Wall clock time and date at job start Tue Mar 31 2020 19:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47287 * 2 1 4 4 C 1.50697 * 109.47271 * 120.00409 * 2 1 3 5 5 O 1.21284 * 119.99879 * 359.97438 * 4 2 1 6 6 N 1.34771 * 120.00415 * 179.97438 * 4 2 1 7 7 C 1.46504 * 120.00328 * 179.97438 * 6 4 2 8 8 C 1.52997 * 109.47062 * 179.97438 * 7 6 4 9 9 C 1.53004 * 109.46931 * 179.97438 * 8 7 6 10 10 N 1.46901 * 109.46820 * 180.02562 * 9 8 7 11 11 C 1.46903 * 110.99623 * 180.02562 * 10 9 8 12 12 H 1.08997 * 109.47148 * 34.99954 * 11 10 9 13 13 C 1.53002 * 109.47101 * 274.99787 * 11 10 9 14 14 C 1.50704 * 109.47151 * 155.00233 * 11 10 9 15 15 C 1.38299 * 119.93072 * 39.72221 * 14 11 10 16 16 C 1.38099 * 120.06809 * 179.72372 * 15 14 11 17 17 C 1.38876 * 119.92991 * 0.55702 * 16 15 14 18 18 O 1.35750 * 120.06959 * 179.74905 * 17 16 15 19 19 C 1.34827 * 117.00104 * 174.43819 * 18 17 16 20 20 H 1.07994 * 120.00121 * 5.05448 * 19 18 17 21 21 C 1.38654 * 119.99939 * 185.05211 * 19 18 17 22 22 N 1.31560 * 120.00052 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99963 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.47656 * 90.00041 * 23 21 19 25 25 H 1.48507 * 109.47218 * 210.00281 * 23 21 19 26 26 H 1.48508 * 109.47250 * 329.99484 * 23 21 19 27 27 C 1.38875 * 119.86408 * 359.71864 * 17 16 15 28 28 C 1.38105 * 119.92901 * 0.02562 * 27 17 16 29 29 H 1.09004 * 109.46702 * 300.00135 * 1 2 3 30 30 H 1.09001 * 109.46904 * 59.99657 * 1 2 3 31 31 H 1.08995 * 109.47304 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47172 * 240.00400 * 2 1 3 33 33 H 1.08996 * 109.47108 * 300.00360 * 3 2 1 34 34 H 1.08996 * 109.46612 * 60.00644 * 3 2 1 35 35 H 1.09007 * 109.46758 * 179.97438 * 3 2 1 36 36 H 0.96998 * 119.99987 * 0.02562 * 6 4 2 37 37 H 1.09002 * 109.46783 * 60.00295 * 7 6 4 38 38 H 1.08995 * 109.47016 * 299.99944 * 7 6 4 39 39 H 1.09009 * 109.47174 * 60.00241 * 8 7 6 40 40 H 1.08998 * 109.47540 * 300.00351 * 8 7 6 41 41 H 1.09002 * 109.46710 * 60.00553 * 9 8 7 42 42 H 1.08995 * 109.47220 * 300.00122 * 9 8 7 43 43 H 1.00896 * 111.00470 * 56.05131 * 10 9 8 44 44 H 1.09000 * 109.46874 * 60.00073 * 13 11 10 45 45 H 1.08998 * 109.46932 * 179.97438 * 13 11 10 46 46 H 1.08997 * 109.47255 * 300.00101 * 13 11 10 47 47 H 1.08005 * 119.96654 * 0.02562 * 15 14 11 48 48 H 1.08000 * 120.03259 * 180.26925 * 16 15 14 49 49 H 0.97005 * 119.99499 * 180.02562 * 22 21 19 50 50 H 1.07999 * 120.04137 * 179.97438 * 27 17 16 51 51 H 1.07994 * 119.96237 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 1.2442 -1.1711 2.0289 6 7 3.3573 -0.8341 1.4434 7 6 3.8457 -1.5243 2.6399 8 6 5.3757 -1.5255 2.6391 9 6 5.8857 -2.2458 3.8890 10 7 7.3547 -2.2464 3.8885 11 6 7.8811 -2.9318 5.0765 12 1 7.2251 -3.7622 5.3374 13 6 7.9473 -1.9473 6.2458 14 6 9.2630 -3.4563 4.7827 15 6 10.1468 -2.6945 4.0402 16 6 11.4158 -3.1699 3.7742 17 6 11.8002 -4.4193 4.2433 18 8 13.0452 -4.8916 3.9791 19 6 13.3934 -6.0577 4.5594 20 1 12.6672 -6.6127 5.1346 21 6 14.6840 -6.5443 4.4177 22 7 15.5685 -5.8685 3.7165 23 14 15.1663 -8.1603 5.2210 24 1 14.9071 -9.2784 4.2789 25 1 16.6100 -8.1294 5.5675 26 1 14.3652 -8.3577 6.4559 27 6 10.9085 -5.1843 4.9838 28 6 9.6426 -4.7010 5.2509 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6767 1.9564 -0.8899 34 1 1.6768 1.9562 0.8900 35 1 3.1301 1.4424 0.0005 36 1 3.9877 -0.4654 0.8050 37 1 3.4819 -2.5519 2.6404 38 1 3.4828 -1.0099 3.5296 39 1 5.7399 -0.4981 2.6383 40 1 5.7382 -2.0402 1.7493 41 1 5.5215 -3.2732 3.8902 42 1 5.5232 -1.7308 4.7785 43 1 7.7167 -1.3070 3.8227 44 1 6.9477 -1.5679 6.4583 45 1 8.3374 -2.4559 7.1274 46 1 8.6032 -1.1168 5.9850 47 1 9.8459 -1.7247 3.6722 48 1 12.1070 -2.5727 3.1980 49 1 16.4713 -6.2093 3.6171 50 1 11.2042 -6.1564 5.3496 51 1 8.9489 -5.2953 5.8271 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182076747.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:29 Heat of formation + Delta-G solvation = -84.453528 kcal Electronic energy + Delta-G solvation = -27169.942245 eV Core-core repulsion = 23261.085336 eV Total energy + Delta-G solvation = -3908.856908 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.92767 -40.80835 -39.12907 -37.53585 -36.16545 -35.43999 -34.29438 -33.27159 -31.77387 -30.45240 -29.15830 -27.96528 -27.33791 -26.14489 -24.09670 -23.81615 -23.16546 -22.50078 -21.43039 -20.71678 -19.72675 -18.79742 -18.09792 -17.32567 -16.89760 -16.68043 -16.45347 -16.20277 -16.13769 -15.57210 -15.50271 -15.33204 -15.04834 -14.94476 -14.48537 -14.37284 -14.02816 -13.97409 -13.80708 -13.52199 -13.49092 -13.23928 -13.15334 -13.07888 -12.89036 -12.79594 -12.49165 -12.43080 -12.30381 -12.14086 -12.05321 -12.00221 -11.96196 -11.82236 -11.66373 -11.13134 -10.78154 -10.75319 -10.09809 -9.71547 -9.27251 -8.82394 -8.45236 -6.13033 0.66052 0.76760 1.35259 1.44581 1.52617 1.63818 2.18951 2.20598 2.84440 3.15129 3.32880 3.57070 3.71961 3.97179 3.99129 4.04044 4.07942 4.11856 4.19769 4.20632 4.26919 4.41149 4.42781 4.50466 4.56696 4.65145 4.72970 4.75630 4.76620 4.80952 4.90360 4.91364 4.93646 4.95614 5.08734 5.14650 5.17154 5.22050 5.24702 5.30377 5.32249 5.33026 5.34694 5.48066 5.63953 5.76140 5.82881 6.05860 6.20109 6.30526 6.54570 6.58498 6.99778 7.26076 7.82253 8.78162 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.024809 B = 0.001501 C = 0.001481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.345309 B =18647.218589 C =18904.330701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.111 4.111 3 C -0.141 4.141 4 C 0.507 3.493 5 O -0.591 6.591 6 N -0.718 5.718 7 C 0.123 3.877 8 C -0.115 4.115 9 C 0.064 3.936 10 N -0.688 5.688 11 C 0.145 3.855 12 H 0.084 0.916 13 C -0.171 4.171 14 C -0.142 4.142 15 C -0.045 4.045 16 C -0.206 4.206 17 C 0.108 3.892 18 O -0.236 6.236 19 C -0.413 4.413 20 H 0.100 0.900 21 C -0.023 4.023 22 N -0.921 5.921 23 Si 1.018 2.982 24 H -0.264 1.264 25 H -0.271 1.271 26 H -0.254 1.254 27 C -0.243 4.243 28 C -0.070 4.070 29 H 0.045 0.955 30 H 0.084 0.916 31 H 0.045 0.955 32 H 0.119 0.881 33 H 0.084 0.916 34 H 0.049 0.951 35 H 0.074 0.926 36 H 0.416 0.584 37 H 0.054 0.946 38 H 0.059 0.941 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.067 0.933 42 H 0.041 0.959 43 H 0.347 0.653 44 H 0.069 0.931 45 H 0.057 0.943 46 H 0.059 0.941 47 H 0.145 0.855 48 H 0.110 0.890 49 H 0.272 0.728 50 H 0.115 0.885 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.598 14.052 -4.171 30.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.132 4.132 3 C -0.199 4.199 4 C 0.295 3.705 5 O -0.472 6.472 6 N -0.371 5.371 7 C -0.002 4.002 8 C -0.153 4.153 9 C -0.065 4.065 10 N -0.319 5.319 11 C 0.035 3.965 12 H 0.102 0.898 13 C -0.230 4.230 14 C -0.143 4.143 15 C -0.063 4.063 16 C -0.225 4.225 17 C 0.058 3.942 18 O -0.143 6.143 19 C -0.489 4.489 20 H 0.117 0.883 21 C -0.220 4.220 22 N -0.560 5.560 23 Si 0.837 3.163 24 H -0.189 1.189 25 H -0.195 1.195 26 H -0.178 1.178 27 C -0.262 4.262 28 C -0.089 4.089 29 H 0.065 0.935 30 H 0.103 0.897 31 H 0.065 0.935 32 H 0.137 0.863 33 H 0.103 0.897 34 H 0.068 0.932 35 H 0.093 0.907 36 H 0.253 0.747 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.102 0.898 40 H 0.096 0.904 41 H 0.085 0.915 42 H 0.059 0.941 43 H 0.167 0.833 44 H 0.088 0.912 45 H 0.076 0.924 46 H 0.078 0.922 47 H 0.163 0.837 48 H 0.128 0.872 49 H 0.081 0.919 50 H 0.133 0.867 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -26.716 13.253 -4.200 30.117 hybrid contribution 0.884 -0.224 0.755 1.184 sum -25.833 13.029 -3.445 29.137 Atomic orbital electron populations 1.21624 0.93142 1.01949 1.02434 1.21371 0.97918 0.98294 0.95661 1.21801 1.02068 0.92710 1.03279 1.21380 0.82192 0.78837 0.88073 1.90686 1.56644 1.50790 1.49049 1.45971 1.07057 1.58287 1.25741 1.21209 0.94454 0.96810 0.87683 1.21605 0.92313 1.02148 0.99233 1.21837 0.87176 1.00708 0.96814 1.60464 1.07388 1.23542 1.40549 1.20134 0.91146 0.96563 0.88617 0.89793 1.22427 1.02224 0.99596 0.98751 1.19666 0.96753 0.95116 1.02750 1.20679 0.90364 0.99643 0.95611 1.20477 0.99117 0.94728 1.08190 1.19949 0.85774 0.93922 0.94505 1.83935 1.27493 1.38540 1.64319 1.21797 0.97677 0.96958 1.32468 0.88303 1.26562 0.94154 1.03703 0.97623 1.70190 1.04979 1.40650 1.40168 0.84603 0.78103 0.75031 0.78567 1.18859 1.19537 1.17750 1.21202 0.96087 1.01848 1.07084 1.20915 0.94306 0.95560 0.98072 0.93545 0.89728 0.93536 0.86317 0.89670 0.93204 0.90708 0.74699 0.92791 0.92298 0.89838 0.90431 0.91450 0.94090 0.83319 0.91191 0.92423 0.92191 0.83745 0.87168 0.91924 0.86721 0.84583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.55 8.48 71.98 0.61 -0.94 16 2 C -0.11 -1.05 3.26 -11.54 -0.04 -1.09 16 3 C -0.14 -0.77 9.09 71.98 0.65 -0.12 16 4 C 0.51 8.40 7.15 87.66 0.63 9.02 16 5 O -0.59 -15.58 15.98 -3.04 -0.05 -15.63 16 6 N -0.72 -8.36 5.45 -463.07 -2.52 -10.89 16 7 C 0.12 1.65 5.67 86.38 0.49 2.14 16 8 C -0.11 -1.22 5.59 30.59 0.17 -1.05 16 9 C 0.06 0.88 5.48 86.30 0.47 1.36 16 10 N -0.69 -12.14 5.69 -495.43 -2.82 -14.96 16 11 C 0.15 3.05 2.79 44.17 0.12 3.17 16 12 H 0.08 1.71 7.66 -2.39 -0.02 1.69 16 13 C -0.17 -3.04 9.14 71.98 0.66 -2.39 16 14 C -0.14 -4.26 4.96 -19.83 -0.10 -4.36 16 15 C -0.04 -1.46 9.32 22.25 0.21 -1.26 16 16 C -0.21 -8.80 9.99 22.39 0.22 -8.57 16 17 C 0.11 5.48 6.65 22.58 0.15 5.63 16 18 O -0.24 -14.46 9.76 -22.72 -0.22 -14.68 16 19 C -0.41 -24.44 9.49 67.92 0.64 -23.80 16 20 H 0.10 5.39 5.20 -2.91 -0.02 5.38 16 21 C -0.02 -1.34 5.49 84.83 0.47 -0.87 16 22 N -0.92 -57.13 13.67 21.61 0.30 -56.84 16 23 Si 1.02 43.37 29.55 68.60 2.03 45.39 16 24 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 25 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 26 H -0.25 -10.06 7.11 99.48 0.71 -9.35 16 27 C -0.24 -10.74 9.17 22.39 0.21 -10.53 16 28 C -0.07 -2.41 9.66 22.25 0.21 -2.20 16 29 H 0.05 0.68 8.10 -2.39 -0.02 0.66 16 30 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.05 0.68 8.10 -2.39 -0.02 0.66 16 32 H 0.12 0.64 8.14 -2.39 -0.02 0.63 16 33 H 0.08 0.23 8.14 -2.39 -0.02 0.21 16 34 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 35 H 0.07 0.21 7.56 -2.38 -0.02 0.19 16 36 H 0.42 2.35 7.89 -92.71 -0.73 1.62 16 37 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 40 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.07 1.05 8.06 -2.39 -0.02 1.03 16 42 H 0.04 0.50 7.43 -2.39 -0.02 0.49 16 43 H 0.35 5.20 7.81 -89.70 -0.70 4.50 16 44 H 0.07 0.98 7.45 -2.39 -0.02 0.97 16 45 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.06 1.07 8.13 -2.39 -0.02 1.05 16 47 H 0.14 3.65 7.23 -2.91 -0.02 3.63 16 48 H 0.11 4.68 8.06 -2.91 -0.02 4.66 16 49 H 0.27 15.42 8.31 -92.70 -0.77 14.65 16 50 H 0.11 5.20 5.64 -2.91 -0.02 5.18 16 51 H 0.14 3.79 8.03 -2.91 -0.02 3.77 16 Total: -1.00 -78.85 416.76 1.99 -76.86 By element: Atomic # 1 Polarization: 27.11 SS G_CDS: -0.51 Total: 26.60 kcal Atomic # 6 Polarization: -41.64 SS G_CDS: 5.78 Total: -35.86 kcal Atomic # 7 Polarization: -77.64 SS G_CDS: -5.05 Total: -82.69 kcal Atomic # 8 Polarization: -30.04 SS G_CDS: -0.27 Total: -30.31 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.39 kcal Total: -78.85 1.99 -76.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182076747.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.592 kcal (2) G-P(sol) polarization free energy of solvation -78.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds