Wall clock time and date at job start Tue Mar 31 2020 19:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47287 * 2 1 4 4 C 1.50697 * 109.47271 * 120.00409 * 2 1 3 5 5 O 1.21284 * 119.99879 * 359.97438 * 4 2 1 6 6 N 1.34771 * 120.00415 * 179.97438 * 4 2 1 7 7 C 1.46504 * 120.00328 * 179.97438 * 6 4 2 8 8 C 1.52997 * 109.47062 * 179.97438 * 7 6 4 9 9 C 1.53004 * 109.46931 * 179.97438 * 8 7 6 10 10 N 1.46901 * 109.46820 * 180.02562 * 9 8 7 11 11 C 1.46903 * 110.99623 * 180.02562 * 10 9 8 12 12 H 1.08997 * 109.47148 * 34.99954 * 11 10 9 13 13 C 1.53002 * 109.47101 * 274.99787 * 11 10 9 14 14 C 1.50704 * 109.47151 * 155.00233 * 11 10 9 15 15 C 1.38299 * 119.93072 * 39.72221 * 14 11 10 16 16 C 1.38099 * 120.06809 * 179.72372 * 15 14 11 17 17 C 1.38876 * 119.92991 * 0.55702 * 16 15 14 18 18 O 1.35750 * 120.06959 * 179.74905 * 17 16 15 19 19 C 1.34827 * 117.00104 * 174.43819 * 18 17 16 20 20 H 1.07994 * 120.00121 * 5.05448 * 19 18 17 21 21 C 1.38654 * 119.99939 * 185.05211 * 19 18 17 22 22 N 1.31560 * 120.00052 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99963 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.47656 * 90.00041 * 23 21 19 25 25 H 1.48507 * 109.47218 * 210.00281 * 23 21 19 26 26 H 1.48508 * 109.47250 * 329.99484 * 23 21 19 27 27 C 1.38875 * 119.86408 * 359.71864 * 17 16 15 28 28 C 1.38105 * 119.92901 * 0.02562 * 27 17 16 29 29 H 1.09004 * 109.46702 * 300.00135 * 1 2 3 30 30 H 1.09001 * 109.46904 * 59.99657 * 1 2 3 31 31 H 1.08995 * 109.47304 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47172 * 240.00400 * 2 1 3 33 33 H 1.08996 * 109.47108 * 300.00360 * 3 2 1 34 34 H 1.08996 * 109.46612 * 60.00644 * 3 2 1 35 35 H 1.09007 * 109.46758 * 179.97438 * 3 2 1 36 36 H 0.96998 * 119.99987 * 0.02562 * 6 4 2 37 37 H 1.09002 * 109.46783 * 60.00295 * 7 6 4 38 38 H 1.08995 * 109.47016 * 299.99944 * 7 6 4 39 39 H 1.09009 * 109.47174 * 60.00241 * 8 7 6 40 40 H 1.08998 * 109.47540 * 300.00351 * 8 7 6 41 41 H 1.09002 * 109.46710 * 60.00553 * 9 8 7 42 42 H 1.08995 * 109.47220 * 300.00122 * 9 8 7 43 43 H 1.00896 * 111.00470 * 56.05131 * 10 9 8 44 44 H 1.09000 * 109.46874 * 60.00073 * 13 11 10 45 45 H 1.08998 * 109.46932 * 179.97438 * 13 11 10 46 46 H 1.08997 * 109.47255 * 300.00101 * 13 11 10 47 47 H 1.08005 * 119.96654 * 0.02562 * 15 14 11 48 48 H 1.08000 * 120.03259 * 180.26925 * 16 15 14 49 49 H 0.97005 * 119.99499 * 180.02562 * 22 21 19 50 50 H 1.07999 * 120.04137 * 179.97438 * 27 17 16 51 51 H 1.07994 * 119.96237 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 1.2442 -1.1711 2.0289 6 7 3.3573 -0.8341 1.4434 7 6 3.8457 -1.5243 2.6399 8 6 5.3757 -1.5255 2.6391 9 6 5.8857 -2.2458 3.8890 10 7 7.3547 -2.2464 3.8885 11 6 7.8811 -2.9318 5.0765 12 1 7.2251 -3.7622 5.3374 13 6 7.9473 -1.9473 6.2458 14 6 9.2630 -3.4563 4.7827 15 6 10.1468 -2.6945 4.0402 16 6 11.4158 -3.1699 3.7742 17 6 11.8002 -4.4193 4.2433 18 8 13.0452 -4.8916 3.9791 19 6 13.3934 -6.0577 4.5594 20 1 12.6672 -6.6127 5.1346 21 6 14.6840 -6.5443 4.4177 22 7 15.5685 -5.8685 3.7165 23 14 15.1663 -8.1603 5.2210 24 1 14.9071 -9.2784 4.2789 25 1 16.6100 -8.1294 5.5675 26 1 14.3652 -8.3577 6.4559 27 6 10.9085 -5.1843 4.9838 28 6 9.6426 -4.7010 5.2509 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6767 1.9564 -0.8899 34 1 1.6768 1.9562 0.8900 35 1 3.1301 1.4424 0.0005 36 1 3.9877 -0.4654 0.8050 37 1 3.4819 -2.5519 2.6404 38 1 3.4828 -1.0099 3.5296 39 1 5.7399 -0.4981 2.6383 40 1 5.7382 -2.0402 1.7493 41 1 5.5215 -3.2732 3.8902 42 1 5.5232 -1.7308 4.7785 43 1 7.7167 -1.3070 3.8227 44 1 6.9477 -1.5679 6.4583 45 1 8.3374 -2.4559 7.1274 46 1 8.6032 -1.1168 5.9850 47 1 9.8459 -1.7247 3.6722 48 1 12.1070 -2.5727 3.1980 49 1 16.4713 -6.2093 3.6171 50 1 11.2042 -6.1564 5.3496 51 1 8.9489 -5.2953 5.8271 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182076747.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:30 Heat of formation + Delta-G solvation = -62.055953 kcal Electronic energy + Delta-G solvation = -27168.971013 eV Core-core repulsion = 23261.085336 eV Total energy + Delta-G solvation = -3907.885677 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.24984 -39.19560 -37.80027 -36.39128 -35.19822 -34.90500 -32.63560 -32.06540 -30.19263 -29.41457 -27.88379 -27.56007 -25.50202 -25.32285 -23.24176 -22.51106 -22.06737 -21.57432 -20.21624 -19.91926 -17.90555 -17.53115 -16.94092 -16.57077 -16.26103 -15.67837 -15.38789 -15.05105 -14.57541 -14.49952 -14.41287 -13.99663 -13.89967 -13.61180 -13.54446 -13.26416 -12.96529 -12.82774 -12.78522 -12.61351 -12.51643 -12.41731 -12.29567 -11.98758 -11.79472 -11.66019 -11.62829 -11.53731 -11.33645 -11.23685 -11.12589 -10.69355 -10.59525 -10.42927 -10.39246 -10.06975 -9.43816 -9.29742 -8.80244 -8.41036 -8.11848 -7.11602 -6.42500 -4.01241 2.27096 2.29724 2.36380 2.78707 3.13935 3.14775 3.19482 3.98625 4.05568 4.21475 4.39471 4.47534 4.58839 4.64192 4.79039 4.87267 4.95374 5.04648 5.12421 5.13637 5.21592 5.22561 5.28425 5.33545 5.35307 5.36963 5.42911 5.45003 5.51382 5.64802 5.68195 5.77184 5.78359 5.80772 5.82676 5.92631 5.98410 6.07091 6.15066 6.26283 6.45784 6.74869 6.86847 7.01771 7.10773 7.11081 7.33021 7.36317 7.45671 7.48944 7.86759 7.87409 8.02810 9.03432 9.74654 10.75704 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.024809 B = 0.001501 C = 0.001481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.345309 B =18647.218589 C =18904.330701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.116 4.116 3 C -0.145 4.145 4 C 0.514 3.486 5 O -0.541 6.541 6 N -0.730 5.730 7 C 0.119 3.881 8 C -0.129 4.129 9 C 0.063 3.937 10 N -0.679 5.679 11 C 0.142 3.858 12 H 0.075 0.925 13 C -0.176 4.176 14 C -0.168 4.168 15 C -0.053 4.053 16 C -0.195 4.195 17 C 0.153 3.847 18 O -0.180 6.180 19 C -0.391 4.391 20 H 0.091 0.909 21 C 0.039 3.961 22 N -0.864 5.864 23 Si 0.940 3.060 24 H -0.273 1.273 25 H -0.278 1.278 26 H -0.268 1.268 27 C -0.233 4.233 28 C -0.068 4.068 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.098 0.902 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.401 0.599 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.030 0.970 43 H 0.338 0.662 44 H 0.047 0.953 45 H 0.063 0.937 46 H 0.057 0.943 47 H 0.108 0.892 48 H 0.114 0.886 49 H 0.269 0.731 50 H 0.125 0.875 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.196 12.915 -4.353 27.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.137 4.137 3 C -0.202 4.202 4 C 0.300 3.700 5 O -0.417 6.417 6 N -0.382 5.382 7 C -0.005 4.005 8 C -0.168 4.168 9 C -0.067 4.067 10 N -0.310 5.310 11 C 0.032 3.968 12 H 0.094 0.906 13 C -0.235 4.235 14 C -0.169 4.169 15 C -0.072 4.072 16 C -0.214 4.214 17 C 0.100 3.900 18 O -0.084 6.084 19 C -0.467 4.467 20 H 0.109 0.891 21 C -0.165 4.165 22 N -0.499 5.499 23 Si 0.765 3.235 24 H -0.199 1.199 25 H -0.203 1.203 26 H -0.192 1.192 27 C -0.252 4.252 28 C -0.087 4.087 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.116 0.884 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.236 0.764 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.099 0.901 41 H 0.093 0.907 42 H 0.048 0.952 43 H 0.157 0.843 44 H 0.066 0.934 45 H 0.082 0.918 46 H 0.076 0.924 47 H 0.126 0.874 48 H 0.133 0.867 49 H 0.079 0.921 50 H 0.143 0.857 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -24.282 12.071 -4.367 27.466 hybrid contribution 0.477 -0.080 0.815 0.948 sum -23.805 11.990 -3.551 26.890 Atomic orbital electron populations 1.21615 0.92434 1.02903 1.02134 1.21321 0.98494 0.97315 0.96605 1.21798 1.01209 0.94158 1.03055 1.20744 0.82088 0.79435 0.87691 1.90709 1.55356 1.48528 1.47149 1.46044 1.07228 1.59111 1.25811 1.21316 0.93935 0.97649 0.87562 1.21761 0.93302 1.01500 1.00203 1.21835 0.88714 1.00635 0.95563 1.60585 1.05938 1.22901 1.41531 1.20184 0.93809 0.95515 0.87268 0.90630 1.22494 1.00776 1.00206 1.00016 1.19067 0.94992 0.96515 1.06332 1.20294 0.92044 0.98297 0.96537 1.20205 0.97454 0.95577 1.08152 1.19390 0.86242 0.92133 0.92281 1.83976 1.25016 1.37566 1.61833 1.21312 0.96862 0.96498 1.32067 0.89143 1.25271 0.94590 0.99566 0.97093 1.70044 1.04381 1.38021 1.37465 0.85729 0.78258 0.80313 0.79222 1.19916 1.20286 1.19242 1.21108 0.94831 1.02215 1.07074 1.20540 0.95380 0.94524 0.98219 0.91937 0.91994 0.91929 0.88440 0.91266 0.92038 0.92095 0.76435 0.91299 0.91599 0.91424 0.90120 0.90747 0.95194 0.84318 0.93413 0.91796 0.92357 0.87402 0.86742 0.92099 0.85696 0.87822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.83 8.48 37.16 0.32 -0.52 16 2 C -0.12 -0.66 3.26 -91.77 -0.30 -0.96 16 3 C -0.14 -0.58 9.09 37.16 0.34 -0.25 16 4 C 0.51 4.53 7.15 -10.99 -0.08 4.45 16 5 O -0.54 -7.07 15.98 5.55 0.09 -6.98 16 6 N -0.73 -5.00 5.45 -60.30 -0.33 -5.32 16 7 C 0.12 0.91 5.67 -4.04 -0.02 0.89 16 8 C -0.13 -0.90 5.59 -26.73 -0.15 -1.05 16 9 C 0.06 0.54 5.48 -3.82 -0.02 0.52 16 10 N -0.68 -7.41 5.69 -107.95 -0.61 -8.03 16 11 C 0.14 1.78 2.79 -68.86 -0.19 1.59 16 12 H 0.08 0.94 7.66 -51.93 -0.40 0.54 16 13 C -0.18 -1.94 9.14 37.16 0.34 -1.60 16 14 C -0.17 -2.77 4.96 -104.58 -0.52 -3.29 16 15 C -0.05 -0.93 9.32 -39.61 -0.37 -1.30 16 16 C -0.19 -4.10 9.99 -39.40 -0.39 -4.50 16 17 C 0.15 3.71 6.65 -39.11 -0.26 3.45 16 18 O -0.18 -5.19 9.76 0.05 0.00 -5.19 16 19 C -0.39 -11.00 9.49 30.89 0.29 -10.70 16 20 H 0.09 2.36 5.20 -52.49 -0.27 2.08 16 21 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 22 N -0.86 -25.43 13.67 55.48 0.76 -24.68 16 23 Si 0.94 20.61 29.55 -169.99 -5.02 15.58 16 24 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 25 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 26 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 27 C -0.23 -5.07 9.17 -39.39 -0.36 -5.43 16 28 C -0.07 -1.24 9.66 -39.61 -0.38 -1.62 16 29 H 0.06 0.45 8.10 -51.93 -0.42 0.03 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 32 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.21 8.14 -51.93 -0.42 -0.22 16 34 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.06 0.19 7.56 -51.93 -0.39 -0.21 16 36 H 0.40 1.74 7.89 -40.82 -0.32 1.42 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 40 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.70 8.06 -51.93 -0.42 0.28 16 42 H 0.03 0.25 7.43 -51.93 -0.39 -0.14 16 43 H 0.34 3.34 7.81 -39.29 -0.31 3.04 16 44 H 0.05 0.45 7.45 -51.93 -0.39 0.06 16 45 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.06 0.65 8.13 -51.93 -0.42 0.22 16 47 H 0.11 1.57 7.23 -52.48 -0.38 1.20 16 48 H 0.11 2.34 8.06 -52.49 -0.42 1.92 16 49 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 50 H 0.13 2.74 5.64 -52.49 -0.30 2.44 16 51 H 0.10 1.61 8.03 -52.49 -0.42 1.19 16 LS Contribution 416.76 15.07 6.28 6.28 Total: -1.00 -33.25 416.76 -9.30 -42.55 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -8.61 Total: 5.10 kcal Atomic # 6 Polarization: -17.47 SS G_CDS: -1.86 Total: -19.33 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: -0.18 Total: -38.03 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: 0.09 Total: -12.17 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -33.25 -9.30 -42.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182076747.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.502 kcal (2) G-P(sol) polarization free energy of solvation -33.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds