Wall clock time and date at job start Tue Mar 31 2020 19:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 114.00230 * 2 1 4 4 C 1.52990 * 109.47217 * 179.97438 * 3 2 1 5 5 N 1.46909 * 109.47051 * 65.00249 * 4 3 2 6 6 C 1.48533 * 110.99884 * 307.39260 * 5 4 3 7 7 C 1.54930 * 103.22875 * 200.28273 * 6 5 4 8 8 C 1.54598 * 102.92265 * 37.41472 * 7 6 5 9 9 H 1.08996 * 110.38714 * 97.00517 * 8 7 6 10 10 N 1.46897 * 110.30605 * 219.13060 * 8 7 6 11 11 C 1.46905 * 110.99944 * 270.71541 * 10 8 7 12 12 H 1.08999 * 109.47227 * 34.99657 * 11 10 8 13 13 C 1.53004 * 109.47086 * 275.00496 * 11 10 8 14 14 C 1.50703 * 109.47430 * 155.00478 * 11 10 8 15 15 C 1.38294 * 119.92983 * 219.99985 * 14 11 10 16 16 C 1.38096 * 120.06969 * 179.97438 * 15 14 11 17 17 C 1.38887 * 119.92909 * 359.97438 * 16 15 14 18 18 O 1.35746 * 120.06604 * 180.02562 * 17 16 15 19 19 C 1.34833 * 117.00531 * 5.54199 * 18 17 16 20 20 H 1.07995 * 119.99437 * 354.94399 * 19 18 17 21 21 C 1.38650 * 120.00178 * 174.66237 * 19 18 17 22 22 N 1.31555 * 119.99956 * 0.28234 * 21 19 18 23 23 Si 1.86799 * 120.00030 * 180.27275 * 21 19 18 24 24 H 1.48502 * 109.46727 * 60.00755 * 23 21 19 25 25 H 1.48505 * 109.47357 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47502 * 300.00646 * 23 21 19 27 27 C 1.38871 * 119.86145 * 0.28182 * 17 16 15 28 28 C 1.38107 * 119.92971 * 359.46603 * 27 17 16 29 29 C 1.47899 * 110.99853 * 190.00121 * 5 4 3 30 30 H 1.09005 * 109.46932 * 300.00095 * 1 2 3 31 31 H 1.08995 * 109.47108 * 59.99728 * 1 2 3 32 32 H 1.09003 * 109.46993 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.46746 * 59.99762 * 3 2 1 34 34 H 1.08998 * 109.46586 * 300.00071 * 3 2 1 35 35 H 1.08997 * 109.47265 * 305.00042 * 4 3 2 36 36 H 1.08996 * 109.47242 * 184.99578 * 4 3 2 37 37 H 1.09003 * 110.66942 * 318.71768 * 6 5 4 38 38 H 1.09003 * 110.66821 * 81.84333 * 6 5 4 39 39 H 1.09008 * 110.72114 * 279.05682 * 7 6 5 40 40 H 1.08999 * 110.72689 * 155.77490 * 7 6 5 41 41 H 1.00896 * 111.00377 * 34.66792 * 10 8 7 42 42 H 1.09001 * 109.47128 * 59.99350 * 13 11 10 43 43 H 1.08995 * 109.47150 * 179.97438 * 13 11 10 44 44 H 1.09008 * 109.46954 * 299.99855 * 13 11 10 45 45 H 1.08006 * 119.96631 * 0.02562 * 15 14 11 46 46 H 1.07998 * 120.03684 * 179.97438 * 16 15 14 47 47 H 0.97000 * 120.00014 * 179.97438 * 22 21 19 48 48 H 1.07995 * 120.03647 * 179.71990 * 27 17 16 49 49 H 1.08004 * 119.96417 * 180.23311 * 28 27 17 50 50 H 1.08999 * 109.92287 * 26.48892 * 29 5 4 51 51 H 1.09001 * 110.08116 * 265.28278 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9779 0.5622 -1.2544 6 6 3.2584 -0.7142 -1.4981 7 6 4.1782 -1.4536 -2.5019 8 6 5.5960 -1.0831 -2.0092 9 1 5.9972 -1.8750 -1.3767 10 7 6.4868 -0.8443 -3.1525 11 6 7.1417 -2.0883 -3.5786 12 1 6.4549 -2.9243 -3.4459 13 6 8.3960 -2.3198 -2.7336 14 6 7.5275 -1.9809 -5.0314 15 6 7.3712 -3.0700 -5.8693 16 6 7.7233 -2.9746 -7.2012 17 6 8.2345 -1.7831 -7.6991 18 8 8.5811 -1.6861 -9.0080 19 6 8.2982 -2.7428 -9.7962 20 1 7.8920 -3.6453 -9.3640 21 6 8.5232 -2.6686 -11.1623 22 7 9.0179 -1.5692 -11.6887 23 14 8.1240 -4.1299 -12.2553 24 1 6.6777 -4.4487 -12.1468 25 1 8.4539 -3.7986 -13.6648 26 1 8.9236 -5.3044 -11.8232 27 6 8.3953 -0.6929 -6.8540 28 6 8.0364 -0.7931 -5.5242 29 6 5.4133 0.2108 -1.1945 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.6887 1.8463 0.8899 34 1 1.6887 1.8463 -0.8900 35 1 3.8508 0.5685 0.8427 36 1 3.9785 2.1764 0.0901 37 1 3.1613 -1.2837 -0.5738 38 1 2.2798 -0.5259 -1.9397 39 1 4.0146 -1.0886 -3.5159 40 1 4.0205 -2.5308 -2.4483 41 1 5.9863 -0.4186 -3.9182 42 1 8.1169 -2.3974 -1.6828 43 1 8.8816 -3.2430 -3.0494 44 1 9.0828 -1.4837 -2.8663 45 1 6.9724 -3.9959 -5.4817 46 1 7.6014 -3.8256 -7.8549 47 1 9.1756 -1.5174 -12.6444 48 1 8.7967 0.2335 -7.2372 49 1 8.1576 0.0556 -4.8673 50 1 5.7118 0.0432 -0.1597 51 1 6.0129 1.0108 -1.6288 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271857205.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:59 Heat of formation + Delta-G solvation = -35.996708 kcal Electronic energy + Delta-G solvation = -28471.529989 eV Core-core repulsion = 24564.774326 eV Total energy + Delta-G solvation = -3906.755663 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -39.77770 -39.08118 -38.05897 -37.05203 -35.18947 -32.69525 -32.10954 -30.24833 -29.86377 -29.13789 -27.90895 -26.96550 -26.32752 -25.35659 -22.94032 -22.43584 -21.94575 -20.97617 -20.37492 -19.93560 -17.91589 -17.07937 -16.97533 -16.86262 -16.07685 -15.69717 -15.18175 -14.89365 -14.85761 -14.49261 -14.28155 -14.02743 -13.82527 -13.64144 -13.45755 -13.13035 -12.78982 -12.73651 -12.58883 -12.39306 -12.19562 -12.14482 -12.01873 -11.87222 -11.66090 -11.60304 -11.42340 -11.21284 -11.11873 -11.03399 -10.77413 -10.63926 -10.63246 -10.41395 -10.24054 -9.98531 -9.31604 -8.80686 -8.55661 -8.26778 -8.13529 -7.14770 -6.43243 -4.02163 2.25856 2.33831 3.13845 3.14918 3.17704 3.40197 3.79255 3.98041 4.19877 4.56565 4.58041 4.62681 4.76647 4.86962 4.92865 4.99547 5.04781 5.09910 5.12474 5.20205 5.25854 5.27858 5.35860 5.37062 5.44236 5.48948 5.52912 5.64537 5.71642 5.72442 5.81800 5.82498 5.91791 5.98268 6.05256 6.07720 6.10427 6.26720 6.43074 6.50544 6.72601 6.75409 6.76570 6.86551 6.91748 7.07287 7.13272 7.30285 7.46089 7.47610 7.61304 7.86602 8.01810 9.02291 9.73135 10.74728 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.018117 B = 0.001996 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.124304 B =14024.272108 C =14653.133517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.387 6.387 3 C 0.060 3.940 4 C 0.048 3.952 5 N -0.518 5.518 6 C 0.055 3.945 7 C -0.159 4.159 8 C 0.081 3.919 9 H 0.079 0.921 10 N -0.674 5.674 11 C 0.143 3.857 12 H 0.040 0.960 13 C -0.132 4.132 14 C -0.191 4.191 15 C -0.065 4.065 16 C -0.235 4.235 17 C 0.155 3.845 18 O -0.178 6.178 19 C -0.392 4.392 20 H 0.091 0.909 21 C 0.039 3.961 22 N -0.863 5.863 23 Si 0.940 3.060 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.270 1.270 27 C -0.195 4.195 28 C -0.055 4.055 29 C 0.045 3.955 30 H 0.038 0.962 31 H 0.042 0.958 32 H 0.084 0.916 33 H 0.052 0.948 34 H 0.060 0.940 35 H 0.042 0.958 36 H 0.089 0.911 37 H 0.051 0.949 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.350 0.650 42 H 0.044 0.956 43 H 0.053 0.947 44 H 0.061 0.939 45 H 0.103 0.897 46 H 0.125 0.875 47 H 0.270 0.730 48 H 0.116 0.884 49 H 0.119 0.881 50 H 0.042 0.958 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.874 2.352 23.879 27.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.306 6.306 3 C -0.017 4.017 4 C -0.080 4.080 5 N -0.243 5.243 6 C -0.073 4.073 7 C -0.198 4.198 8 C -0.031 4.031 9 H 0.097 0.903 10 N -0.306 5.306 11 C 0.034 3.966 12 H 0.058 0.942 13 C -0.190 4.190 14 C -0.192 4.192 15 C -0.084 4.084 16 C -0.254 4.254 17 C 0.101 3.899 18 O -0.082 6.082 19 C -0.468 4.468 20 H 0.108 0.892 21 C -0.165 4.165 22 N -0.498 5.498 23 Si 0.765 3.235 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.195 1.195 27 C -0.214 4.214 28 C -0.074 4.074 29 C -0.084 4.084 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.103 0.897 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.060 0.940 36 H 0.108 0.892 37 H 0.069 0.931 38 H 0.101 0.899 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.170 0.830 42 H 0.063 0.937 43 H 0.072 0.928 44 H 0.080 0.920 45 H 0.121 0.879 46 H 0.143 0.857 47 H 0.080 0.920 48 H 0.134 0.866 49 H 0.137 0.863 50 H 0.060 0.940 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.139 3.045 23.481 26.608 hybrid contribution -1.068 -1.608 -0.296 1.953 sum -13.207 1.437 23.184 26.721 Atomic orbital electron populations 1.22725 0.81393 1.02701 0.99908 1.88036 1.19483 1.27804 1.95322 1.22577 0.93496 0.85044 1.00602 1.22341 0.93386 1.00702 0.91577 1.64883 1.03887 1.23929 1.31609 1.23146 0.97316 0.89049 0.97811 1.23346 0.96163 1.00159 1.00169 1.22402 0.90939 0.96296 0.93438 0.90274 1.60679 1.33917 1.25796 1.10225 1.20133 0.94786 0.90253 0.91452 0.94202 1.21787 0.97501 1.01613 0.98085 1.19258 1.10463 0.95434 0.94075 1.20575 0.97985 0.96878 0.92991 1.21110 1.09302 0.99009 0.96008 1.19426 0.91566 0.93009 0.85882 1.83980 1.69193 1.41087 1.13892 1.21264 1.44524 0.92623 0.88400 0.89188 1.25282 0.96629 0.98427 0.96196 1.70029 1.40689 1.26174 1.12874 0.85793 0.79127 0.79866 0.78706 1.19538 1.20283 1.19534 1.20253 1.09789 0.98000 0.93368 1.20499 0.96316 0.96713 0.93823 1.22930 0.89046 0.98103 0.98272 0.94310 0.93973 0.89733 0.92958 0.92220 0.93978 0.89233 0.93092 0.89914 0.90606 0.91415 0.83003 0.93700 0.92765 0.91974 0.87877 0.85698 0.91992 0.86605 0.86260 0.93978 0.89002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.30 6.99 -35.23 -0.25 -3.55 16 3 C 0.06 0.44 5.99 37.15 0.22 0.66 16 4 C 0.05 0.39 5.60 -3.82 -0.02 0.37 16 5 N -0.52 -5.21 5.40 -230.46 -1.24 -6.45 16 6 C 0.05 0.55 4.68 -1.90 -0.01 0.54 16 7 C -0.16 -1.67 6.69 -24.87 -0.17 -1.84 16 8 C 0.08 0.86 3.07 -66.36 -0.20 0.65 16 9 H 0.08 0.84 7.19 -51.93 -0.37 0.47 16 10 N -0.67 -8.28 5.39 -99.53 -0.54 -8.82 16 11 C 0.14 1.92 2.67 -68.86 -0.18 1.74 16 12 H 0.04 0.53 7.69 -51.93 -0.40 0.13 16 13 C -0.13 -1.66 9.38 37.16 0.35 -1.31 16 14 C -0.19 -3.20 4.72 -104.58 -0.49 -3.69 16 15 C -0.07 -1.20 9.66 -39.61 -0.38 -1.58 16 16 C -0.23 -5.12 9.17 -39.39 -0.36 -5.48 16 17 C 0.15 3.77 6.65 -39.11 -0.26 3.51 16 18 O -0.18 -5.13 9.76 0.05 0.00 -5.13 16 19 C -0.39 -11.02 9.49 30.88 0.29 -10.73 16 20 H 0.09 2.34 5.20 -52.49 -0.27 2.07 16 21 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 22 N -0.86 -25.45 13.67 55.48 0.76 -24.69 16 23 Si 0.94 20.63 29.55 -169.99 -5.02 15.61 16 24 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 25 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 26 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 27 C -0.19 -4.14 9.99 -39.40 -0.39 -4.54 16 28 C -0.05 -0.98 9.00 -39.61 -0.36 -1.34 16 29 C 0.04 0.45 6.50 -2.76 -0.02 0.43 16 30 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.04 0.35 7.81 -51.93 -0.41 -0.06 16 36 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.05 0.54 7.19 -51.93 -0.37 0.16 16 38 H 0.08 0.88 7.07 -51.93 -0.37 0.51 16 39 H 0.08 0.89 7.56 -51.92 -0.39 0.50 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.35 4.67 7.35 -39.29 -0.29 4.38 16 42 H 0.04 0.50 7.48 -51.93 -0.39 0.11 16 43 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.06 0.83 8.14 -51.92 -0.42 0.40 16 45 H 0.10 1.63 8.03 -52.48 -0.42 1.21 16 46 H 0.13 2.74 5.64 -52.49 -0.30 2.44 16 47 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 48 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 49 H 0.12 1.90 7.71 -52.48 -0.40 1.49 16 50 H 0.04 0.40 7.57 -51.93 -0.39 0.00 16 51 H 0.09 1.01 7.93 -51.93 -0.41 0.60 16 LS Contribution 402.90 15.07 6.07 6.07 Total: -1.00 -30.17 402.90 -9.74 -39.91 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -8.55 Total: 7.37 kcal Atomic # 6 Polarization: -19.37 SS G_CDS: -0.97 Total: -20.33 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: -1.02 Total: -39.96 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: -0.25 Total: -8.67 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -30.17 -9.74 -39.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271857205.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.917 kcal (2) G-P(sol) polarization free energy of solvation -30.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds