Wall clock time and date at job start Tue Mar 31 2020 19:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47228 * 2 1 4 4 N 1.46900 * 109.47420 * 239.99729 * 2 1 3 5 5 C 1.46899 * 110.99945 * 85.00018 * 4 2 1 6 6 C 1.52999 * 109.47206 * 179.97438 * 5 4 2 7 7 C 1.52998 * 109.47066 * 180.02562 * 6 5 4 8 8 N 1.46899 * 109.46899 * 180.02562 * 7 6 5 9 9 C 1.47022 * 110.99568 * 293.63078 * 8 7 6 10 10 C 1.53099 * 109.25519 * 177.60596 * 9 8 7 11 11 O 1.43023 * 109.25592 * 56.85434 * 10 9 8 12 12 C 1.43016 * 113.73731 * 301.32355 * 11 10 9 13 13 C 1.47012 * 111.00064 * 170.00182 * 8 7 6 14 14 C 1.50707 * 109.47215 * 119.99653 * 2 1 3 15 15 C 1.38302 * 119.93008 * 79.72301 * 14 2 1 16 16 C 1.38097 * 120.06845 * 179.72767 * 15 14 2 17 17 C 1.38880 * 119.92811 * 0.54920 * 16 15 14 18 18 O 1.35756 * 120.06665 * 179.74904 * 17 16 15 19 19 C 1.34831 * 117.00099 * 174.44752 * 18 17 16 20 20 H 1.08006 * 119.99708 * 5.04992 * 19 18 17 21 21 C 1.38652 * 120.00064 * 185.05609 * 19 18 17 22 22 N 1.31562 * 120.00016 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 120.00040 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.46748 * 90.00210 * 23 21 19 25 25 H 1.48495 * 109.46888 * 210.00178 * 23 21 19 26 26 H 1.48493 * 109.46905 * 330.00160 * 23 21 19 27 27 C 1.38877 * 119.86582 * 359.72800 * 17 16 15 28 28 C 1.38095 * 119.92895 * 359.97438 * 27 17 16 29 29 H 1.08995 * 109.47327 * 300.00194 * 1 2 3 30 30 H 1.08994 * 109.46920 * 60.00266 * 1 2 3 31 31 H 1.08994 * 109.46805 * 180.02562 * 1 2 3 32 32 H 1.00903 * 110.99930 * 208.95437 * 4 2 1 33 33 H 1.09005 * 109.46644 * 60.00050 * 5 4 2 34 34 H 1.08996 * 109.47251 * 300.00401 * 5 4 2 35 35 H 1.08996 * 109.47413 * 300.00387 * 6 5 4 36 36 H 1.09006 * 109.46631 * 59.99990 * 6 5 4 37 37 H 1.08996 * 109.46897 * 299.99494 * 7 6 5 38 38 H 1.08993 * 109.47202 * 60.00299 * 7 6 5 39 39 H 1.08997 * 109.50743 * 297.54331 * 9 8 7 40 40 H 1.09004 * 109.50585 * 57.67722 * 9 8 7 41 41 H 1.08994 * 109.51483 * 296.91838 * 10 9 8 42 42 H 1.09001 * 109.54029 * 176.80581 * 10 9 8 43 43 H 1.09004 * 109.50622 * 298.74145 * 12 11 10 44 44 H 1.08998 * 109.54105 * 178.62717 * 12 11 10 45 45 H 1.08995 * 109.50176 * 302.32055 * 13 8 7 46 46 H 1.08990 * 109.50958 * 62.41161 * 13 8 7 47 47 H 1.08001 * 119.96170 * 0.02562 * 15 14 2 48 48 H 1.08004 * 120.03608 * 180.27946 * 16 15 14 49 49 H 0.96997 * 119.99964 * 179.97438 * 22 21 19 50 50 H 1.07996 * 120.03642 * 179.97438 * 27 17 16 51 51 H 1.07999 * 119.96968 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0826 0.2225 -2.3468 6 6 2.5964 -0.5330 -3.5741 7 6 2.6624 0.4202 -4.7690 8 7 3.1552 -0.3053 -5.9474 9 6 4.5531 -0.7218 -5.7631 10 6 5.0064 -1.5238 -6.9859 11 8 4.8285 -0.7306 -8.1626 12 6 3.4785 -0.3081 -8.3735 13 6 3.0097 0.5062 -7.1647 14 6 2.0324 -0.7104 1.2306 15 6 2.0608 -2.0926 1.2661 16 6 2.5259 -2.7464 2.3901 17 6 2.9546 -2.0145 3.4898 18 8 3.4075 -2.6544 4.5981 19 6 3.9152 -1.8870 5.5835 20 1 3.8736 -0.8105 5.5054 21 6 4.4907 -2.4796 6.6971 22 7 4.9866 -1.7307 7.6584 23 14 4.5621 -4.3413 6.8324 24 1 5.8251 -4.8336 6.2259 25 1 4.5134 -4.7358 8.2632 26 1 3.4047 -4.9344 6.1157 27 6 2.9194 -0.6267 3.4532 28 6 2.4591 0.0213 2.3239 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 2.9174 -1.1205 -1.0286 33 1 2.7590 1.0461 -2.1181 34 1 1.0872 0.6162 -2.5525 35 1 3.5918 -0.9264 -3.3681 36 1 1.9203 -1.3569 -3.8029 37 1 1.6671 0.8139 -4.9752 38 1 3.3387 1.2438 -4.5399 39 1 5.1840 0.1600 -5.6519 40 1 4.6332 -1.3425 -4.8706 41 1 4.4106 -2.4330 -7.0663 42 1 6.0589 -1.7867 -6.8798 43 1 2.8382 -1.1820 -8.4941 44 1 3.4254 0.3087 -9.2705 45 1 1.9633 0.7819 -7.2952 46 1 3.6153 1.4079 -7.0755 47 1 1.7235 -2.6612 0.4121 48 1 2.5520 -3.8259 2.4156 49 1 5.3889 -2.1453 8.4376 50 1 3.2517 -0.0548 4.3069 51 1 2.4318 1.1006 2.2946 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192944023.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:17 Heat of formation + Delta-G solvation = -64.718969 kcal Electronic energy + Delta-G solvation = -27760.373740 eV Core-core repulsion = 23852.372586 eV Total energy + Delta-G solvation = -3908.001154 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.99433 -40.54848 -39.22503 -37.68483 -36.62098 -34.49714 -33.68066 -32.14900 -31.86768 -30.82609 -29.49136 -27.91775 -27.25388 -25.07624 -24.80570 -23.78066 -23.20847 -22.03871 -21.39306 -21.15639 -19.72710 -19.10754 -17.64094 -17.23080 -17.15010 -16.70916 -16.56087 -16.19375 -16.00478 -15.80498 -15.67606 -15.58781 -15.44486 -15.25051 -14.88699 -14.66975 -14.42096 -14.17333 -13.94399 -13.83050 -13.48218 -13.32856 -13.09303 -12.96252 -12.84521 -12.66589 -12.51288 -12.37281 -12.34421 -12.11314 -12.03623 -11.95530 -11.65607 -11.59281 -11.34006 -11.28260 -10.90022 -10.66601 -9.80791 -9.42052 -9.33654 -9.00204 -8.50831 -6.23458 0.56318 0.62124 1.31079 1.34987 1.51632 2.27462 2.67072 2.75626 2.95039 3.04678 3.15161 3.29623 3.83508 3.89418 3.95098 4.01026 4.06568 4.16842 4.19261 4.21114 4.27375 4.33355 4.41339 4.45889 4.54393 4.57540 4.59444 4.65070 4.69528 4.73982 4.76214 4.79086 4.82091 4.91502 4.95084 4.97818 5.00965 5.06265 5.22838 5.24845 5.35046 5.38620 5.45467 5.56297 5.70488 5.78845 5.90332 5.93895 5.97819 6.17269 6.19669 6.25399 6.48557 6.83565 7.58168 8.60688 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.018359 B = 0.001751 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.784846 B =15987.952151 C =16894.207694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.144 3.856 3 H 0.050 0.950 4 N -0.684 5.684 5 C 0.064 3.936 6 C -0.103 4.103 7 C 0.061 3.939 8 N -0.545 5.545 9 C 0.015 3.985 10 C 0.061 3.939 11 O -0.409 6.409 12 C 0.060 3.940 13 C 0.017 3.983 14 C -0.156 4.156 15 C -0.047 4.047 16 C -0.192 4.192 17 C 0.120 3.880 18 O -0.245 6.245 19 C -0.399 4.399 20 H 0.080 0.920 21 C 0.010 3.990 22 N -0.923 5.923 23 Si 0.971 3.029 24 H -0.265 1.265 25 H -0.267 1.267 26 H -0.263 1.263 27 C -0.237 4.237 28 C -0.069 4.069 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.343 0.657 33 H 0.026 0.974 34 H 0.078 0.922 35 H 0.058 0.942 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.031 0.969 39 H 0.034 0.966 40 H 0.094 0.906 41 H 0.061 0.939 42 H 0.109 0.891 43 H 0.061 0.939 44 H 0.113 0.887 45 H 0.100 0.900 46 H 0.036 0.964 47 H 0.152 0.848 48 H 0.128 0.872 49 H 0.285 0.715 50 H 0.107 0.893 51 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.122 4.005 -31.185 32.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.035 3.965 3 H 0.068 0.932 4 N -0.316 5.316 5 C -0.066 4.066 6 C -0.141 4.141 7 C -0.067 4.067 8 N -0.270 5.270 9 C -0.113 4.113 10 C -0.015 4.015 11 O -0.328 6.328 12 C -0.017 4.017 13 C -0.111 4.111 14 C -0.157 4.157 15 C -0.065 4.065 16 C -0.211 4.211 17 C 0.071 3.929 18 O -0.153 6.153 19 C -0.476 4.476 20 H 0.098 0.902 21 C -0.189 4.189 22 N -0.564 5.564 23 Si 0.793 3.207 24 H -0.190 1.190 25 H -0.192 1.192 26 H -0.187 1.187 27 C -0.256 4.256 28 C -0.087 4.087 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.161 0.839 33 H 0.044 0.956 34 H 0.097 0.903 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.049 0.951 39 H 0.052 0.948 40 H 0.113 0.887 41 H 0.080 0.920 42 H 0.127 0.873 43 H 0.080 0.920 44 H 0.131 0.869 45 H 0.119 0.881 46 H 0.054 0.946 47 H 0.170 0.830 48 H 0.146 0.854 49 H 0.094 0.906 50 H 0.125 0.875 51 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.776 3.175 -31.290 32.172 hybrid contribution 1.459 1.010 1.556 2.360 sum -5.317 4.185 -29.734 30.494 Atomic orbital electron populations 1.21741 0.93307 1.02292 1.01418 1.20173 0.95983 0.94524 0.85806 0.93220 1.60601 1.33596 1.33248 1.04125 1.21939 1.00961 0.93539 0.90121 1.21418 1.01504 0.98638 0.92524 1.22055 1.00528 0.94643 0.89469 1.62233 1.19602 1.41851 1.03297 1.22847 0.88529 0.99745 1.00165 1.22770 1.02467 0.93118 0.83191 1.87960 1.28856 1.71281 1.44676 1.22813 0.82612 0.98707 0.97524 1.22829 1.02798 0.94914 0.90535 1.19801 1.05605 0.93832 0.96491 1.20836 0.95573 0.93862 0.96238 1.20555 1.07901 1.00093 0.92561 1.19707 0.94117 0.92012 0.87098 1.83519 1.71352 1.36371 1.24060 1.20699 1.37907 0.91419 0.97553 0.90223 1.25288 0.94825 1.04911 0.93863 1.69731 1.39185 1.38011 1.09443 0.85210 0.79592 0.77950 0.77920 1.19042 1.19209 1.18736 1.21236 1.09472 0.94077 1.00833 1.20912 0.96116 0.99859 0.91838 0.92875 0.91488 0.92474 0.83887 0.95570 0.90330 0.92334 0.90822 0.89628 0.95075 0.94820 0.88741 0.92035 0.87336 0.92040 0.86880 0.88130 0.94616 0.83005 0.85449 0.90585 0.87544 0.84996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.58 9.39 71.98 0.68 -1.90 16 2 C 0.14 3.12 2.81 44.17 0.12 3.25 16 3 H 0.05 1.04 7.66 -2.39 -0.02 1.02 16 4 N -0.68 -12.82 5.70 -495.44 -2.82 -15.64 16 5 C 0.06 0.95 5.48 86.30 0.47 1.42 16 6 C -0.10 -1.39 5.41 30.59 0.17 -1.22 16 7 C 0.06 0.76 4.96 86.30 0.43 1.19 16 8 N -0.54 -7.44 4.73 -895.23 -4.23 -11.67 16 9 C 0.02 0.21 5.44 86.31 0.47 0.68 16 10 C 0.06 0.82 7.01 72.02 0.50 1.33 16 11 O -0.41 -6.81 10.83 -148.98 -1.61 -8.42 16 12 C 0.06 0.70 7.01 72.02 0.50 1.21 16 13 C 0.02 0.20 5.64 86.32 0.49 0.69 16 14 C -0.16 -4.51 4.71 -19.83 -0.09 -4.60 16 15 C -0.05 -1.41 9.00 22.25 0.20 -1.21 16 16 C -0.19 -7.26 9.99 22.39 0.22 -7.04 16 17 C 0.12 5.58 6.65 22.58 0.15 5.73 16 18 O -0.25 -13.39 8.59 -22.82 -0.20 -13.59 16 19 C -0.40 -23.65 9.95 67.92 0.68 -22.98 16 20 H 0.08 4.95 5.44 -2.91 -0.02 4.93 16 21 C 0.01 0.55 5.49 84.83 0.47 1.02 16 22 N -0.92 -55.27 13.96 21.61 0.30 -54.97 16 23 Si 0.97 45.57 28.62 68.60 1.96 47.54 16 24 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 25 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 26 H -0.26 -12.33 7.11 99.48 0.71 -11.63 16 27 C -0.24 -10.36 9.17 22.39 0.21 -10.16 16 28 C -0.07 -2.33 9.66 22.25 0.21 -2.12 16 29 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.07 1.10 7.45 -2.39 -0.02 1.08 16 31 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.34 6.79 7.99 -89.69 -0.72 6.08 16 33 H 0.03 0.40 8.06 -2.38 -0.02 0.38 16 34 H 0.08 1.09 7.44 -2.39 -0.02 1.07 16 35 H 0.06 0.84 6.52 -2.39 -0.02 0.82 16 36 H 0.07 1.14 8.14 -2.38 -0.02 1.13 16 37 H 0.09 0.92 8.04 -2.39 -0.02 0.90 16 38 H 0.03 0.41 8.12 -2.39 -0.02 0.39 16 39 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.09 1.21 6.38 -2.39 -0.02 1.19 16 41 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.10 0.86 8.09 -2.39 -0.02 0.84 16 46 H 0.04 0.46 8.14 -2.39 -0.02 0.44 16 47 H 0.15 3.74 7.72 -2.91 -0.02 3.72 16 48 H 0.13 4.48 8.06 -2.91 -0.02 4.46 16 49 H 0.28 15.62 8.31 -92.71 -0.77 14.85 16 50 H 0.11 5.16 5.64 -2.91 -0.02 5.14 16 51 H 0.13 3.78 8.03 -2.91 -0.02 3.76 16 Total: -1.00 -66.44 403.73 -0.53 -66.97 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: 0.19 Total: 24.51 kcal Atomic # 6 Polarization: -40.60 SS G_CDS: 5.88 Total: -34.73 kcal Atomic # 7 Polarization: -75.53 SS G_CDS: -6.75 Total: -82.28 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -1.81 Total: -22.01 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 1.96 Total: 47.54 kcal Total: -66.44 -0.53 -66.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192944023.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.250 kcal (2) G-P(sol) polarization free energy of solvation -66.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds