 26.56 kcal Atomic # 6 Polarization: -41.55 SS G_CDS: 5.78 Total: -35.77 kcal Atomic # 7 Polarization: -77.77 SS G_CDS: -5.06 Total: -82.83 kcal Atomic # 8 Polarization: -30.07 SS G_CDS: -0.27 Total: -30.34 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -78.89 1.98 -76.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182076729.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.673 kcal (2) G-P(sol) polarization free energy of solvation -78.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds