Wall clock time and date at job start Tue Mar 31 2020 19:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 114.00230 * 2 1 4 4 C 1.52990 * 109.47217 * 179.97438 * 3 2 1 5 5 N 1.46909 * 109.47051 * 65.00249 * 4 3 2 6 6 C 1.48533 * 110.99884 * 307.39260 * 5 4 3 7 7 C 1.54930 * 103.22875 * 200.28273 * 6 5 4 8 8 C 1.54598 * 102.92265 * 37.41472 * 7 6 5 9 9 H 1.08996 * 110.38714 * 97.00517 * 8 7 6 10 10 N 1.46897 * 110.30605 * 219.13060 * 8 7 6 11 11 C 1.46905 * 110.99944 * 270.71541 * 10 8 7 12 12 H 1.08999 * 109.47227 * 34.99657 * 11 10 8 13 13 C 1.53004 * 109.47086 * 275.00496 * 11 10 8 14 14 C 1.50703 * 109.47430 * 155.00478 * 11 10 8 15 15 C 1.38294 * 119.92983 * 219.99985 * 14 11 10 16 16 C 1.38096 * 120.06969 * 179.97438 * 15 14 11 17 17 C 1.38887 * 119.92909 * 359.97438 * 16 15 14 18 18 O 1.35746 * 120.06604 * 180.02562 * 17 16 15 19 19 C 1.34833 * 117.00531 * 5.54199 * 18 17 16 20 20 H 1.07995 * 119.99437 * 354.94399 * 19 18 17 21 21 C 1.38650 * 120.00178 * 174.66237 * 19 18 17 22 22 N 1.31555 * 119.99956 * 0.28234 * 21 19 18 23 23 Si 1.86799 * 120.00030 * 180.27275 * 21 19 18 24 24 H 1.48502 * 109.46727 * 60.00755 * 23 21 19 25 25 H 1.48505 * 109.47357 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47502 * 300.00646 * 23 21 19 27 27 C 1.38871 * 119.86145 * 0.28182 * 17 16 15 28 28 C 1.38107 * 119.92971 * 359.46603 * 27 17 16 29 29 C 1.47899 * 110.99853 * 190.00121 * 5 4 3 30 30 H 1.09005 * 109.46932 * 300.00095 * 1 2 3 31 31 H 1.08995 * 109.47108 * 59.99728 * 1 2 3 32 32 H 1.09003 * 109.46993 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.46746 * 59.99762 * 3 2 1 34 34 H 1.08998 * 109.46586 * 300.00071 * 3 2 1 35 35 H 1.08997 * 109.47265 * 305.00042 * 4 3 2 36 36 H 1.08996 * 109.47242 * 184.99578 * 4 3 2 37 37 H 1.09003 * 110.66942 * 318.71768 * 6 5 4 38 38 H 1.09003 * 110.66821 * 81.84333 * 6 5 4 39 39 H 1.09008 * 110.72114 * 279.05682 * 7 6 5 40 40 H 1.08999 * 110.72689 * 155.77490 * 7 6 5 41 41 H 1.00896 * 111.00377 * 34.66792 * 10 8 7 42 42 H 1.09001 * 109.47128 * 59.99350 * 13 11 10 43 43 H 1.08995 * 109.47150 * 179.97438 * 13 11 10 44 44 H 1.09008 * 109.46954 * 299.99855 * 13 11 10 45 45 H 1.08006 * 119.96631 * 0.02562 * 15 14 11 46 46 H 1.07998 * 120.03684 * 179.97438 * 16 15 14 47 47 H 0.97000 * 120.00014 * 179.97438 * 22 21 19 48 48 H 1.07995 * 120.03647 * 179.71990 * 27 17 16 49 49 H 1.08004 * 119.96417 * 180.23311 * 28 27 17 50 50 H 1.08999 * 109.92287 * 26.48892 * 29 5 4 51 51 H 1.09001 * 110.08116 * 265.28278 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9779 0.5622 -1.2544 6 6 3.2584 -0.7142 -1.4981 7 6 4.1782 -1.4536 -2.5019 8 6 5.5960 -1.0831 -2.0092 9 1 5.9972 -1.8750 -1.3767 10 7 6.4868 -0.8443 -3.1525 11 6 7.1417 -2.0883 -3.5786 12 1 6.4549 -2.9243 -3.4459 13 6 8.3960 -2.3198 -2.7336 14 6 7.5275 -1.9809 -5.0314 15 6 7.3712 -3.0700 -5.8693 16 6 7.7233 -2.9746 -7.2012 17 6 8.2345 -1.7831 -7.6991 18 8 8.5811 -1.6861 -9.0080 19 6 8.2982 -2.7428 -9.7962 20 1 7.8920 -3.6453 -9.3640 21 6 8.5232 -2.6686 -11.1623 22 7 9.0179 -1.5692 -11.6887 23 14 8.1240 -4.1299 -12.2553 24 1 6.6777 -4.4487 -12.1468 25 1 8.4539 -3.7986 -13.6648 26 1 8.9236 -5.3044 -11.8232 27 6 8.3953 -0.6929 -6.8540 28 6 8.0364 -0.7931 -5.5242 29 6 5.4133 0.2108 -1.1945 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.6887 1.8463 0.8899 34 1 1.6887 1.8463 -0.8900 35 1 3.8508 0.5685 0.8427 36 1 3.9785 2.1764 0.0901 37 1 3.1613 -1.2837 -0.5738 38 1 2.2798 -0.5259 -1.9397 39 1 4.0146 -1.0886 -3.5159 40 1 4.0205 -2.5308 -2.4483 41 1 5.9863 -0.4186 -3.9182 42 1 8.1169 -2.3974 -1.6828 43 1 8.8816 -3.2430 -3.0494 44 1 9.0828 -1.4837 -2.8663 45 1 6.9724 -3.9959 -5.4817 46 1 7.6014 -3.8256 -7.8549 47 1 9.1756 -1.5174 -12.6444 48 1 8.7967 0.2335 -7.2372 49 1 8.1576 0.0556 -4.8673 50 1 5.7118 0.0432 -0.1597 51 1 6.0129 1.0108 -1.6288 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271857205.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:58 Heat of formation + Delta-G solvation = -56.108186 kcal Electronic energy + Delta-G solvation = -28472.402088 eV Core-core repulsion = 24564.774326 eV Total energy + Delta-G solvation = -3907.627762 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.94355 -40.37922 -39.04436 -38.30485 -36.39668 -34.31004 -33.40867 -31.81963 -30.94449 -29.85842 -29.33603 -27.73584 -27.33308 -26.93531 -23.88885 -23.65825 -23.46365 -21.75090 -21.40295 -21.22822 -19.75658 -18.84015 -17.59669 -17.56848 -17.14464 -16.74704 -16.35815 -16.18144 -15.77792 -15.66019 -15.50460 -15.44003 -15.23979 -14.99629 -14.52554 -14.43185 -14.13986 -13.91209 -13.55931 -13.54498 -13.47721 -13.25561 -12.96789 -12.93253 -12.71352 -12.60601 -12.51130 -12.43057 -12.26154 -12.16099 -12.12720 -11.96287 -11.70667 -11.60964 -11.50209 -11.16762 -10.77058 -10.53762 -9.75578 -9.32008 -9.23547 -8.89377 -8.46162 -6.14375 0.62055 0.70550 1.34792 1.45649 1.51171 2.18301 2.82344 2.88769 3.05585 3.16284 3.27401 3.54057 3.78742 3.81746 3.93438 4.11578 4.12345 4.24294 4.25584 4.34639 4.40012 4.45572 4.46607 4.52944 4.57672 4.61487 4.64019 4.71781 4.75725 4.77523 4.79667 4.88725 4.89110 4.94360 4.99817 5.02339 5.10955 5.14807 5.20262 5.21871 5.23128 5.32605 5.47081 5.59812 5.72900 5.76285 5.98062 6.03915 6.14499 6.22940 6.23839 6.31459 6.50491 6.98329 7.79978 8.76865 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.018117 B = 0.001996 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.124304 B =14024.272108 C =14653.133517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.407 6.407 3 C 0.060 3.940 4 C 0.047 3.953 5 N -0.531 5.531 6 C 0.065 3.935 7 C -0.156 4.156 8 C 0.084 3.916 9 H 0.088 0.912 10 N -0.674 5.674 11 C 0.147 3.853 12 H 0.053 0.947 13 C -0.129 4.129 14 C -0.162 4.162 15 C -0.064 4.064 16 C -0.243 4.243 17 C 0.113 3.887 18 O -0.233 6.233 19 C -0.413 4.413 20 H 0.101 0.899 21 C -0.024 4.024 22 N -0.921 5.921 23 Si 1.019 2.981 24 H -0.258 1.258 25 H -0.272 1.272 26 H -0.257 1.257 27 C -0.206 4.206 28 C -0.045 4.045 29 C 0.049 3.951 30 H 0.050 0.950 31 H 0.043 0.957 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.054 0.946 35 H 0.042 0.958 36 H 0.100 0.900 37 H 0.049 0.951 38 H 0.075 0.925 39 H 0.062 0.938 40 H 0.073 0.927 41 H 0.344 0.656 42 H 0.065 0.935 43 H 0.054 0.946 44 H 0.053 0.947 45 H 0.138 0.862 46 H 0.118 0.882 47 H 0.272 0.728 48 H 0.110 0.890 49 H 0.145 0.855 50 H 0.052 0.948 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.234 1.094 26.972 30.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.327 6.327 3 C -0.016 4.016 4 C -0.081 4.081 5 N -0.256 5.256 6 C -0.063 4.063 7 C -0.196 4.196 8 C -0.027 4.027 9 H 0.106 0.894 10 N -0.305 5.305 11 C 0.038 3.962 12 H 0.071 0.929 13 C -0.187 4.187 14 C -0.163 4.163 15 C -0.082 4.082 16 C -0.262 4.262 17 C 0.063 3.937 18 O -0.140 6.140 19 C -0.490 4.490 20 H 0.118 0.882 21 C -0.222 4.222 22 N -0.559 5.559 23 Si 0.838 3.162 24 H -0.182 1.182 25 H -0.196 1.196 26 H -0.181 1.181 27 C -0.225 4.225 28 C -0.063 4.063 29 C -0.079 4.079 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.109 0.891 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.119 0.881 37 H 0.067 0.933 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.163 0.837 42 H 0.084 0.916 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.155 0.845 46 H 0.135 0.865 47 H 0.081 0.919 48 H 0.128 0.872 49 H 0.163 0.837 50 H 0.070 0.930 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -13.516 1.788 26.649 29.934 hybrid contribution -0.740 -1.126 -0.862 1.599 sum -14.256 0.662 25.787 29.473 Atomic orbital electron populations 1.22838 0.80277 1.03381 1.00529 1.87993 1.20785 1.28431 1.95460 1.22599 0.93019 0.84853 1.01164 1.22416 0.93982 1.01043 0.90633 1.64866 1.03877 1.23885 1.32973 1.23000 0.96858 0.89033 0.97395 1.23305 0.96280 1.00540 0.99475 1.22427 0.90540 0.96918 0.92790 0.89392 1.60701 1.34459 1.24966 1.10379 1.20150 0.95806 0.91350 0.88870 0.92912 1.21757 0.96535 1.01310 0.99117 1.19738 1.06618 0.94063 0.95898 1.20928 0.97022 0.98770 0.91503 1.21213 1.09447 0.97907 0.97618 1.19953 0.93563 0.95042 0.85117 1.83943 1.72105 1.42081 1.15868 1.21767 1.44867 0.93156 0.89162 0.88173 1.26599 0.96248 1.01838 0.97484 1.70181 1.43399 1.29014 1.13294 0.84653 0.79490 0.75816 0.76283 1.18212 1.19631 1.18136 1.20480 1.10117 0.97282 0.94612 1.20764 0.94991 0.98112 0.92462 1.22855 0.89045 0.97418 0.98594 0.93171 0.93847 0.89105 0.91210 0.92803 0.93957 0.88149 0.93321 0.90680 0.91968 0.90788 0.83655 0.91614 0.92702 0.92742 0.84461 0.86451 0.91868 0.87160 0.83691 0.92987 0.89875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.52 16 2 O -0.41 -6.25 6.99 -148.98 -1.04 -7.29 16 3 C 0.06 0.78 5.99 71.98 0.43 1.21 16 4 C 0.05 0.67 5.60 86.30 0.48 1.15 16 5 N -0.53 -9.59 5.40 -883.04 -4.77 -14.35 16 6 C 0.06 1.19 4.68 86.65 0.41 1.60 16 7 C -0.16 -2.92 6.69 31.80 0.21 -2.71 16 8 C 0.08 1.53 3.07 45.80 0.14 1.67 16 9 H 0.09 1.49 7.19 -2.39 -0.02 1.48 16 10 N -0.67 -14.40 5.39 -468.80 -2.53 -16.93 16 11 C 0.15 3.41 2.67 44.17 0.12 3.53 16 12 H 0.05 1.15 7.69 -2.39 -0.02 1.13 16 13 C -0.13 -2.74 9.38 71.98 0.67 -2.07 16 14 C -0.16 -5.00 4.72 -19.84 -0.09 -5.09 16 15 C -0.06 -2.19 9.66 22.25 0.21 -1.98 16 16 C -0.24 -10.65 9.17 22.39 0.21 -10.44 16 17 C 0.11 5.74 6.65 22.58 0.15 5.89 16 18 O -0.23 -14.28 9.76 -22.72 -0.22 -14.50 16 19 C -0.41 -24.39 9.49 67.92 0.64 -23.74 16 20 H 0.10 5.41 5.20 -2.91 -0.02 5.40 16 21 C -0.02 -1.40 5.49 84.83 0.47 -0.93 16 22 N -0.92 -57.20 13.67 21.61 0.30 -56.90 16 23 Si 1.02 43.28 29.55 68.60 2.03 45.31 16 24 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 25 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 26 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 27 C -0.21 -8.94 9.99 22.39 0.22 -8.71 16 28 C -0.05 -1.54 9.00 22.25 0.20 -1.34 16 29 C 0.05 0.86 6.50 86.45 0.56 1.42 16 30 H 0.05 0.40 8.14 -2.38 -0.02 0.38 16 31 H 0.04 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.04 0.60 7.81 -2.39 -0.02 0.58 16 36 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.05 0.92 7.19 -2.39 -0.02 0.91 16 38 H 0.07 1.50 7.07 -2.39 -0.02 1.48 16 39 H 0.06 1.35 7.56 -2.38 -0.02 1.33 16 40 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.34 8.26 7.35 -89.70 -0.66 7.60 16 42 H 0.06 1.16 7.48 -2.39 -0.02 1.14 16 43 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.05 1.25 8.14 -2.38 -0.02 1.24 16 45 H 0.14 3.81 8.03 -2.91 -0.02 3.78 16 46 H 0.12 5.25 5.64 -2.91 -0.02 5.23 16 47 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 48 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 49 H 0.15 4.24 7.71 -2.91 -0.02 4.21 16 50 H 0.05 0.82 7.57 -2.39 -0.02 0.80 16 51 H 0.08 1.62 7.93 -2.39 -0.02 1.61 16 Total: -1.00 -69.60 402.90 0.31 -69.29 By element: Atomic # 1 Polarization: 34.16 SS G_CDS: 0.25 Total: 34.42 kcal Atomic # 6 Polarization: -45.32 SS G_CDS: 6.29 Total: -39.03 kcal Atomic # 7 Polarization: -81.19 SS G_CDS: -7.00 Total: -88.18 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: -1.26 Total: -21.79 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -69.60 0.31 -69.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271857205.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.180 kcal (2) G-P(sol) polarization free energy of solvation -69.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds