Wall clock time and date at job start Tue Mar 31 2020 19:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.50874 * 2 1 4 4 C 1.53105 * 109.50596 * 239.87131 * 2 1 3 5 5 N 1.47013 * 109.25856 * 183.21690 * 4 2 1 6 6 C 1.46899 * 110.99906 * 182.39303 * 5 4 2 7 7 C 1.50703 * 109.47107 * 46.36793 * 6 5 4 8 8 C 1.38286 * 119.92142 * 269.72559 * 7 6 5 9 9 C 1.38108 * 120.06868 * 179.72432 * 8 7 6 10 10 C 1.38904 * 119.92733 * 0.54850 * 9 8 7 11 11 N 1.39681 * 120.07777 * 179.70234 * 10 9 8 12 12 C 1.46493 * 119.99864 * 180.02562 * 11 10 9 13 13 C 1.46499 * 119.99721 * 0.02562 * 11 10 9 14 14 C 1.50697 * 109.47084 * 89.99864 * 13 11 10 15 15 H 1.07996 * 120.00346 * 359.97438 * 14 13 11 16 16 C 1.37880 * 119.99938 * 180.02562 * 14 13 11 17 17 N 1.31515 * 119.99948 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00071 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47424 * 59.99243 * 18 16 14 20 20 H 1.48498 * 109.47305 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47075 * 299.99453 * 18 16 14 22 22 C 1.38913 * 119.85166 * 359.72744 * 10 9 8 23 23 C 1.38106 * 119.92415 * 359.97438 * 22 10 9 24 24 C 1.47011 * 110.74921 * 58.61974 * 5 4 2 25 25 C 1.53100 * 109.25980 * 301.38209 * 24 5 4 26 26 H 1.09006 * 109.50496 * 296.91490 * 25 24 5 27 27 C 1.53003 * 109.50793 * 176.78824 * 25 24 5 28 28 O 1.42898 * 109.46943 * 175.00150 * 27 25 24 29 29 O 1.43010 * 109.50585 * 120.09509 * 2 1 3 30 30 H 1.08996 * 109.47204 * 299.91399 * 1 2 3 31 31 H 1.09007 * 109.46953 * 59.90988 * 1 2 3 32 32 H 1.08996 * 109.47753 * 179.90911 * 1 2 3 33 33 H 1.09006 * 109.50431 * 63.28045 * 4 2 1 34 34 H 1.08997 * 109.50720 * 303.15544 * 4 2 1 35 35 H 1.09002 * 109.47043 * 166.36773 * 6 5 4 36 36 H 1.09001 * 109.47354 * 286.36835 * 6 5 4 37 37 H 1.07999 * 119.96544 * 359.97438 * 8 7 6 38 38 H 1.08005 * 120.03586 * 180.27157 * 9 8 7 39 39 H 1.08998 * 109.47210 * 90.00326 * 12 11 10 40 40 H 1.09010 * 109.46805 * 209.99718 * 12 11 10 41 41 H 1.08996 * 109.47705 * 329.99911 * 12 11 10 42 42 H 1.08996 * 109.47221 * 209.99752 * 13 11 10 43 43 H 1.09003 * 109.46933 * 329.99841 * 13 11 10 44 44 H 0.96998 * 119.99847 * 180.02562 * 17 16 14 45 45 H 1.08000 * 120.03949 * 180.02562 * 22 10 9 46 46 H 1.07993 * 119.96110 * 180.02562 * 23 22 10 47 47 H 1.08998 * 109.51125 * 61.31440 * 24 5 4 48 48 H 1.09003 * 109.50377 * 181.40633 * 24 5 4 49 49 H 1.08999 * 109.46710 * 294.99908 * 27 25 24 50 50 H 1.08995 * 109.46933 * 55.00117 * 27 25 24 51 51 H 0.96693 * 114.00027 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0412 -0.7244 -1.2482 5 7 3.5093 -0.7889 -1.2043 6 6 4.0446 -1.4278 -2.4139 7 6 3.3702 -0.8460 -3.6296 8 6 2.2146 -1.4252 -4.1209 9 6 1.5909 -0.8912 -5.2314 10 6 2.1320 0.2221 -5.8617 11 7 1.5072 0.7611 -6.9887 12 6 2.0797 1.9349 -7.6524 13 6 0.2796 0.1525 -7.5070 14 6 -0.9153 0.7934 -6.8494 15 1 -0.7743 1.5756 -6.1182 16 6 -2.1884 0.3806 -7.1804 17 7 -2.3601 -0.5723 -8.0705 18 14 -3.6696 1.1756 -6.3658 19 1 -3.6758 2.6307 -6.6621 20 1 -4.9140 0.5585 -6.8911 21 1 -3.5964 0.9698 -4.8970 22 6 3.2961 0.7980 -5.3689 23 6 3.9113 0.2627 -4.2543 24 6 3.9638 -1.4886 0.0062 25 6 3.4334 -0.7566 1.2418 26 1 3.8534 0.2487 1.2776 27 6 3.8357 -1.5245 2.5025 28 8 3.4421 -0.7822 3.6584 29 8 2.0075 -0.6760 1.1663 30 1 -0.3633 0.5125 0.8907 31 1 -0.3633 0.5153 -0.8892 32 1 -0.3634 -1.0276 -0.0016 33 1 1.7273 -0.1802 -2.1390 34 1 1.6331 -1.7347 -1.2755 35 1 5.1183 -1.2499 -2.4740 36 1 3.8558 -2.5005 -2.3722 37 1 1.7971 -2.2937 -3.6332 38 1 0.6860 -1.3414 -5.6120 39 1 2.7813 1.6115 -8.4213 40 1 1.2812 2.5182 -8.1114 41 1 2.6021 2.5486 -6.9186 42 1 0.2259 0.3042 -8.5850 43 1 0.2841 -0.9158 -7.2902 44 1 -3.2558 -0.8625 -8.3037 45 1 3.7192 1.6640 -5.8564 46 1 4.8161 0.7102 -3.8705 47 1 3.5864 -2.5111 -0.0010 48 1 5.0535 -1.5029 0.0307 49 1 3.3418 -2.4962 2.5091 50 1 4.9164 -1.6661 2.5123 51 1 3.6658 -1.2105 4.4959 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191523975.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:30 Heat of formation + Delta-G solvation = -54.474564 kcal Electronic energy + Delta-G solvation = -29482.357343 eV Core-core repulsion = 25574.800421 eV Total energy + Delta-G solvation = -3907.556923 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.10176 -38.95274 -37.06614 -36.36530 -34.95158 -33.10624 -32.71942 -30.73628 -30.48522 -29.16468 -27.83980 -26.84006 -26.12031 -24.62282 -23.13727 -22.14689 -21.76310 -21.49417 -20.37166 -19.57537 -17.62732 -16.88026 -16.64850 -16.48208 -16.19098 -15.56422 -15.34560 -15.06480 -14.85286 -14.31364 -14.25591 -14.07063 -13.94457 -13.69883 -13.36567 -13.07603 -12.91189 -12.82239 -12.62527 -12.30220 -12.18474 -11.99899 -11.83776 -11.64141 -11.50012 -11.32901 -11.26870 -11.08204 -10.98449 -10.70948 -10.68717 -10.55092 -10.30329 -10.30247 -9.92542 -9.79849 -9.56202 -8.90006 -8.53197 -8.36439 -8.30257 -6.50590 -6.05043 -4.20535 2.04781 2.14526 3.26191 3.30905 3.33946 3.54267 3.61288 4.08922 4.11601 4.38481 4.54193 4.76720 4.83451 4.91523 4.94859 5.03222 5.10966 5.18642 5.19468 5.28864 5.30052 5.34104 5.42717 5.52124 5.57800 5.65843 5.72131 5.75132 5.79036 5.84223 5.97143 6.01602 6.04491 6.07815 6.22168 6.24547 6.34565 6.38334 6.59657 6.84573 6.91592 6.96253 7.04708 7.15524 7.19383 7.21866 7.31488 7.35500 7.54143 7.77824 8.12024 8.22439 8.44073 8.88145 9.46440 10.92773 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.012830 B = 0.003001 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.868674 B = 9329.448969 C =10875.976399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.090 3.910 3 H 0.065 0.935 4 C 0.023 3.977 5 N -0.531 5.531 6 C 0.112 3.888 7 C -0.178 4.178 8 C -0.066 4.066 9 C -0.187 4.187 10 C 0.244 3.756 11 N -0.614 5.614 12 C 0.098 3.902 13 C 0.249 3.751 14 C -0.532 4.532 15 H 0.059 0.941 16 C 0.062 3.938 17 N -0.895 5.895 18 Si 0.896 3.104 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.275 1.275 22 C -0.223 4.223 23 C -0.051 4.051 24 C 0.025 3.975 25 C 0.096 3.904 26 H 0.072 0.928 27 C 0.086 3.914 28 O -0.564 6.564 29 O -0.374 6.374 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.102 0.898 34 H 0.040 0.960 35 H 0.076 0.924 36 H 0.035 0.965 37 H 0.107 0.893 38 H 0.132 0.868 39 H 0.036 0.964 40 H 0.067 0.933 41 H 0.055 0.945 42 H 0.030 0.970 43 H 0.036 0.964 44 H 0.265 0.735 45 H 0.114 0.886 46 H 0.110 0.890 47 H 0.042 0.958 48 H 0.084 0.916 49 H 0.053 0.947 50 H 0.060 0.940 51 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.143 -2.276 15.846 21.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.032 3.968 3 H 0.083 0.917 4 C -0.105 4.105 5 N -0.256 5.256 6 C -0.014 4.014 7 C -0.180 4.180 8 C -0.086 4.086 9 C -0.210 4.210 10 C 0.136 3.864 11 N -0.320 5.320 12 C -0.046 4.046 13 C 0.129 3.871 14 C -0.571 4.571 15 H 0.077 0.923 16 C -0.140 4.140 17 N -0.534 5.534 18 Si 0.723 3.277 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.200 1.200 22 C -0.246 4.246 23 C -0.070 4.070 24 C -0.103 4.103 25 C 0.037 3.963 26 H 0.090 0.910 27 C 0.008 3.992 28 O -0.369 6.369 29 O -0.293 6.293 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.120 0.880 34 H 0.058 0.942 35 H 0.095 0.905 36 H 0.053 0.947 37 H 0.125 0.875 38 H 0.150 0.850 39 H 0.054 0.946 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.048 0.952 43 H 0.053 0.947 44 H 0.074 0.926 45 H 0.132 0.868 46 H 0.128 0.872 47 H 0.060 0.940 48 H 0.103 0.897 49 H 0.071 0.929 50 H 0.079 0.921 51 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 13.715 -1.478 15.213 20.536 hybrid contribution -0.867 -0.723 0.454 1.217 sum 12.848 -2.202 15.667 20.380 Atomic orbital electron populations 1.21743 0.92628 1.02985 1.02831 1.22197 0.94943 0.95635 0.84007 0.91729 1.22937 0.87373 1.00317 0.99865 1.62328 1.09590 1.52242 1.01403 1.20860 0.98578 0.95165 0.86825 1.19112 0.99171 1.00526 0.99239 1.20678 0.94217 0.98332 0.95333 1.20847 1.02862 0.98603 0.98641 1.17969 0.90421 0.91388 0.86617 1.47126 1.27253 1.30134 1.27452 1.21482 0.98287 0.88426 0.96438 1.19286 0.79462 0.93946 0.94376 1.21527 0.90691 1.20825 1.24062 0.92298 1.24960 0.98991 0.95008 0.95062 1.69918 1.22795 1.28569 1.32108 0.86586 0.81626 0.79550 0.79888 1.20212 1.21181 1.20037 1.20575 0.98731 1.03941 1.01359 1.20489 0.98240 0.94332 0.93942 1.22661 1.00859 0.96148 0.90661 1.22031 0.82621 0.99427 0.92190 0.91039 1.22111 0.97906 0.94284 0.84948 1.86554 1.84664 1.49795 1.15918 1.88015 1.19713 1.78461 1.43112 0.91759 0.90443 0.91955 0.88020 0.94185 0.90531 0.94711 0.87534 0.85050 0.94572 0.91417 0.92627 0.95196 0.94659 0.92562 0.86829 0.87197 0.94000 0.89740 0.92896 0.92144 0.77545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.57 37.16 0.36 -1.45 16 2 C 0.09 1.21 3.43 -26.68 -0.09 1.12 16 3 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 4 C 0.02 0.32 3.94 -3.71 -0.01 0.30 16 5 N -0.53 -6.73 4.87 -235.74 -1.15 -7.88 16 6 C 0.11 1.40 5.43 -4.98 -0.03 1.37 16 7 C -0.18 -2.66 4.14 -104.59 -0.43 -3.09 16 8 C -0.07 -1.10 7.87 -39.61 -0.31 -1.41 16 9 C -0.19 -3.67 9.21 -39.38 -0.36 -4.03 16 10 C 0.24 4.80 6.55 -83.79 -0.55 4.26 16 11 N -0.61 -12.92 2.99 -181.01 -0.54 -13.46 16 12 C 0.10 1.69 10.19 59.84 0.61 2.30 16 13 C 0.25 6.15 4.91 -5.20 -0.03 6.13 16 14 C -0.53 -14.31 9.39 -34.44 -0.32 -14.63 16 15 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 17 N -0.90 -25.41 13.29 55.43 0.74 -24.68 16 18 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 22 C -0.22 -3.78 9.21 -39.38 -0.36 -4.14 16 23 C -0.05 -0.77 9.69 -39.61 -0.38 -1.16 16 24 C 0.03 0.27 4.91 -3.71 -0.02 0.25 16 25 C 0.10 1.09 3.09 -26.68 -0.08 1.00 16 26 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 27 C 0.09 0.75 6.71 37.16 0.25 1.00 16 28 O -0.56 -5.51 13.63 -39.73 -0.54 -6.05 16 29 O -0.37 -5.20 10.08 -39.73 -0.40 -5.60 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.10 1.59 5.93 -51.93 -0.31 1.29 16 34 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.86 8.08 -51.93 -0.42 0.44 16 36 H 0.03 0.42 8.02 -51.93 -0.42 0.00 16 37 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 38 H 0.13 2.87 6.14 -52.48 -0.32 2.55 16 39 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 1.20 8.07 -51.92 -0.42 0.78 16 41 H 0.06 0.85 6.20 -51.93 -0.32 0.53 16 42 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 43 H 0.04 0.92 6.20 -51.93 -0.32 0.60 16 44 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 45 H 0.11 1.75 6.14 -52.49 -0.32 1.43 16 46 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 47 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 51 H 0.38 1.72 9.12 45.56 0.42 2.13 16 LS Contribution 403.16 15.07 6.08 6.08 Total: -1.00 -30.80 403.16 -10.60 -41.40 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -7.90 Total: 4.69 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: -1.87 Total: -10.59 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: -0.95 Total: -46.01 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: -0.94 Total: -11.65 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -30.80 -10.60 -41.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191523975.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.075 kcal (2) G-P(sol) polarization free energy of solvation -30.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds