Wall clock time and date at job start Tue Mar 31 2020 19:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.50874 * 2 1 4 4 C 1.53105 * 109.50596 * 239.87131 * 2 1 3 5 5 N 1.47013 * 109.25856 * 183.21690 * 4 2 1 6 6 C 1.46899 * 110.99906 * 182.39303 * 5 4 2 7 7 C 1.50703 * 109.47107 * 46.36793 * 6 5 4 8 8 C 1.38286 * 119.92142 * 269.72559 * 7 6 5 9 9 C 1.38108 * 120.06868 * 179.72432 * 8 7 6 10 10 C 1.38904 * 119.92733 * 0.54850 * 9 8 7 11 11 N 1.39681 * 120.07777 * 179.70234 * 10 9 8 12 12 C 1.46493 * 119.99864 * 180.02562 * 11 10 9 13 13 C 1.46499 * 119.99721 * 0.02562 * 11 10 9 14 14 C 1.50697 * 109.47084 * 89.99864 * 13 11 10 15 15 H 1.07996 * 120.00346 * 359.97438 * 14 13 11 16 16 C 1.37880 * 119.99938 * 180.02562 * 14 13 11 17 17 N 1.31515 * 119.99948 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00071 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47424 * 59.99243 * 18 16 14 20 20 H 1.48498 * 109.47305 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47075 * 299.99453 * 18 16 14 22 22 C 1.38913 * 119.85166 * 359.72744 * 10 9 8 23 23 C 1.38106 * 119.92415 * 359.97438 * 22 10 9 24 24 C 1.47011 * 110.74921 * 58.61974 * 5 4 2 25 25 C 1.53100 * 109.25980 * 301.38209 * 24 5 4 26 26 H 1.09006 * 109.50496 * 296.91490 * 25 24 5 27 27 C 1.53003 * 109.50793 * 176.78824 * 25 24 5 28 28 O 1.42898 * 109.46943 * 175.00150 * 27 25 24 29 29 O 1.43010 * 109.50585 * 120.09509 * 2 1 3 30 30 H 1.08996 * 109.47204 * 299.91399 * 1 2 3 31 31 H 1.09007 * 109.46953 * 59.90988 * 1 2 3 32 32 H 1.08996 * 109.47753 * 179.90911 * 1 2 3 33 33 H 1.09006 * 109.50431 * 63.28045 * 4 2 1 34 34 H 1.08997 * 109.50720 * 303.15544 * 4 2 1 35 35 H 1.09002 * 109.47043 * 166.36773 * 6 5 4 36 36 H 1.09001 * 109.47354 * 286.36835 * 6 5 4 37 37 H 1.07999 * 119.96544 * 359.97438 * 8 7 6 38 38 H 1.08005 * 120.03586 * 180.27157 * 9 8 7 39 39 H 1.08998 * 109.47210 * 90.00326 * 12 11 10 40 40 H 1.09010 * 109.46805 * 209.99718 * 12 11 10 41 41 H 1.08996 * 109.47705 * 329.99911 * 12 11 10 42 42 H 1.08996 * 109.47221 * 209.99752 * 13 11 10 43 43 H 1.09003 * 109.46933 * 329.99841 * 13 11 10 44 44 H 0.96998 * 119.99847 * 180.02562 * 17 16 14 45 45 H 1.08000 * 120.03949 * 180.02562 * 22 10 9 46 46 H 1.07993 * 119.96110 * 180.02562 * 23 22 10 47 47 H 1.08998 * 109.51125 * 61.31440 * 24 5 4 48 48 H 1.09003 * 109.50377 * 181.40633 * 24 5 4 49 49 H 1.08999 * 109.46710 * 294.99908 * 27 25 24 50 50 H 1.08995 * 109.46933 * 55.00117 * 27 25 24 51 51 H 0.96693 * 114.00027 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0412 -0.7244 -1.2482 5 7 3.5093 -0.7889 -1.2043 6 6 4.0446 -1.4278 -2.4139 7 6 3.3702 -0.8460 -3.6296 8 6 2.2146 -1.4252 -4.1209 9 6 1.5909 -0.8912 -5.2314 10 6 2.1320 0.2221 -5.8617 11 7 1.5072 0.7611 -6.9887 12 6 2.0797 1.9349 -7.6524 13 6 0.2796 0.1525 -7.5070 14 6 -0.9153 0.7934 -6.8494 15 1 -0.7743 1.5756 -6.1182 16 6 -2.1884 0.3806 -7.1804 17 7 -2.3601 -0.5723 -8.0705 18 14 -3.6696 1.1756 -6.3658 19 1 -3.6758 2.6307 -6.6621 20 1 -4.9140 0.5585 -6.8911 21 1 -3.5964 0.9698 -4.8970 22 6 3.2961 0.7980 -5.3689 23 6 3.9113 0.2627 -4.2543 24 6 3.9638 -1.4886 0.0062 25 6 3.4334 -0.7566 1.2418 26 1 3.8534 0.2487 1.2776 27 6 3.8357 -1.5245 2.5025 28 8 3.4421 -0.7822 3.6584 29 8 2.0075 -0.6760 1.1663 30 1 -0.3633 0.5125 0.8907 31 1 -0.3633 0.5153 -0.8892 32 1 -0.3634 -1.0276 -0.0016 33 1 1.7273 -0.1802 -2.1390 34 1 1.6331 -1.7347 -1.2755 35 1 5.1183 -1.2499 -2.4740 36 1 3.8558 -2.5005 -2.3722 37 1 1.7971 -2.2937 -3.6332 38 1 0.6860 -1.3414 -5.6120 39 1 2.7813 1.6115 -8.4213 40 1 1.2812 2.5182 -8.1114 41 1 2.6021 2.5486 -6.9186 42 1 0.2259 0.3042 -8.5850 43 1 0.2841 -0.9158 -7.2902 44 1 -3.2558 -0.8625 -8.3037 45 1 3.7192 1.6640 -5.8564 46 1 4.8161 0.7102 -3.8705 47 1 3.5864 -2.5111 -0.0010 48 1 5.0535 -1.5029 0.0307 49 1 3.3418 -2.4962 2.5091 50 1 4.9164 -1.6661 2.5123 51 1 3.6658 -1.2105 4.4959 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191523975.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:29 Heat of formation + Delta-G solvation = -75.622194 kcal Electronic energy + Delta-G solvation = -29483.274374 eV Core-core repulsion = 25574.800421 eV Total energy + Delta-G solvation = -3908.473953 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.14843 -40.24672 -38.02771 -37.43730 -36.22873 -34.73586 -34.01752 -31.95613 -31.88004 -30.24684 -29.59925 -27.99660 -27.15957 -26.14804 -24.56339 -23.28200 -22.93479 -22.77502 -21.37061 -20.96684 -18.63914 -18.32521 -18.10187 -17.73587 -17.21247 -16.94562 -16.44413 -16.38807 -16.01824 -15.77231 -15.36999 -15.30320 -15.07370 -14.79913 -14.57300 -14.55876 -14.29905 -14.03244 -13.72403 -13.59483 -13.32377 -13.23300 -13.16796 -13.04582 -12.83831 -12.69230 -12.66816 -12.53458 -12.45024 -12.16284 -12.02237 -11.81549 -11.76501 -11.48696 -11.40599 -10.95825 -10.64782 -10.56407 -10.42516 -9.67130 -9.35808 -8.36815 -7.81269 -6.38078 0.68348 0.80153 1.36830 1.38259 1.46506 2.33333 2.61902 2.63570 2.71554 3.05635 3.19740 3.34913 3.84886 3.90837 4.02895 4.03516 4.11068 4.12356 4.23334 4.26655 4.35072 4.39594 4.44205 4.46042 4.52947 4.58156 4.63412 4.63525 4.68767 4.71397 4.81632 4.86305 4.90660 4.91849 4.97817 5.00585 5.07309 5.11104 5.19346 5.20392 5.31354 5.57296 5.63638 5.68993 5.84215 5.98618 6.02549 6.06418 6.19131 6.24565 6.48905 6.81732 6.92400 6.93890 7.33773 8.82365 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.012830 B = 0.003001 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.868674 B = 9329.448969 C =10875.976399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.092 3.908 3 H 0.058 0.942 4 C 0.031 3.969 5 N -0.536 5.536 6 C 0.115 3.885 7 C -0.163 4.163 8 C -0.064 4.064 9 C -0.214 4.214 10 C 0.215 3.785 11 N -0.631 5.631 12 C 0.098 3.902 13 C 0.267 3.733 14 C -0.540 4.540 15 H 0.049 0.951 16 C 0.014 3.986 17 N -0.927 5.927 18 Si 0.959 3.041 19 H -0.269 1.269 20 H -0.279 1.279 21 H -0.272 1.272 22 C -0.217 4.217 23 C -0.046 4.046 24 C 0.029 3.971 25 C 0.087 3.913 26 H 0.061 0.939 27 C 0.088 3.912 28 O -0.591 6.591 29 O -0.391 6.391 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.079 0.921 34 H 0.032 0.968 35 H 0.102 0.898 36 H 0.042 0.958 37 H 0.115 0.885 38 H 0.094 0.906 39 H 0.053 0.947 40 H 0.055 0.945 41 H 0.079 0.921 42 H 0.009 0.991 43 H 0.011 0.989 44 H 0.267 0.733 45 H 0.133 0.867 46 H 0.144 0.856 47 H 0.044 0.956 48 H 0.114 0.886 49 H 0.056 0.944 50 H 0.093 0.907 51 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.502 -1.873 18.158 24.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.034 3.966 3 H 0.076 0.924 4 C -0.097 4.097 5 N -0.261 5.261 6 C -0.012 4.012 7 C -0.166 4.166 8 C -0.084 4.084 9 C -0.237 4.237 10 C 0.110 3.890 11 N -0.339 5.339 12 C -0.045 4.045 13 C 0.145 3.855 14 C -0.579 4.579 15 H 0.067 0.933 16 C -0.186 4.186 17 N -0.566 5.566 18 Si 0.783 3.217 19 H -0.194 1.194 20 H -0.205 1.205 21 H -0.197 1.197 22 C -0.240 4.240 23 C -0.065 4.065 24 C -0.099 4.099 25 C 0.029 3.971 26 H 0.079 0.921 27 C 0.010 3.990 28 O -0.400 6.400 29 O -0.310 6.310 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.097 0.903 34 H 0.051 0.949 35 H 0.121 0.879 36 H 0.060 0.940 37 H 0.133 0.867 38 H 0.112 0.888 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.097 0.903 42 H 0.027 0.973 43 H 0.028 0.972 44 H 0.076 0.924 45 H 0.151 0.849 46 H 0.161 0.839 47 H 0.062 0.938 48 H 0.132 0.868 49 H 0.074 0.926 50 H 0.111 0.889 51 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 16.119 -1.078 17.563 23.863 hybrid contribution -1.482 -0.897 -0.140 1.738 sum 14.637 -1.975 17.423 22.841 Atomic orbital electron populations 1.21724 0.92435 1.02906 1.02926 1.22130 0.95232 0.95200 0.84045 0.92409 1.22757 0.88536 0.99475 0.98980 1.62337 1.08493 1.52937 1.02334 1.20917 0.99547 0.95320 0.85381 1.19432 0.97854 0.99725 0.99551 1.20771 0.94744 0.98559 0.94300 1.20713 1.02590 0.99836 1.00523 1.18225 0.91826 0.92088 0.86842 1.46980 1.26710 1.31525 1.28668 1.21605 0.98209 0.87427 0.97277 1.18763 0.81045 0.92740 0.92920 1.21733 0.91877 1.20523 1.23792 0.93253 1.25763 1.01771 0.95472 0.95575 1.70027 1.23476 1.29781 1.33355 0.85597 0.78283 0.78914 0.78862 1.19360 1.20452 1.19736 1.20815 0.97408 1.04143 1.01615 1.20878 0.98896 0.93857 0.92906 1.22721 1.02462 0.95676 0.89030 1.22292 0.81183 0.99549 0.94086 0.92118 1.22165 0.99756 0.93508 0.83552 1.86491 1.85194 1.50930 1.17354 1.88003 1.21608 1.78410 1.43023 0.91141 0.90852 0.92102 0.90281 0.94926 0.87939 0.93998 0.86725 0.88767 0.92875 0.92570 0.90296 0.97316 0.97154 0.92396 0.84909 0.83873 0.93761 0.86838 0.92564 0.88906 0.75114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.55 9.57 71.98 0.69 -2.86 16 2 C 0.09 2.42 3.43 30.63 0.10 2.52 16 3 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 4 C 0.03 0.82 3.94 86.32 0.34 1.16 16 5 N -0.54 -12.13 4.87 -899.76 -4.38 -16.51 16 6 C 0.11 2.46 5.43 85.56 0.46 2.92 16 7 C -0.16 -4.54 4.14 -19.84 -0.08 -4.62 16 8 C -0.06 -2.15 7.87 22.25 0.18 -1.97 16 9 C -0.21 -8.81 9.21 22.40 0.21 -8.61 16 10 C 0.22 8.65 6.55 38.21 0.25 8.90 16 11 N -0.63 -27.45 2.99 -726.58 -2.17 -29.62 16 12 C 0.10 3.37 10.19 127.77 1.30 4.67 16 13 C 0.27 14.00 4.91 85.63 0.42 14.43 16 14 C -0.54 -30.31 9.39 25.60 0.24 -30.07 16 15 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 16 C 0.01 0.76 5.46 84.66 0.46 1.22 16 17 N -0.93 -54.48 13.29 21.45 0.28 -54.19 16 18 Si 0.96 44.10 29.54 68.60 2.03 46.13 16 19 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 20 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 21 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 22 C -0.22 -7.00 9.21 22.40 0.21 -6.79 16 23 C -0.05 -1.27 9.69 22.25 0.22 -1.06 16 24 C 0.03 0.51 4.91 86.32 0.42 0.94 16 25 C 0.09 1.77 3.09 30.63 0.09 1.87 16 26 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 27 C 0.09 1.28 6.71 71.98 0.48 1.76 16 28 O -0.59 -10.23 13.63 -144.68 -1.97 -12.20 16 29 O -0.39 -10.41 10.08 -144.68 -1.46 -11.87 16 30 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 32 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.08 2.47 5.93 -2.38 -0.01 2.45 16 34 H 0.03 0.90 8.14 -2.39 -0.02 0.89 16 35 H 0.10 1.75 8.08 -2.39 -0.02 1.73 16 36 H 0.04 0.87 8.02 -2.39 -0.02 0.85 16 37 H 0.11 3.53 8.06 -2.91 -0.02 3.51 16 38 H 0.09 4.52 6.14 -2.91 -0.02 4.50 16 39 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.06 2.02 8.07 -2.38 -0.02 2.00 16 41 H 0.08 2.30 6.20 -2.39 -0.01 2.29 16 42 H 0.01 0.49 8.07 -2.39 -0.02 0.47 16 43 H 0.01 0.59 6.20 -2.39 -0.01 0.58 16 44 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 45 H 0.13 3.71 6.14 -2.91 -0.02 3.70 16 46 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 47 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 48 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 49 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 50 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 51 H 0.40 2.69 9.12 -74.06 -0.68 2.01 16 Total: -1.00 -69.10 403.16 -1.44 -70.54 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: 0.24 Total: 23.31 kcal Atomic # 6 Polarization: -21.58 SS G_CDS: 6.00 Total: -15.59 kcal Atomic # 7 Polarization: -94.05 SS G_CDS: -6.27 Total: -100.32 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -3.43 Total: -24.07 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -69.10 -1.44 -70.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191523975.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.081 kcal (2) G-P(sol) polarization free energy of solvation -69.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds