Wall clock time and date at job start Tue Mar 31 2020 17:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.99659 * 2 1 4 4 O 1.43747 * 109.87786 * 238.91103 * 2 1 3 5 5 C 1.44375 * 106.97523 * 214.06753 * 4 2 1 6 6 C 1.54992 * 103.49282 * 40.06101 * 5 4 2 7 7 C 1.54105 * 109.87497 * 121.08352 * 2 1 3 8 8 O 1.42898 * 110.59822 * 240.17941 * 7 2 1 9 9 C 1.52998 * 110.48846 * 2.77551 * 7 2 1 10 10 N 1.46908 * 109.46973 * 176.22357 * 9 7 2 11 11 C 1.46898 * 110.99818 * 180.02562 * 10 9 7 12 12 C 1.50700 * 109.46954 * 179.97438 * 11 10 9 13 13 C 1.38285 * 119.92357 * 89.99629 * 12 11 10 14 14 C 1.38108 * 120.07295 * 179.97438 * 13 12 11 15 15 C 1.38906 * 119.92409 * 0.02562 * 14 13 12 16 16 N 1.39682 * 120.07555 * 179.97438 * 15 14 13 17 17 C 1.46494 * 120.00143 * 179.97438 * 16 15 14 18 18 C 1.46503 * 119.99664 * 359.97438 * 16 15 14 19 19 C 1.50697 * 109.47234 * 89.99937 * 18 16 15 20 20 H 1.07999 * 119.99965 * 359.97438 * 19 18 16 21 21 C 1.37880 * 119.99835 * 180.02562 * 19 18 16 22 22 N 1.31505 * 119.99966 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99784 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46986 * 59.99748 * 23 21 19 25 25 H 1.48503 * 109.46784 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47049 * 299.99687 * 23 21 19 27 27 C 1.38910 * 119.85487 * 359.97118 * 15 14 13 28 28 C 1.38110 * 119.92148 * 0.02725 * 27 15 14 29 29 H 1.09007 * 109.46599 * 298.92473 * 1 2 3 30 30 H 1.08997 * 109.46884 * 58.91349 * 1 2 3 31 31 H 1.08996 * 109.47476 * 178.91968 * 1 2 3 32 32 H 1.09002 * 110.62047 * 281.55584 * 5 4 2 33 33 H 1.09001 * 110.62078 * 158.56078 * 5 4 2 34 34 H 1.09000 * 110.91091 * 204.78020 * 6 5 4 35 35 H 1.09003 * 110.93959 * 81.19187 * 6 5 4 36 36 H 0.96705 * 113.99533 * 181.92042 * 8 7 2 37 37 H 1.08994 * 109.47395 * 56.22404 * 9 7 2 38 38 H 1.08999 * 109.46793 * 296.21578 * 9 7 2 39 39 H 1.00905 * 110.99278 * 303.95065 * 10 9 7 40 40 H 1.08991 * 109.47517 * 59.99582 * 11 10 9 41 41 H 1.09010 * 109.46895 * 299.99344 * 11 10 9 42 42 H 1.08006 * 119.96774 * 359.72622 * 13 12 11 43 43 H 1.08002 * 120.03508 * 179.97438 * 14 13 12 44 44 H 1.09003 * 109.47065 * 90.00118 * 17 16 15 45 45 H 1.09000 * 109.47537 * 210.00469 * 17 16 15 46 46 H 1.09006 * 109.47356 * 330.00303 * 17 16 15 47 47 H 1.09002 * 109.46606 * 210.00168 * 18 16 15 48 48 H 1.09006 * 109.46846 * 329.99505 * 18 16 15 49 49 H 0.97000 * 120.00194 * 180.02562 * 22 21 19 50 50 H 1.07994 * 120.04361 * 180.02562 * 27 15 14 51 51 H 1.07997 * 119.96347 * 179.97438 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 8 2.0188 -0.6980 -1.1577 5 6 3.2378 -1.3643 -0.7646 6 6 2.9194 -1.8915 0.6576 7 6 2.0539 -0.7482 1.2412 8 8 2.8504 0.1183 2.0516 9 6 0.8897 -1.3189 2.0534 10 7 1.4158 -2.1026 3.1792 11 6 0.3239 -2.6678 3.9829 12 6 0.9009 -3.4636 5.1252 13 6 1.1616 -2.8453 6.3344 14 6 1.6899 -3.5717 7.3835 15 6 1.9599 -4.9248 7.2228 16 7 2.4948 -5.6624 8.2816 17 6 2.7783 -7.0894 8.1105 18 6 2.7721 -5.0089 9.5631 19 6 1.5547 -5.0988 10.4467 20 1 0.6634 -5.5930 10.0893 21 6 1.5785 -4.5493 11.7110 22 7 2.6637 -3.9472 12.1460 23 14 0.0692 -4.6602 12.8061 24 1 -0.2679 -6.0871 13.0413 25 1 0.3505 -3.9978 14.1051 26 1 -1.0745 -3.9842 12.1426 27 6 1.6968 -5.5428 6.0069 28 6 1.1684 -4.8104 4.9619 29 1 -0.3633 0.4971 0.8996 30 1 -0.3633 0.5306 -0.8801 31 1 -0.3634 -1.0274 -0.0194 32 1 4.0685 -0.6591 -0.7356 33 1 3.4583 -2.1910 -1.4399 34 1 3.8330 -2.0225 1.2376 35 1 2.3540 -2.8223 0.6106 36 1 3.2295 -0.3106 2.8310 37 1 0.2824 -1.9614 1.4160 38 1 0.2775 -0.5016 2.4345 39 1 2.0387 -2.8274 2.8553 40 1 -0.2871 -3.3197 3.3586 41 1 -0.2927 -1.8601 4.3774 42 1 0.9556 -1.7922 6.4573 43 1 1.8937 -3.0881 8.3274 44 1 3.7980 -7.2162 7.7468 45 1 2.6680 -7.5991 9.0676 46 1 2.0800 -7.5148 7.3897 47 1 3.6118 -5.5051 10.0497 48 1 3.0194 -3.9613 9.3907 49 1 2.6806 -3.5609 13.0356 50 1 1.9051 -6.5947 5.8788 51 1 0.9640 -5.2902 4.0162 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278703992.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:40 Heat of formation + Delta-G solvation = -59.428724 kcal Electronic energy + Delta-G solvation = -28693.894421 eV Core-core repulsion = 24786.122669 eV Total energy + Delta-G solvation = -3907.771751 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.59437 -39.07855 -37.08942 -36.12562 -34.77789 -32.79425 -32.41896 -31.42996 -30.48810 -29.80692 -27.84071 -26.85291 -25.54318 -24.59084 -23.68850 -22.73670 -22.03028 -21.57588 -20.05057 -19.58863 -17.57547 -16.84096 -16.52777 -16.39439 -16.24474 -15.76482 -15.68224 -15.12415 -14.89628 -14.54193 -14.34553 -14.01599 -13.77421 -13.50051 -13.39777 -13.35545 -12.94612 -12.88098 -12.77673 -12.55308 -12.17695 -12.11632 -11.87797 -11.82015 -11.73130 -11.51833 -11.45116 -11.27315 -11.05079 -10.94326 -10.70167 -10.64277 -10.29896 -10.18547 -10.01339 -9.92489 -9.80295 -8.91194 -8.55976 -8.52922 -8.31628 -6.51024 -6.04883 -4.20161 2.06364 2.15269 3.26037 3.30710 3.33744 3.46513 3.73934 3.90671 4.10936 4.17259 4.38191 4.38839 4.53695 4.72209 4.75160 4.87813 4.96592 5.08783 5.18648 5.19450 5.21355 5.22761 5.31467 5.35986 5.43411 5.51033 5.52674 5.55069 5.64730 5.69155 5.74947 5.79420 5.84230 5.98719 6.04091 6.23474 6.34785 6.39476 6.48730 6.58853 6.77185 6.90993 6.98334 7.11554 7.21832 7.25114 7.33797 7.48494 7.55673 7.78079 8.12361 8.22705 8.44405 8.88337 9.46685 10.93157 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.020427 B = 0.002087 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.401320 B =13410.904836 C =13863.508347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.086 3.914 3 H 0.081 0.919 4 O -0.373 6.373 5 C 0.050 3.950 6 C -0.184 4.184 7 C 0.111 3.889 8 O -0.550 6.550 9 C 0.035 3.965 10 N -0.686 5.686 11 C 0.118 3.882 12 C -0.175 4.175 13 C -0.050 4.050 14 C -0.188 4.188 15 C 0.243 3.757 16 N -0.615 5.615 17 C 0.098 3.902 18 C 0.249 3.751 19 C -0.533 4.533 20 H 0.058 0.942 21 C 0.062 3.938 22 N -0.895 5.895 23 Si 0.897 3.103 24 H -0.277 1.277 25 H -0.286 1.286 26 H -0.275 1.275 27 C -0.222 4.222 28 C -0.068 4.068 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.391 0.609 37 H 0.043 0.957 38 H 0.085 0.915 39 H 0.339 0.661 40 H 0.029 0.971 41 H 0.073 0.927 42 H 0.112 0.888 43 H 0.132 0.868 44 H 0.036 0.964 45 H 0.067 0.933 46 H 0.054 0.946 47 H 0.030 0.970 48 H 0.036 0.964 49 H 0.265 0.735 50 H 0.112 0.888 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.079 3.369 -23.178 23.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.028 3.972 3 H 0.099 0.901 4 O -0.292 6.292 5 C -0.027 4.027 6 C -0.222 4.222 7 C 0.069 3.931 8 O -0.358 6.358 9 C -0.094 4.094 10 N -0.318 5.318 11 C -0.010 4.010 12 C -0.178 4.178 13 C -0.069 4.069 14 C -0.211 4.211 15 C 0.136 3.864 16 N -0.320 5.320 17 C -0.046 4.046 18 C 0.129 3.871 19 C -0.572 4.572 20 H 0.077 0.923 21 C -0.141 4.141 22 N -0.533 5.533 23 Si 0.724 3.276 24 H -0.203 1.203 25 H -0.212 1.212 26 H -0.201 1.201 27 C -0.246 4.246 28 C -0.087 4.087 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.100 0.900 36 H 0.241 0.759 37 H 0.061 0.939 38 H 0.103 0.897 39 H 0.158 0.842 40 H 0.047 0.953 41 H 0.092 0.908 42 H 0.130 0.870 43 H 0.150 0.850 44 H 0.054 0.946 45 H 0.086 0.914 46 H 0.073 0.927 47 H 0.048 0.952 48 H 0.054 0.946 49 H 0.075 0.925 50 H 0.130 0.870 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.088 4.314 -23.054 23.479 hybrid contribution -0.812 -1.319 0.888 1.786 sum -1.900 2.995 -22.166 22.448 Atomic orbital electron populations 1.22037 0.93061 1.03113 1.02877 1.22593 0.95090 0.96404 0.83161 0.90070 1.88908 1.39832 1.67812 1.32653 1.23493 0.87814 0.96446 0.94922 1.23832 1.01494 0.99140 0.97773 1.22452 0.90422 0.89309 0.90960 1.86419 1.68491 1.39679 1.41167 1.22772 0.96210 0.98290 0.92152 1.60539 1.19673 1.29384 1.22234 1.20632 0.91484 0.96424 0.92471 1.19135 1.09585 0.93807 0.95309 1.20644 0.95894 0.98526 0.91852 1.20910 1.06541 0.93111 1.00493 1.17970 0.90012 0.91149 0.87310 1.47125 1.65195 1.07614 1.12095 1.21476 0.98731 0.82692 1.01712 1.19291 0.96246 0.93487 0.78054 1.21527 0.99511 1.37017 0.99097 0.92340 1.24962 0.96313 0.94983 0.97796 1.69913 1.27401 1.37128 1.18884 0.86576 0.83088 0.78322 0.79590 1.20257 1.21161 1.20090 1.20517 1.10861 0.99627 0.93552 1.20495 0.97646 0.93379 0.97203 0.90605 0.91600 0.91499 0.91733 0.88860 0.89091 0.90018 0.75936 0.93884 0.89683 0.84237 0.95275 0.90818 0.86987 0.85038 0.94594 0.91422 0.92716 0.95196 0.94580 0.92548 0.86957 0.87835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 8.41 37.16 0.31 -0.85 16 2 C 0.09 0.79 3.88 -26.15 -0.10 0.69 16 3 H 0.08 0.80 7.97 -51.93 -0.41 0.39 16 4 O -0.37 -3.80 11.19 -35.23 -0.39 -4.19 16 5 C 0.05 0.40 7.72 38.21 0.29 0.69 16 6 C -0.18 -1.41 5.49 -24.72 -0.14 -1.55 16 7 C 0.11 0.97 1.17 -89.09 -0.10 0.87 16 8 O -0.55 -5.61 12.98 -35.23 -0.46 -6.06 16 9 C 0.04 0.31 3.62 -3.82 -0.01 0.29 16 10 N -0.69 -6.79 6.00 -115.06 -0.69 -7.48 16 11 C 0.12 1.34 5.81 -4.98 -0.03 1.31 16 12 C -0.18 -2.53 5.39 -104.59 -0.56 -3.10 16 13 C -0.05 -0.82 9.69 -39.61 -0.38 -1.21 16 14 C -0.19 -3.71 9.21 -39.38 -0.36 -4.07 16 15 C 0.24 4.79 6.55 -83.78 -0.55 4.24 16 16 N -0.61 -12.92 2.99 -181.00 -0.54 -13.46 16 17 C 0.10 1.68 10.19 59.84 0.61 2.29 16 18 C 0.25 6.16 4.91 -5.19 -0.03 6.14 16 19 C -0.53 -14.37 9.39 -34.44 -0.32 -14.70 16 20 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 21 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 22 N -0.89 -25.42 13.28 55.43 0.74 -24.68 16 23 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 C -0.22 -3.71 9.21 -39.38 -0.36 -4.07 16 28 C -0.07 -0.99 9.69 -39.61 -0.38 -1.37 16 29 H 0.08 0.52 6.93 -51.93 -0.36 0.16 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.49 6.61 -51.93 -0.34 0.15 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.09 0.64 8.08 -51.93 -0.42 0.22 16 35 H 0.08 0.59 7.69 -51.93 -0.40 0.19 16 36 H 0.39 3.46 8.62 45.56 0.39 3.86 16 37 H 0.04 0.36 6.60 -51.93 -0.34 0.02 16 38 H 0.08 0.78 6.95 -51.93 -0.36 0.42 16 39 H 0.34 3.24 7.59 -39.29 -0.30 2.94 16 40 H 0.03 0.31 8.08 -51.93 -0.42 -0.11 16 41 H 0.07 0.84 8.09 -51.92 -0.42 0.42 16 42 H 0.11 1.70 8.06 -52.48 -0.42 1.27 16 43 H 0.13 2.89 6.14 -52.49 -0.32 2.57 16 44 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 46 H 0.05 0.83 6.20 -51.93 -0.32 0.51 16 47 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 48 H 0.04 0.94 6.20 -51.93 -0.32 0.62 16 49 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 50 H 0.11 1.70 6.14 -52.49 -0.32 1.37 16 51 H 0.10 1.25 8.06 -52.49 -0.42 0.82 16 LS Contribution 401.92 15.07 6.06 6.06 Total: -1.00 -29.36 401.92 -10.12 -39.48 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -7.59 Total: 7.03 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: -2.22 Total: -12.80 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: -0.49 Total: -45.63 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: -0.85 Total: -10.26 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -29.36 -10.12 -39.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278703992.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.946 kcal (2) G-P(sol) polarization free energy of solvation -29.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds