Wall clock time and date at job start Tue Mar 31 2020 17:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.87142 * 2 1 4 4 O 1.43742 * 109.87959 * 121.00968 * 2 1 3 5 5 C 1.44383 * 106.97467 * 145.94119 * 4 2 1 6 6 C 1.54997 * 103.48985 * 319.93638 * 5 4 2 7 7 C 1.54107 * 109.88092 * 238.84206 * 2 1 3 8 8 O 1.42899 * 110.48824 * 119.86493 * 7 2 1 9 9 C 1.53005 * 110.48328 * 357.22383 * 7 2 1 10 10 N 1.46901 * 109.46603 * 185.00124 * 9 7 2 11 11 C 1.46904 * 110.99475 * 179.97438 * 10 9 7 12 12 C 1.50700 * 109.46978 * 179.97438 * 11 10 9 13 13 C 1.38286 * 119.92804 * 269.73019 * 12 11 10 14 14 C 1.38108 * 120.07179 * 179.72183 * 13 12 11 15 15 C 1.38906 * 119.92649 * 0.54875 * 14 13 12 16 16 N 1.39672 * 120.07438 * 179.74565 * 15 14 13 17 17 C 1.46504 * 120.00230 * 179.97438 * 16 15 14 18 18 C 1.46505 * 120.00015 * 359.97438 * 16 15 14 19 19 C 1.50698 * 109.46925 * 90.00141 * 18 16 15 20 20 H 1.07996 * 120.00126 * 359.97438 * 19 18 16 21 21 C 1.37878 * 119.99571 * 180.02562 * 19 18 16 22 22 N 1.31519 * 120.00319 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99811 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47337 * 59.99531 * 23 21 19 25 25 H 1.48495 * 109.47119 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47000 * 299.99450 * 23 21 19 27 27 C 1.38907 * 119.85248 * 359.72685 * 15 14 13 28 28 C 1.38111 * 119.92371 * 359.97438 * 27 15 14 29 29 H 1.09002 * 109.47153 * 300.44256 * 1 2 3 30 30 H 1.09001 * 109.46832 * 180.44447 * 1 2 3 31 31 H 1.09004 * 109.47261 * 60.44429 * 1 2 3 32 32 H 1.08992 * 110.62177 * 78.43718 * 5 4 2 33 33 H 1.09005 * 110.61746 * 201.28502 * 5 4 2 34 34 H 1.08999 * 110.90793 * 155.22275 * 6 5 4 35 35 H 1.09004 * 110.90860 * 278.79496 * 6 5 4 36 36 H 0.96700 * 114.00183 * 179.97438 * 8 7 2 37 37 H 1.09003 * 109.46615 * 304.99628 * 9 7 2 38 38 H 1.08994 * 109.47268 * 64.99859 * 9 7 2 39 39 H 1.00897 * 111.00211 * 303.94777 * 10 9 7 40 40 H 1.09000 * 109.47507 * 299.99726 * 11 10 9 41 41 H 1.09000 * 109.47269 * 60.00271 * 11 10 9 42 42 H 1.07994 * 119.95945 * 359.97438 * 13 12 11 43 43 H 1.08004 * 120.03381 * 180.27412 * 14 13 12 44 44 H 1.08997 * 109.47374 * 89.99923 * 17 16 15 45 45 H 1.09003 * 109.46997 * 210.00215 * 17 16 15 46 46 H 1.09000 * 109.46845 * 329.99882 * 17 16 15 47 47 H 1.09000 * 109.46941 * 210.00172 * 18 16 15 48 48 H 1.09005 * 109.47020 * 329.99839 * 18 16 15 49 49 H 0.96999 * 119.99695 * 179.97438 * 22 21 19 50 50 H 1.08000 * 120.04395 * 179.97438 * 27 15 14 51 51 H 1.07998 * 119.96137 * 179.97438 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0188 -0.6964 1.1586 5 6 3.2380 -1.3631 0.7665 6 6 2.9196 -1.8923 -0.6551 7 6 2.0540 -0.7498 -1.2402 8 8 2.8510 0.1175 -2.0493 9 6 0.8898 -1.3216 -2.0517 10 7 1.4159 -2.1308 -3.1592 11 6 0.3239 -2.6978 -3.9618 12 6 0.9008 -3.5190 -5.0860 13 6 1.1721 -2.9255 -6.3052 14 6 1.7062 -3.6739 -7.3357 15 6 1.9602 -5.0269 -7.1501 16 7 2.4954 -5.7879 -8.1919 17 6 2.7632 -7.2146 -7.9942 18 6 2.7889 -5.1594 -9.4823 19 6 4.2019 -4.6355 -9.4760 20 1 4.8193 -4.7580 -8.5984 21 6 4.7060 -3.9988 -10.5902 22 7 3.9539 -3.8492 -11.6588 23 14 6.4572 -3.3487 -10.5822 24 1 7.4011 -4.4718 -10.3529 25 1 6.7547 -2.7118 -11.8902 26 1 6.6080 -2.3460 -9.4972 27 6 1.6812 -5.6212 -5.9260 28 6 1.1529 -4.8656 -4.8977 29 1 -0.3633 0.5207 0.8860 30 1 -0.3633 -1.0277 0.0080 31 1 -0.3634 0.5069 -0.8940 32 1 4.0685 -0.6579 0.7364 33 1 3.4600 -2.1872 1.4445 34 1 3.8332 -2.0240 -1.2348 35 1 2.3545 -2.8231 -0.6062 36 1 3.2073 -0.3031 -2.8438 37 1 0.2703 -1.9460 -1.4079 38 1 0.2898 -0.5044 -2.4518 39 1 2.0451 -1.5911 -3.7343 40 1 -0.2993 -3.3318 -3.3311 41 1 -0.2804 -1.8904 -4.3752 42 1 0.9699 -1.8746 -6.4503 43 1 1.9220 -3.2087 -8.2862 44 1 1.8805 -7.7916 -8.2697 45 1 3.6041 -7.5164 -8.6187 46 1 3.0044 -7.3973 -6.9470 47 1 2.6779 -5.8955 -10.2785 48 1 2.0963 -4.3348 -9.6507 49 1 4.3085 -3.4010 -12.4425 50 1 1.8771 -6.6730 -5.7784 51 1 0.9354 -5.3272 -3.9459 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278703986.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:31 Heat of formation + Delta-G solvation = -78.516266 kcal Electronic energy + Delta-G solvation = -28818.282235 eV Core-core repulsion = 24909.682786 eV Total energy + Delta-G solvation = -3908.599449 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.27733 -40.41519 -38.09962 -37.32496 -35.81117 -34.70912 -33.21979 -32.12719 -31.86937 -31.00107 -29.60936 -27.84002 -26.64865 -25.79466 -24.72312 -23.58132 -23.26544 -22.91304 -21.08636 -20.69053 -18.63206 -18.37481 -18.06585 -17.45283 -17.02214 -16.86283 -16.46025 -16.36465 -16.04607 -15.76704 -15.52058 -15.29501 -15.04496 -14.61999 -14.36201 -14.29288 -14.26299 -14.05051 -13.69200 -13.43833 -13.28687 -13.19274 -13.08948 -13.07212 -12.95601 -12.66785 -12.54059 -12.50574 -12.47508 -12.18501 -12.15875 -11.93270 -11.76915 -11.42562 -11.36831 -10.97138 -10.69725 -10.64120 -10.40686 -9.65182 -9.34548 -8.36080 -7.79827 -6.37612 0.72636 0.85216 1.37590 1.38954 1.47382 2.34145 2.64138 2.83738 2.94950 3.03152 3.06180 3.35498 3.64890 3.70936 3.97416 4.07849 4.11958 4.16903 4.25273 4.28820 4.33129 4.41484 4.47849 4.56501 4.61977 4.65567 4.68409 4.71928 4.72741 4.77828 4.84364 4.87990 4.93060 5.02487 5.05669 5.08681 5.12707 5.14350 5.20717 5.25760 5.34777 5.59729 5.68194 5.70929 5.83254 5.92582 6.02364 6.07143 6.24014 6.37355 6.50509 6.66696 6.82697 6.94700 7.34337 8.82984 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.013895 B = 0.002394 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.573628 B =11690.687738 C =12631.021180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.081 3.919 3 H 0.067 0.933 4 O -0.389 6.389 5 C 0.041 3.959 6 C -0.160 4.160 7 C 0.106 3.894 8 O -0.568 6.568 9 C 0.044 3.956 10 N -0.685 5.685 11 C 0.123 3.877 12 C -0.158 4.158 13 C -0.067 4.067 14 C -0.217 4.217 15 C 0.213 3.787 16 N -0.633 5.633 17 C 0.098 3.902 18 C 0.267 3.733 19 C -0.541 4.541 20 H 0.049 0.951 21 C 0.013 3.987 22 N -0.927 5.927 23 Si 0.961 3.039 24 H -0.269 1.269 25 H -0.280 1.280 26 H -0.272 1.272 27 C -0.219 4.219 28 C -0.047 4.047 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.059 0.941 33 H 0.108 0.892 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.389 0.611 37 H 0.096 0.904 38 H 0.045 0.955 39 H 0.337 0.663 40 H 0.088 0.912 41 H 0.039 0.961 42 H 0.123 0.877 43 H 0.093 0.907 44 H 0.052 0.948 45 H 0.055 0.945 46 H 0.078 0.922 47 H 0.008 0.992 48 H 0.011 0.989 49 H 0.267 0.733 50 H 0.131 0.869 51 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.133 3.356 22.986 24.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.023 3.977 3 H 0.085 0.915 4 O -0.308 6.308 5 C -0.035 4.035 6 C -0.198 4.198 7 C 0.065 3.935 8 O -0.377 6.377 9 C -0.085 4.085 10 N -0.318 5.318 11 C -0.005 4.005 12 C -0.161 4.161 13 C -0.086 4.086 14 C -0.239 4.239 15 C 0.108 3.892 16 N -0.340 5.340 17 C -0.045 4.045 18 C 0.145 3.855 19 C -0.579 4.579 20 H 0.068 0.932 21 C -0.187 4.187 22 N -0.567 5.567 23 Si 0.786 3.214 24 H -0.194 1.194 25 H -0.205 1.205 26 H -0.197 1.197 27 C -0.242 4.242 28 C -0.066 4.066 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.077 0.923 33 H 0.126 0.874 34 H 0.105 0.895 35 H 0.109 0.891 36 H 0.240 0.760 37 H 0.114 0.886 38 H 0.063 0.937 39 H 0.156 0.844 40 H 0.106 0.894 41 H 0.057 0.943 42 H 0.141 0.859 43 H 0.112 0.888 44 H 0.070 0.930 45 H 0.074 0.926 46 H 0.097 0.903 47 H 0.026 0.974 48 H 0.029 0.971 49 H 0.076 0.924 50 H 0.148 0.852 51 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -7.234 3.146 23.683 24.962 hybrid contribution 1.142 0.794 -2.041 2.470 sum -6.092 3.939 21.642 22.826 Atomic orbital electron populations 1.22036 0.91678 1.03693 1.03354 1.22646 0.96222 0.95599 0.83219 0.91500 1.88886 1.40602 1.68118 1.33242 1.23695 0.86991 0.96719 0.96113 1.23588 1.01072 0.98951 0.96216 1.22578 0.90665 0.89240 0.91022 1.86496 1.69838 1.41311 1.40048 1.22714 0.95883 0.96270 0.93672 1.60553 1.18777 1.39087 1.13337 1.20607 0.91720 0.96484 0.91734 1.19478 1.07307 0.94704 0.94619 1.20831 0.96409 0.98977 0.92388 1.20754 1.08920 0.93742 1.00527 1.18241 0.91375 0.91085 0.88530 1.46973 1.66424 1.08707 1.11930 1.21597 1.00279 0.80447 1.02180 1.18762 0.94530 0.92124 0.80071 1.21737 0.99220 1.37486 0.99498 0.93249 1.25782 1.02003 0.95997 0.94888 1.70032 1.38385 1.43672 1.04590 0.85565 0.79681 0.78758 0.77440 1.19427 1.20492 1.19686 1.20815 1.09874 1.01002 0.92472 1.20875 0.94963 0.93132 0.97619 0.91342 0.90764 0.89955 0.92253 0.87398 0.89494 0.89054 0.76007 0.88614 0.93671 0.84428 0.89365 0.94318 0.85922 0.88847 0.92972 0.92609 0.90310 0.97411 0.97128 0.92393 0.85162 0.84157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 8.41 71.98 0.61 -1.39 16 2 C 0.08 1.43 3.88 30.97 0.12 1.55 16 3 H 0.07 1.32 7.97 -2.39 -0.02 1.30 16 4 O -0.39 -7.80 11.19 -148.98 -1.67 -9.47 16 5 C 0.04 0.67 7.72 72.67 0.56 1.23 16 6 C -0.16 -2.55 6.12 31.89 0.20 -2.36 16 7 C 0.11 1.74 1.17 -9.80 -0.01 1.73 16 8 O -0.57 -10.51 12.97 -148.98 -1.93 -12.45 16 9 C 0.04 0.64 3.60 86.30 0.31 0.95 16 10 N -0.69 -11.69 6.13 -517.92 -3.17 -14.87 16 11 C 0.12 2.29 5.81 85.56 0.50 2.79 16 12 C -0.16 -4.10 5.39 -19.84 -0.11 -4.21 16 13 C -0.07 -2.10 9.69 22.25 0.22 -1.88 16 14 C -0.22 -8.73 9.21 22.40 0.21 -8.53 16 15 C 0.21 8.44 6.55 38.21 0.25 8.69 16 16 N -0.63 -27.35 2.99 -726.55 -2.17 -29.52 16 17 C 0.10 3.36 10.19 127.77 1.30 4.66 16 18 C 0.27 13.93 4.91 85.63 0.42 14.35 16 19 C -0.54 -30.14 9.39 25.60 0.24 -29.90 16 20 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 21 C 0.01 0.70 5.46 84.65 0.46 1.16 16 22 N -0.93 -54.19 13.29 21.45 0.28 -53.90 16 23 Si 0.96 43.69 29.54 68.60 2.03 45.72 16 24 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 25 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 26 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 27 C -0.22 -6.94 9.21 22.40 0.21 -6.74 16 28 C -0.05 -1.24 9.69 22.25 0.22 -1.02 16 29 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.07 0.90 6.53 -2.39 -0.02 0.88 16 31 H 0.08 0.93 7.01 -2.38 -0.02 0.91 16 32 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.11 1.40 8.14 -2.38 -0.02 1.38 16 34 H 0.09 1.39 8.08 -2.39 -0.02 1.37 16 35 H 0.09 1.46 7.87 -2.39 -0.02 1.44 16 36 H 0.39 5.61 7.58 -74.06 -0.56 5.05 16 37 H 0.10 1.30 6.51 -2.39 -0.02 1.28 16 38 H 0.05 0.65 7.04 -2.39 -0.02 0.64 16 39 H 0.34 5.97 7.24 -89.70 -0.65 5.32 16 40 H 0.09 1.44 8.08 -2.39 -0.02 1.42 16 41 H 0.04 0.69 8.08 -2.39 -0.02 0.67 16 42 H 0.12 3.37 8.06 -2.91 -0.02 3.34 16 43 H 0.09 4.41 6.14 -2.91 -0.02 4.39 16 44 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.06 2.00 8.07 -2.39 -0.02 1.98 16 46 H 0.08 2.28 6.20 -2.39 -0.01 2.27 16 47 H 0.01 0.43 8.07 -2.39 -0.02 0.42 16 48 H 0.01 0.61 6.20 -2.38 -0.01 0.59 16 49 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 50 H 0.13 3.61 6.14 -2.91 -0.02 3.60 16 51 H 0.14 2.89 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -65.16 401.45 -1.22 -66.37 By element: Atomic # 1 Polarization: 27.29 SS G_CDS: -0.27 Total: 27.02 kcal Atomic # 6 Polarization: -24.59 SS G_CDS: 5.69 Total: -18.90 kcal Atomic # 7 Polarization: -93.23 SS G_CDS: -5.06 Total: -98.30 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -3.60 Total: -21.91 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -65.16 -1.22 -66.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278703986.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.142 kcal (2) G-P(sol) polarization free energy of solvation -65.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds