Wall clock time and date at job start Tue Mar 31 2020 19:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47228 * 2 1 4 4 N 1.46900 * 109.47420 * 239.99729 * 2 1 3 5 5 C 1.46899 * 110.99945 * 85.00018 * 4 2 1 6 6 C 1.52999 * 109.47206 * 179.97438 * 5 4 2 7 7 C 1.52998 * 109.47066 * 180.02562 * 6 5 4 8 8 N 1.46899 * 109.46899 * 180.02562 * 7 6 5 9 9 C 1.47022 * 110.99568 * 293.63078 * 8 7 6 10 10 C 1.53099 * 109.25519 * 177.60596 * 9 8 7 11 11 O 1.43023 * 109.25592 * 56.85434 * 10 9 8 12 12 C 1.43016 * 113.73731 * 301.32355 * 11 10 9 13 13 C 1.47012 * 111.00064 * 170.00182 * 8 7 6 14 14 C 1.50707 * 109.47215 * 119.99653 * 2 1 3 15 15 C 1.38302 * 119.93008 * 79.72301 * 14 2 1 16 16 C 1.38097 * 120.06845 * 179.72767 * 15 14 2 17 17 C 1.38880 * 119.92811 * 0.54920 * 16 15 14 18 18 O 1.35756 * 120.06665 * 179.74904 * 17 16 15 19 19 C 1.34831 * 117.00099 * 174.44752 * 18 17 16 20 20 H 1.08006 * 119.99708 * 5.04992 * 19 18 17 21 21 C 1.38652 * 120.00064 * 185.05609 * 19 18 17 22 22 N 1.31562 * 120.00016 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 120.00040 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.46748 * 90.00210 * 23 21 19 25 25 H 1.48495 * 109.46888 * 210.00178 * 23 21 19 26 26 H 1.48493 * 109.46905 * 330.00160 * 23 21 19 27 27 C 1.38877 * 119.86582 * 359.72800 * 17 16 15 28 28 C 1.38095 * 119.92895 * 359.97438 * 27 17 16 29 29 H 1.08995 * 109.47327 * 300.00194 * 1 2 3 30 30 H 1.08994 * 109.46920 * 60.00266 * 1 2 3 31 31 H 1.08994 * 109.46805 * 180.02562 * 1 2 3 32 32 H 1.00903 * 110.99930 * 208.95437 * 4 2 1 33 33 H 1.09005 * 109.46644 * 60.00050 * 5 4 2 34 34 H 1.08996 * 109.47251 * 300.00401 * 5 4 2 35 35 H 1.08996 * 109.47413 * 300.00387 * 6 5 4 36 36 H 1.09006 * 109.46631 * 59.99990 * 6 5 4 37 37 H 1.08996 * 109.46897 * 299.99494 * 7 6 5 38 38 H 1.08993 * 109.47202 * 60.00299 * 7 6 5 39 39 H 1.08997 * 109.50743 * 297.54331 * 9 8 7 40 40 H 1.09004 * 109.50585 * 57.67722 * 9 8 7 41 41 H 1.08994 * 109.51483 * 296.91838 * 10 9 8 42 42 H 1.09001 * 109.54029 * 176.80581 * 10 9 8 43 43 H 1.09004 * 109.50622 * 298.74145 * 12 11 10 44 44 H 1.08998 * 109.54105 * 178.62717 * 12 11 10 45 45 H 1.08995 * 109.50176 * 302.32055 * 13 8 7 46 46 H 1.08990 * 109.50958 * 62.41161 * 13 8 7 47 47 H 1.08001 * 119.96170 * 0.02562 * 15 14 2 48 48 H 1.08004 * 120.03608 * 180.27946 * 16 15 14 49 49 H 0.96997 * 119.99964 * 179.97438 * 22 21 19 50 50 H 1.07996 * 120.03642 * 179.97438 * 27 17 16 51 51 H 1.07999 * 119.96968 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0826 0.2225 -2.3468 6 6 2.5964 -0.5330 -3.5741 7 6 2.6624 0.4202 -4.7690 8 7 3.1552 -0.3053 -5.9474 9 6 4.5531 -0.7218 -5.7631 10 6 5.0064 -1.5238 -6.9859 11 8 4.8285 -0.7306 -8.1626 12 6 3.4785 -0.3081 -8.3735 13 6 3.0097 0.5062 -7.1647 14 6 2.0324 -0.7104 1.2306 15 6 2.0608 -2.0926 1.2661 16 6 2.5259 -2.7464 2.3901 17 6 2.9546 -2.0145 3.4898 18 8 3.4075 -2.6544 4.5981 19 6 3.9152 -1.8870 5.5835 20 1 3.8736 -0.8105 5.5054 21 6 4.4907 -2.4796 6.6971 22 7 4.9866 -1.7307 7.6584 23 14 4.5621 -4.3413 6.8324 24 1 5.8251 -4.8336 6.2259 25 1 4.5134 -4.7358 8.2632 26 1 3.4047 -4.9344 6.1157 27 6 2.9194 -0.6267 3.4532 28 6 2.4591 0.0213 2.3239 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 2.9174 -1.1205 -1.0286 33 1 2.7590 1.0461 -2.1181 34 1 1.0872 0.6162 -2.5525 35 1 3.5918 -0.9264 -3.3681 36 1 1.9203 -1.3569 -3.8029 37 1 1.6671 0.8139 -4.9752 38 1 3.3387 1.2438 -4.5399 39 1 5.1840 0.1600 -5.6519 40 1 4.6332 -1.3425 -4.8706 41 1 4.4106 -2.4330 -7.0663 42 1 6.0589 -1.7867 -6.8798 43 1 2.8382 -1.1820 -8.4941 44 1 3.4254 0.3087 -9.2705 45 1 1.9633 0.7819 -7.2952 46 1 3.6153 1.4079 -7.0755 47 1 1.7235 -2.6612 0.4121 48 1 2.5520 -3.8259 2.4156 49 1 5.3889 -2.1453 8.4376 50 1 3.2517 -0.0548 4.3069 51 1 2.4318 1.1006 2.2946 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192944023.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:18 Heat of formation + Delta-G solvation = -45.328095 kcal Electronic energy + Delta-G solvation = -27759.532888 eV Core-core repulsion = 23852.372586 eV Total energy + Delta-G solvation = -3907.160302 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -39.99105 -39.38084 -37.86893 -36.78105 -35.58529 -32.92343 -32.31620 -31.59924 -30.36011 -29.84162 -28.15591 -27.24395 -25.35412 -24.50670 -23.99149 -22.25381 -21.98455 -21.28924 -20.76788 -19.86215 -17.86035 -17.33894 -17.02486 -16.58997 -16.23292 -15.75053 -15.47713 -15.38050 -15.04914 -14.85550 -14.53869 -14.30432 -14.04003 -13.85617 -13.76172 -13.62075 -12.94224 -12.82868 -12.66515 -12.57353 -12.38867 -12.26595 -12.21729 -11.96072 -11.85392 -11.75635 -11.56879 -11.28533 -11.17590 -11.01604 -10.80794 -10.72118 -10.64253 -10.44562 -10.14686 -10.07846 -9.41504 -8.88614 -8.83516 -8.43986 -8.27692 -7.34292 -6.44080 -4.10846 2.10982 2.17274 3.20405 3.24082 3.25723 3.38868 3.46880 4.11979 4.21697 4.42853 4.46199 4.51284 4.55014 4.71660 4.77415 4.82872 4.85778 4.97889 5.04416 5.06359 5.10084 5.10828 5.19219 5.23336 5.30825 5.34143 5.40519 5.43685 5.50402 5.55496 5.60959 5.63609 5.78837 5.83975 5.93152 5.96547 6.04650 6.12543 6.29737 6.40914 6.50472 6.53843 6.56479 6.71173 6.75212 6.94731 7.03037 7.25415 7.31842 7.45596 7.59488 7.77493 8.01436 8.91188 9.53608 10.63487 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.018359 B = 0.001751 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.784846 B =15987.952151 C =16894.207694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.141 3.859 3 H 0.041 0.959 4 N -0.683 5.683 5 C 0.060 3.940 6 C -0.113 4.113 7 C 0.057 3.943 8 N -0.536 5.536 9 C 0.014 3.986 10 C 0.063 3.937 11 O -0.388 6.388 12 C 0.064 3.936 13 C 0.017 3.983 14 C -0.185 4.185 15 C -0.057 4.057 16 C -0.194 4.194 17 C 0.161 3.839 18 O -0.217 6.217 19 C -0.390 4.390 20 H 0.106 0.894 21 C 0.063 3.937 22 N -0.879 5.879 23 Si 0.906 3.094 24 H -0.273 1.273 25 H -0.282 1.282 26 H -0.259 1.259 27 C -0.222 4.222 28 C -0.067 4.067 29 H 0.055 0.945 30 H 0.046 0.954 31 H 0.061 0.939 32 H 0.344 0.656 33 H 0.025 0.975 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.034 0.966 39 H 0.042 0.958 40 H 0.092 0.908 41 H 0.061 0.939 42 H 0.098 0.902 43 H 0.060 0.940 44 H 0.097 0.903 45 H 0.086 0.914 46 H 0.042 0.958 47 H 0.121 0.879 48 H 0.116 0.884 49 H 0.279 0.721 50 H 0.132 0.868 51 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.769 4.329 -28.059 28.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.032 3.968 3 H 0.059 0.941 4 N -0.315 5.315 5 C -0.070 4.070 6 C -0.152 4.152 7 C -0.071 4.071 8 N -0.261 5.261 9 C -0.114 4.114 10 C -0.014 4.014 11 O -0.306 6.306 12 C -0.014 4.014 13 C -0.111 4.111 14 C -0.186 4.186 15 C -0.076 4.076 16 C -0.214 4.214 17 C 0.108 3.892 18 O -0.122 6.122 19 C -0.466 4.466 20 H 0.123 0.877 21 C -0.140 4.140 22 N -0.517 5.517 23 Si 0.731 3.269 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.183 1.183 27 C -0.241 4.241 28 C -0.086 4.086 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.163 0.837 33 H 0.043 0.957 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.052 0.948 39 H 0.060 0.940 40 H 0.110 0.890 41 H 0.079 0.921 42 H 0.116 0.884 43 H 0.078 0.922 44 H 0.115 0.885 45 H 0.104 0.896 46 H 0.060 0.940 47 H 0.139 0.861 48 H 0.134 0.866 49 H 0.090 0.910 50 H 0.150 0.850 51 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.401 3.480 -28.116 28.841 hybrid contribution 1.177 0.741 0.939 1.678 sum -4.223 4.220 -27.177 27.825 Atomic orbital electron populations 1.21768 0.94458 1.02315 1.00452 1.20162 0.95226 0.94510 0.86882 0.94100 1.60581 1.33654 1.32928 1.04361 1.21921 1.00408 0.93876 0.90751 1.21549 1.01990 0.98940 0.92676 1.22098 1.00136 0.95032 0.89813 1.62208 1.19610 1.41480 1.02835 1.22863 0.88621 1.00029 0.99927 1.22688 1.01709 0.93343 0.83658 1.87989 1.27554 1.70977 1.44086 1.22661 0.83490 0.98373 0.96831 1.22788 1.02042 0.95352 0.90968 1.19343 1.09327 0.93838 0.96102 1.20501 0.97107 0.93401 0.96570 1.20256 1.08812 0.99352 0.92955 1.19172 0.92375 0.90951 0.86670 1.83577 1.69057 1.36423 1.23156 1.20765 1.37317 0.92081 0.96398 0.87666 1.24474 0.95018 1.00266 0.94254 1.69647 1.37337 1.36180 1.08539 0.86175 0.79718 0.83632 0.77352 1.19880 1.20771 1.18343 1.21234 1.08383 0.94365 1.00105 1.20642 0.96879 0.98376 0.92681 0.92645 0.93491 0.91966 0.83673 0.95683 0.91113 0.92036 0.90075 0.90498 0.94794 0.93974 0.89025 0.92105 0.88373 0.92171 0.88496 0.89561 0.94004 0.86074 0.86557 0.91040 0.85012 0.87535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.57 9.39 37.16 0.35 -1.23 16 2 C 0.14 1.80 2.81 -68.86 -0.19 1.61 16 3 H 0.04 0.52 7.66 -51.93 -0.40 0.12 16 4 N -0.68 -7.71 5.70 -107.95 -0.61 -8.32 16 5 C 0.06 0.56 5.48 -3.83 -0.02 0.54 16 6 C -0.11 -0.93 5.41 -26.73 -0.14 -1.07 16 7 C 0.06 0.43 4.96 -3.83 -0.02 0.41 16 8 N -0.54 -4.20 4.73 -234.31 -1.11 -5.31 16 9 C 0.01 0.10 5.44 -3.71 -0.02 0.08 16 10 C 0.06 0.46 7.01 37.21 0.26 0.72 16 11 O -0.39 -3.46 10.83 -35.23 -0.38 -3.84 16 12 C 0.06 0.42 7.01 37.21 0.26 0.69 16 13 C 0.02 0.11 5.64 -3.71 -0.02 0.09 16 14 C -0.18 -2.93 4.71 -104.57 -0.49 -3.43 16 15 C -0.06 -0.95 9.00 -39.61 -0.36 -1.30 16 16 C -0.19 -3.79 9.99 -39.40 -0.39 -4.18 16 17 C 0.16 3.66 6.65 -39.11 -0.26 3.40 16 18 O -0.22 -5.70 8.59 0.03 0.00 -5.70 16 19 C -0.39 -10.94 9.95 30.89 0.31 -10.63 16 20 H 0.11 3.01 5.44 -52.48 -0.29 2.73 16 21 C 0.06 1.77 5.49 -17.51 -0.10 1.67 16 22 N -0.88 -25.28 13.96 55.48 0.77 -24.50 16 23 Si 0.91 21.59 28.62 -169.99 -4.86 16.73 16 24 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.26 -6.21 7.11 56.52 0.40 -5.81 16 27 C -0.22 -4.71 9.17 -39.40 -0.36 -5.07 16 28 C -0.07 -1.18 9.66 -39.61 -0.38 -1.56 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.49 7.45 -51.93 -0.39 0.10 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.34 4.04 7.99 -39.29 -0.31 3.73 16 33 H 0.02 0.24 8.06 -51.93 -0.42 -0.18 16 34 H 0.07 0.64 7.44 -51.93 -0.39 0.25 16 35 H 0.06 0.52 6.52 -51.93 -0.34 0.18 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.08 0.53 8.04 -51.93 -0.42 0.11 16 38 H 0.03 0.26 8.12 -51.93 -0.42 -0.16 16 39 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.09 0.66 6.38 -51.93 -0.33 0.33 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.09 0.48 8.09 -51.93 -0.42 0.06 16 46 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.12 1.76 7.72 -52.49 -0.41 1.35 16 48 H 0.12 2.13 8.06 -52.48 -0.42 1.71 16 49 H 0.28 7.42 8.31 -40.82 -0.34 7.08 16 50 H 0.13 2.96 5.64 -52.49 -0.30 2.66 16 51 H 0.11 1.64 8.03 -52.49 -0.42 1.22 16 LS Contribution 403.73 15.07 6.08 6.08 Total: -1.00 -29.52 403.73 -10.30 -39.81 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -8.60 Total: 4.32 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: -1.58 Total: -19.26 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: -0.95 Total: -38.13 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: -0.38 Total: -9.55 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.86 Total: 16.73 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -29.52 -10.30 -39.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192944023.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.514 kcal (2) G-P(sol) polarization free energy of solvation -29.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds