Wall clock time and date at job start Tue Mar 31 2020 17:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.87142 * 2 1 4 4 O 1.43742 * 109.87959 * 121.00968 * 2 1 3 5 5 C 1.44383 * 106.97467 * 145.94119 * 4 2 1 6 6 C 1.54997 * 103.48985 * 319.93638 * 5 4 2 7 7 C 1.54107 * 109.88092 * 238.84206 * 2 1 3 8 8 O 1.42899 * 110.48824 * 119.86493 * 7 2 1 9 9 C 1.53005 * 110.48328 * 357.22383 * 7 2 1 10 10 N 1.46901 * 109.46603 * 185.00124 * 9 7 2 11 11 C 1.46904 * 110.99475 * 179.97438 * 10 9 7 12 12 C 1.50700 * 109.46978 * 179.97438 * 11 10 9 13 13 C 1.38286 * 119.92804 * 269.73019 * 12 11 10 14 14 C 1.38108 * 120.07179 * 179.72183 * 13 12 11 15 15 C 1.38906 * 119.92649 * 0.54875 * 14 13 12 16 16 N 1.39672 * 120.07438 * 179.74565 * 15 14 13 17 17 C 1.46504 * 120.00230 * 179.97438 * 16 15 14 18 18 C 1.46505 * 120.00015 * 359.97438 * 16 15 14 19 19 C 1.50698 * 109.46925 * 90.00141 * 18 16 15 20 20 H 1.07996 * 120.00126 * 359.97438 * 19 18 16 21 21 C 1.37878 * 119.99571 * 180.02562 * 19 18 16 22 22 N 1.31519 * 120.00319 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99811 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47337 * 59.99531 * 23 21 19 25 25 H 1.48495 * 109.47119 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47000 * 299.99450 * 23 21 19 27 27 C 1.38907 * 119.85248 * 359.72685 * 15 14 13 28 28 C 1.38111 * 119.92371 * 359.97438 * 27 15 14 29 29 H 1.09002 * 109.47153 * 300.44256 * 1 2 3 30 30 H 1.09001 * 109.46832 * 180.44447 * 1 2 3 31 31 H 1.09004 * 109.47261 * 60.44429 * 1 2 3 32 32 H 1.08992 * 110.62177 * 78.43718 * 5 4 2 33 33 H 1.09005 * 110.61746 * 201.28502 * 5 4 2 34 34 H 1.08999 * 110.90793 * 155.22275 * 6 5 4 35 35 H 1.09004 * 110.90860 * 278.79496 * 6 5 4 36 36 H 0.96700 * 114.00183 * 179.97438 * 8 7 2 37 37 H 1.09003 * 109.46615 * 304.99628 * 9 7 2 38 38 H 1.08994 * 109.47268 * 64.99859 * 9 7 2 39 39 H 1.00897 * 111.00211 * 303.94777 * 10 9 7 40 40 H 1.09000 * 109.47507 * 299.99726 * 11 10 9 41 41 H 1.09000 * 109.47269 * 60.00271 * 11 10 9 42 42 H 1.07994 * 119.95945 * 359.97438 * 13 12 11 43 43 H 1.08004 * 120.03381 * 180.27412 * 14 13 12 44 44 H 1.08997 * 109.47374 * 89.99923 * 17 16 15 45 45 H 1.09003 * 109.46997 * 210.00215 * 17 16 15 46 46 H 1.09000 * 109.46845 * 329.99882 * 17 16 15 47 47 H 1.09000 * 109.46941 * 210.00172 * 18 16 15 48 48 H 1.09005 * 109.47020 * 329.99839 * 18 16 15 49 49 H 0.96999 * 119.99695 * 179.97438 * 22 21 19 50 50 H 1.08000 * 120.04395 * 179.97438 * 27 15 14 51 51 H 1.07998 * 119.96137 * 179.97438 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0188 -0.6964 1.1586 5 6 3.2380 -1.3631 0.7665 6 6 2.9196 -1.8923 -0.6551 7 6 2.0540 -0.7498 -1.2402 8 8 2.8510 0.1175 -2.0493 9 6 0.8898 -1.3216 -2.0517 10 7 1.4159 -2.1308 -3.1592 11 6 0.3239 -2.6978 -3.9618 12 6 0.9008 -3.5190 -5.0860 13 6 1.1721 -2.9255 -6.3052 14 6 1.7062 -3.6739 -7.3357 15 6 1.9602 -5.0269 -7.1501 16 7 2.4954 -5.7879 -8.1919 17 6 2.7632 -7.2146 -7.9942 18 6 2.7889 -5.1594 -9.4823 19 6 4.2019 -4.6355 -9.4760 20 1 4.8193 -4.7580 -8.5984 21 6 4.7060 -3.9988 -10.5902 22 7 3.9539 -3.8492 -11.6588 23 14 6.4572 -3.3487 -10.5822 24 1 7.4011 -4.4718 -10.3529 25 1 6.7547 -2.7118 -11.8902 26 1 6.6080 -2.3460 -9.4972 27 6 1.6812 -5.6212 -5.9260 28 6 1.1529 -4.8656 -4.8977 29 1 -0.3633 0.5207 0.8860 30 1 -0.3633 -1.0277 0.0080 31 1 -0.3634 0.5069 -0.8940 32 1 4.0685 -0.6579 0.7364 33 1 3.4600 -2.1872 1.4445 34 1 3.8332 -2.0240 -1.2348 35 1 2.3545 -2.8231 -0.6062 36 1 3.2073 -0.3031 -2.8438 37 1 0.2703 -1.9460 -1.4079 38 1 0.2898 -0.5044 -2.4518 39 1 2.0451 -1.5911 -3.7343 40 1 -0.2993 -3.3318 -3.3311 41 1 -0.2804 -1.8904 -4.3752 42 1 0.9699 -1.8746 -6.4503 43 1 1.9220 -3.2087 -8.2862 44 1 1.8805 -7.7916 -8.2697 45 1 3.6041 -7.5164 -8.6187 46 1 3.0044 -7.3973 -6.9470 47 1 2.6779 -5.8955 -10.2785 48 1 2.0963 -4.3348 -9.6507 49 1 4.3085 -3.4010 -12.4425 50 1 1.8771 -6.6730 -5.7784 51 1 0.9354 -5.3272 -3.9459 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278703986.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:33 Heat of formation + Delta-G solvation = -58.718441 kcal Electronic energy + Delta-G solvation = -28817.423737 eV Core-core repulsion = 24909.682786 eV Total energy + Delta-G solvation = -3907.740951 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.55017 -39.07927 -37.16654 -36.14376 -34.74703 -32.80440 -32.41496 -31.35758 -30.49135 -29.82812 -27.84373 -26.83629 -25.55847 -24.56782 -23.55194 -22.62733 -22.17416 -21.50647 -20.07881 -19.60093 -17.54119 -16.96095 -16.58196 -16.34196 -16.26654 -15.75414 -15.58589 -15.07883 -14.88634 -14.60164 -14.28859 -13.98670 -13.76809 -13.51641 -13.38388 -13.24790 -12.93148 -12.80402 -12.76905 -12.52826 -12.26684 -12.10022 -11.87949 -11.79459 -11.71067 -11.45103 -11.44344 -11.27639 -11.01813 -10.91029 -10.70743 -10.62595 -10.31573 -10.23665 -9.95871 -9.93292 -9.79672 -8.91769 -8.54648 -8.53533 -8.31731 -6.51367 -6.05716 -4.21248 2.05833 2.15695 3.25264 3.29987 3.32981 3.52854 3.69424 3.90089 4.11104 4.31851 4.37750 4.40668 4.55540 4.71431 4.85095 4.92481 4.98539 5.15103 5.16972 5.17976 5.25067 5.28381 5.36542 5.38770 5.48671 5.54879 5.57819 5.68093 5.71903 5.76439 5.78889 5.82145 5.85520 5.96865 6.04073 6.24179 6.34146 6.38515 6.53383 6.59477 6.77565 6.92316 6.98984 7.12803 7.16223 7.23598 7.30888 7.34009 7.55094 7.77150 8.11464 8.22192 8.44084 8.87481 9.45687 10.92047 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.013895 B = 0.002394 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.573628 B =11690.687738 C =12631.021180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.087 3.913 3 H 0.079 0.921 4 O -0.372 6.372 5 C 0.045 3.955 6 C -0.165 4.165 7 C 0.105 3.895 8 O -0.555 6.555 9 C 0.036 3.964 10 N -0.684 5.684 11 C 0.118 3.882 12 C -0.176 4.176 13 C -0.067 4.067 14 C -0.187 4.187 15 C 0.243 3.757 16 N -0.615 5.615 17 C 0.098 3.902 18 C 0.249 3.751 19 C -0.532 4.532 20 H 0.059 0.941 21 C 0.062 3.938 22 N -0.895 5.895 23 Si 0.897 3.103 24 H -0.277 1.277 25 H -0.286 1.286 26 H -0.275 1.275 27 C -0.223 4.223 28 C -0.050 4.050 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.382 0.618 37 H 0.088 0.912 38 H 0.041 0.959 39 H 0.338 0.662 40 H 0.071 0.929 41 H 0.031 0.969 42 H 0.107 0.893 43 H 0.131 0.869 44 H 0.036 0.964 45 H 0.067 0.933 46 H 0.055 0.945 47 H 0.030 0.970 48 H 0.036 0.964 49 H 0.265 0.735 50 H 0.113 0.887 51 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.857 3.465 20.363 21.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.029 3.971 3 H 0.097 0.903 4 O -0.292 6.292 5 C -0.032 4.032 6 C -0.202 4.202 7 C 0.064 3.936 8 O -0.362 6.362 9 C -0.094 4.094 10 N -0.316 5.316 11 C -0.010 4.010 12 C -0.179 4.179 13 C -0.086 4.086 14 C -0.210 4.210 15 C 0.136 3.864 16 N -0.320 5.320 17 C -0.046 4.046 18 C 0.129 3.871 19 C -0.571 4.571 20 H 0.077 0.923 21 C -0.141 4.141 22 N -0.534 5.534 23 Si 0.724 3.276 24 H -0.202 1.202 25 H -0.212 1.212 26 H -0.201 1.201 27 C -0.246 4.246 28 C -0.069 4.069 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.111 0.889 34 H 0.106 0.894 35 H 0.109 0.891 36 H 0.231 0.769 37 H 0.106 0.894 38 H 0.059 0.941 39 H 0.156 0.844 40 H 0.090 0.910 41 H 0.049 0.951 42 H 0.125 0.875 43 H 0.149 0.851 44 H 0.054 0.946 45 H 0.086 0.914 46 H 0.074 0.926 47 H 0.048 0.952 48 H 0.053 0.947 49 H 0.074 0.926 50 H 0.131 0.869 51 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.945 3.262 21.021 22.377 hybrid contribution 1.127 0.705 -1.354 1.898 sum -5.818 3.967 19.667 20.889 Atomic orbital electron populations 1.22039 0.93120 1.03177 1.02751 1.22553 0.95023 0.96262 0.83299 0.90287 1.88902 1.39963 1.67875 1.32435 1.23576 0.87536 0.96375 0.95668 1.23629 1.01166 0.99146 0.96301 1.22571 0.90548 0.89341 0.91166 1.86508 1.69584 1.40644 1.39512 1.22759 0.96114 0.96259 0.94230 1.60604 1.19127 1.38567 1.13315 1.20627 0.91515 0.96342 0.92498 1.19132 1.09724 0.94414 0.94646 1.20655 0.97137 0.98358 0.92486 1.20850 1.06360 0.92961 1.00826 1.17966 0.89855 0.90950 0.87669 1.47124 1.64749 1.07345 1.12810 1.21482 0.99958 0.82231 1.00960 1.19287 0.95997 0.93458 0.78337 1.21531 0.98332 1.37405 0.99839 0.92310 1.24965 0.97989 0.95818 0.95280 1.69920 1.36594 1.42886 1.03997 0.86575 0.84493 0.79249 0.77256 1.20230 1.21180 1.20077 1.20579 1.10615 0.99963 0.93459 1.20482 0.96388 0.93056 0.97019 0.91587 0.91324 0.90835 0.92049 0.88857 0.89436 0.89063 0.76855 0.89425 0.94079 0.84372 0.91011 0.95114 0.87479 0.85100 0.94578 0.91425 0.92643 0.95195 0.94652 0.92558 0.86894 0.87346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 8.41 37.16 0.31 -0.87 16 2 C 0.09 0.83 3.88 -26.15 -0.10 0.73 16 3 H 0.08 0.81 7.97 -51.93 -0.41 0.40 16 4 O -0.37 -4.01 11.19 -35.23 -0.39 -4.41 16 5 C 0.04 0.40 7.72 38.21 0.29 0.70 16 6 C -0.16 -1.48 6.12 -24.72 -0.15 -1.63 16 7 C 0.11 0.97 1.17 -89.09 -0.10 0.87 16 8 O -0.56 -5.57 12.97 -35.23 -0.46 -6.03 16 9 C 0.04 0.32 3.60 -3.82 -0.01 0.30 16 10 N -0.68 -6.96 6.13 -115.05 -0.71 -7.66 16 11 C 0.12 1.33 5.81 -4.97 -0.03 1.30 16 12 C -0.18 -2.53 5.39 -104.59 -0.56 -3.09 16 13 C -0.07 -1.08 9.69 -39.61 -0.38 -1.46 16 14 C -0.19 -3.65 9.21 -39.38 -0.36 -4.02 16 15 C 0.24 4.78 6.55 -83.79 -0.55 4.23 16 16 N -0.61 -12.91 2.99 -181.00 -0.54 -13.45 16 17 C 0.10 1.68 10.19 59.85 0.61 2.29 16 18 C 0.25 6.14 4.91 -5.19 -0.03 6.11 16 19 C -0.53 -14.30 9.39 -34.44 -0.32 -14.62 16 20 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 21 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 22 N -0.90 -25.35 13.29 55.43 0.74 -24.61 16 23 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 C -0.22 -3.76 9.21 -39.38 -0.36 -4.12 16 28 C -0.05 -0.75 9.69 -39.61 -0.38 -1.13 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.51 6.53 -51.93 -0.34 0.17 16 31 H 0.07 0.51 7.01 -51.93 -0.36 0.14 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.09 0.78 8.08 -51.93 -0.42 0.36 16 35 H 0.09 0.86 7.87 -51.93 -0.41 0.45 16 36 H 0.38 3.05 7.58 45.56 0.35 3.40 16 37 H 0.09 0.76 6.51 -51.93 -0.34 0.42 16 38 H 0.04 0.37 7.04 -51.93 -0.37 0.00 16 39 H 0.34 3.44 7.24 -39.29 -0.28 3.16 16 40 H 0.07 0.76 8.08 -51.93 -0.42 0.34 16 41 H 0.03 0.33 8.08 -51.93 -0.42 -0.08 16 42 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 43 H 0.13 2.84 6.14 -52.48 -0.32 2.52 16 44 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 46 H 0.05 0.84 6.20 -51.93 -0.32 0.52 16 47 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 48 H 0.04 0.92 6.20 -51.93 -0.32 0.60 16 49 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 50 H 0.11 1.73 6.14 -52.49 -0.32 1.41 16 51 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 401.45 15.07 6.05 6.05 Total: -1.00 -29.42 401.45 -10.20 -39.62 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -7.64 Total: 7.30 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: -2.23 Total: -12.82 kcal Atomic # 7 Polarization: -45.21 SS G_CDS: -0.51 Total: -45.72 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: -0.85 Total: -10.43 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -29.42 -10.20 -39.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278703986.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.099 kcal (2) G-P(sol) polarization free energy of solvation -29.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds