Wall clock time and date at job start Tue Mar 31 2020 17:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.99659 * 2 1 4 4 O 1.43747 * 109.87786 * 238.91103 * 2 1 3 5 5 C 1.44375 * 106.97523 * 214.06753 * 4 2 1 6 6 C 1.54992 * 103.49282 * 40.06101 * 5 4 2 7 7 C 1.54105 * 109.87497 * 121.08352 * 2 1 3 8 8 O 1.42898 * 110.59822 * 240.17941 * 7 2 1 9 9 C 1.52998 * 110.48846 * 2.77551 * 7 2 1 10 10 N 1.46908 * 109.46973 * 176.22357 * 9 7 2 11 11 C 1.46898 * 110.99818 * 180.02562 * 10 9 7 12 12 C 1.50700 * 109.46954 * 179.97438 * 11 10 9 13 13 C 1.38285 * 119.92357 * 89.99629 * 12 11 10 14 14 C 1.38108 * 120.07295 * 179.97438 * 13 12 11 15 15 C 1.38906 * 119.92409 * 0.02562 * 14 13 12 16 16 N 1.39682 * 120.07555 * 179.97438 * 15 14 13 17 17 C 1.46494 * 120.00143 * 179.97438 * 16 15 14 18 18 C 1.46503 * 119.99664 * 359.97438 * 16 15 14 19 19 C 1.50697 * 109.47234 * 89.99937 * 18 16 15 20 20 H 1.07999 * 119.99965 * 359.97438 * 19 18 16 21 21 C 1.37880 * 119.99835 * 180.02562 * 19 18 16 22 22 N 1.31505 * 119.99966 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99784 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46986 * 59.99748 * 23 21 19 25 25 H 1.48503 * 109.46784 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47049 * 299.99687 * 23 21 19 27 27 C 1.38910 * 119.85487 * 359.97118 * 15 14 13 28 28 C 1.38110 * 119.92148 * 0.02725 * 27 15 14 29 29 H 1.09007 * 109.46599 * 298.92473 * 1 2 3 30 30 H 1.08997 * 109.46884 * 58.91349 * 1 2 3 31 31 H 1.08996 * 109.47476 * 178.91968 * 1 2 3 32 32 H 1.09002 * 110.62047 * 281.55584 * 5 4 2 33 33 H 1.09001 * 110.62078 * 158.56078 * 5 4 2 34 34 H 1.09000 * 110.91091 * 204.78020 * 6 5 4 35 35 H 1.09003 * 110.93959 * 81.19187 * 6 5 4 36 36 H 0.96705 * 113.99533 * 181.92042 * 8 7 2 37 37 H 1.08994 * 109.47395 * 56.22404 * 9 7 2 38 38 H 1.08999 * 109.46793 * 296.21578 * 9 7 2 39 39 H 1.00905 * 110.99278 * 303.95065 * 10 9 7 40 40 H 1.08991 * 109.47517 * 59.99582 * 11 10 9 41 41 H 1.09010 * 109.46895 * 299.99344 * 11 10 9 42 42 H 1.08006 * 119.96774 * 359.72622 * 13 12 11 43 43 H 1.08002 * 120.03508 * 179.97438 * 14 13 12 44 44 H 1.09003 * 109.47065 * 90.00118 * 17 16 15 45 45 H 1.09000 * 109.47537 * 210.00469 * 17 16 15 46 46 H 1.09006 * 109.47356 * 330.00303 * 17 16 15 47 47 H 1.09002 * 109.46606 * 210.00168 * 18 16 15 48 48 H 1.09006 * 109.46846 * 329.99505 * 18 16 15 49 49 H 0.97000 * 120.00194 * 180.02562 * 22 21 19 50 50 H 1.07994 * 120.04361 * 180.02562 * 27 15 14 51 51 H 1.07997 * 119.96347 * 179.97438 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 8 2.0188 -0.6980 -1.1577 5 6 3.2378 -1.3643 -0.7646 6 6 2.9194 -1.8915 0.6576 7 6 2.0539 -0.7482 1.2412 8 8 2.8504 0.1183 2.0516 9 6 0.8897 -1.3189 2.0534 10 7 1.4158 -2.1026 3.1792 11 6 0.3239 -2.6678 3.9829 12 6 0.9009 -3.4636 5.1252 13 6 1.1616 -2.8453 6.3344 14 6 1.6899 -3.5717 7.3835 15 6 1.9599 -4.9248 7.2228 16 7 2.4948 -5.6624 8.2816 17 6 2.7783 -7.0894 8.1105 18 6 2.7721 -5.0089 9.5631 19 6 1.5547 -5.0988 10.4467 20 1 0.6634 -5.5930 10.0893 21 6 1.5785 -4.5493 11.7110 22 7 2.6637 -3.9472 12.1460 23 14 0.0692 -4.6602 12.8061 24 1 -0.2679 -6.0871 13.0413 25 1 0.3505 -3.9978 14.1051 26 1 -1.0745 -3.9842 12.1426 27 6 1.6968 -5.5428 6.0069 28 6 1.1684 -4.8104 4.9619 29 1 -0.3633 0.4971 0.8996 30 1 -0.3633 0.5306 -0.8801 31 1 -0.3634 -1.0274 -0.0194 32 1 4.0685 -0.6591 -0.7356 33 1 3.4583 -2.1910 -1.4399 34 1 3.8330 -2.0225 1.2376 35 1 2.3540 -2.8223 0.6106 36 1 3.2295 -0.3106 2.8310 37 1 0.2824 -1.9614 1.4160 38 1 0.2775 -0.5016 2.4345 39 1 2.0387 -2.8274 2.8553 40 1 -0.2871 -3.3197 3.3586 41 1 -0.2927 -1.8601 4.3774 42 1 0.9556 -1.7922 6.4573 43 1 1.8937 -3.0881 8.3274 44 1 3.7980 -7.2162 7.7468 45 1 2.6680 -7.5991 9.0676 46 1 2.0800 -7.5148 7.3897 47 1 3.6118 -5.5051 10.0497 48 1 3.0194 -3.9613 9.3907 49 1 2.6806 -3.5609 13.0356 50 1 1.9051 -6.5947 5.8788 51 1 0.9640 -5.2902 4.0162 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278703992.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:39 Heat of formation + Delta-G solvation = -79.444220 kcal Electronic energy + Delta-G solvation = -28694.762358 eV Core-core repulsion = 24786.122669 eV Total energy + Delta-G solvation = -3908.639688 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.27952 -40.41562 -38.04006 -37.26219 -35.84169 -34.71448 -33.18860 -32.16741 -31.87104 -30.94937 -29.61130 -27.84062 -26.62079 -25.78795 -24.82175 -23.64714 -23.15522 -22.97776 -21.06459 -20.65332 -18.63458 -18.35669 -18.05524 -17.19768 -17.04327 -16.92932 -16.51314 -16.36720 -15.94353 -15.82602 -15.56886 -15.28828 -15.04560 -14.61925 -14.37780 -14.29219 -14.21764 -14.06408 -13.83756 -13.39906 -13.28432 -13.17827 -13.08588 -13.02574 -12.94803 -12.67900 -12.52902 -12.50709 -12.47174 -12.25114 -12.12940 -11.96548 -11.75303 -11.42611 -11.38933 -10.88973 -10.71104 -10.64245 -10.40488 -9.65230 -9.33022 -8.35987 -7.79802 -6.37528 0.72918 0.84751 1.37105 1.38888 1.47182 2.34120 2.64298 2.82744 2.96842 3.06183 3.08617 3.36473 3.54896 3.74299 4.02542 4.09315 4.10621 4.15169 4.24296 4.25833 4.33078 4.44079 4.45457 4.50996 4.63189 4.66328 4.67155 4.73006 4.74165 4.78972 4.83022 4.88365 4.91820 4.94280 5.02466 5.05478 5.06245 5.13803 5.21392 5.25525 5.34342 5.59904 5.67085 5.70878 5.83250 5.92622 6.04085 6.07183 6.23715 6.46397 6.50528 6.80727 6.82723 6.94919 7.34280 8.83106 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.020427 B = 0.002087 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.401320 B =13410.904836 C =13863.508347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.081 3.919 3 H 0.067 0.933 4 O -0.390 6.390 5 C 0.044 3.956 6 C -0.179 4.179 7 C 0.110 3.890 8 O -0.565 6.565 9 C 0.043 3.957 10 N -0.690 5.690 11 C 0.123 3.877 12 C -0.158 4.158 13 C -0.054 4.054 14 C -0.218 4.218 15 C 0.213 3.787 16 N -0.632 5.632 17 C 0.098 3.902 18 C 0.267 3.733 19 C -0.541 4.541 20 H 0.049 0.951 21 C 0.012 3.988 22 N -0.926 5.926 23 Si 0.961 3.039 24 H -0.268 1.268 25 H -0.279 1.279 26 H -0.273 1.273 27 C -0.217 4.217 28 C -0.060 4.060 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.110 0.890 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.394 0.606 37 H 0.055 0.945 38 H 0.081 0.919 39 H 0.344 0.656 40 H 0.049 0.951 41 H 0.074 0.926 42 H 0.120 0.880 43 H 0.092 0.908 44 H 0.052 0.948 45 H 0.055 0.945 46 H 0.079 0.921 47 H 0.008 0.992 48 H 0.010 0.990 49 H 0.267 0.733 50 H 0.132 0.868 51 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.662 2.300 -25.565 25.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.022 3.978 3 H 0.085 0.915 4 O -0.309 6.309 5 C -0.032 4.032 6 C -0.217 4.217 7 C 0.068 3.932 8 O -0.374 6.374 9 C -0.086 4.086 10 N -0.322 5.322 11 C -0.005 4.005 12 C -0.161 4.161 13 C -0.074 4.074 14 C -0.241 4.241 15 C 0.108 3.892 16 N -0.340 5.340 17 C -0.045 4.045 18 C 0.145 3.855 19 C -0.580 4.580 20 H 0.067 0.933 21 C -0.188 4.188 22 N -0.566 5.566 23 Si 0.786 3.214 24 H -0.193 1.193 25 H -0.204 1.204 26 H -0.198 1.198 27 C -0.240 4.240 28 C -0.079 4.079 29 H 0.101 0.899 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.128 0.872 34 H 0.115 0.885 35 H 0.110 0.890 36 H 0.245 0.755 37 H 0.073 0.927 38 H 0.099 0.901 39 H 0.163 0.837 40 H 0.067 0.933 41 H 0.092 0.908 42 H 0.138 0.862 43 H 0.110 0.890 44 H 0.071 0.929 45 H 0.074 0.926 46 H 0.098 0.902 47 H 0.026 0.974 48 H 0.028 0.972 49 H 0.076 0.924 50 H 0.150 0.850 51 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -2.676 3.238 -25.484 25.828 hybrid contribution -0.304 -0.911 1.462 1.749 sum -2.980 2.327 -24.022 24.318 Atomic orbital electron populations 1.22029 0.91826 1.03568 1.03351 1.22657 0.96128 0.95733 0.83255 0.91490 1.88891 1.40638 1.68069 1.33339 1.23651 0.87083 0.96825 0.95669 1.23810 1.01621 0.98922 0.97337 1.22490 0.90580 0.89482 0.90638 1.86411 1.68835 1.40580 1.41577 1.22705 0.96067 0.98105 0.91723 1.60423 1.19368 1.29569 1.22874 1.20573 0.91770 0.96449 0.91736 1.19474 1.07237 0.94241 0.95142 1.20783 0.95584 0.98899 0.92089 1.20783 1.09178 0.93976 1.00124 1.18244 0.91544 0.91190 0.88245 1.46971 1.66869 1.08997 1.11191 1.21599 1.00390 0.80644 1.01853 1.18758 0.94721 0.92163 0.79848 1.21740 0.99801 1.36726 0.99742 0.93253 1.25792 0.99183 0.94576 0.99217 1.70025 1.29306 1.37939 1.19344 0.85559 0.79403 0.78656 0.77780 1.19338 1.20440 1.19824 1.20784 1.09965 1.00720 0.92519 1.20918 0.95766 0.93192 0.97997 0.89945 0.91405 0.90947 0.92046 0.87187 0.88546 0.89041 0.75493 0.92673 0.90057 0.83655 0.93275 0.90798 0.86215 0.88983 0.92947 0.92639 0.90243 0.97370 0.97187 0.92385 0.84989 0.83889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 8.41 71.98 0.61 -1.39 16 2 C 0.08 1.38 3.88 30.97 0.12 1.50 16 3 H 0.07 1.31 7.97 -2.39 -0.02 1.29 16 4 O -0.39 -7.36 11.19 -148.98 -1.67 -9.02 16 5 C 0.04 0.62 7.72 72.66 0.56 1.18 16 6 C -0.18 -2.29 5.49 31.89 0.18 -2.12 16 7 C 0.11 1.71 1.17 -9.80 -0.01 1.70 16 8 O -0.57 -10.87 12.98 -148.98 -1.93 -12.80 16 9 C 0.04 0.62 3.62 86.30 0.31 0.93 16 10 N -0.69 -11.41 6.00 -517.93 -3.11 -14.52 16 11 C 0.12 2.34 5.81 85.56 0.50 2.84 16 12 C -0.16 -4.12 5.39 -19.84 -0.11 -4.23 16 13 C -0.05 -1.78 9.69 22.25 0.22 -1.57 16 14 C -0.22 -8.95 9.21 22.40 0.21 -8.75 16 15 C 0.21 8.44 6.55 38.21 0.25 8.69 16 16 N -0.63 -27.34 2.99 -726.55 -2.17 -29.51 16 17 C 0.10 3.34 10.19 127.77 1.30 4.64 16 18 C 0.27 14.00 4.91 85.63 0.42 14.42 16 19 C -0.54 -30.36 9.39 25.60 0.24 -30.12 16 20 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 21 C 0.01 0.65 5.46 84.66 0.46 1.11 16 22 N -0.93 -54.48 13.28 21.45 0.28 -54.19 16 23 Si 0.96 43.99 29.54 68.60 2.03 46.01 16 24 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 25 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 26 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 27 C -0.22 -6.73 9.21 22.40 0.21 -6.52 16 28 C -0.06 -1.51 9.69 22.25 0.22 -1.29 16 29 H 0.08 0.96 6.93 -2.38 -0.02 0.95 16 30 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.07 0.87 6.61 -2.39 -0.02 0.86 16 32 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.10 1.14 8.08 -2.39 -0.02 1.12 16 35 H 0.09 1.01 7.69 -2.39 -0.02 0.99 16 36 H 0.39 6.54 8.62 -74.05 -0.64 5.90 16 37 H 0.06 0.70 6.60 -2.39 -0.02 0.68 16 38 H 0.08 1.27 6.95 -2.39 -0.02 1.25 16 39 H 0.34 5.25 7.59 -89.69 -0.68 4.56 16 40 H 0.05 0.79 8.08 -2.39 -0.02 0.77 16 41 H 0.07 1.45 8.09 -2.38 -0.02 1.43 16 42 H 0.12 3.63 8.06 -2.91 -0.02 3.61 16 43 H 0.09 4.44 6.14 -2.91 -0.02 4.42 16 44 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.05 1.98 8.07 -2.39 -0.02 1.96 16 46 H 0.08 2.26 6.20 -2.38 -0.01 2.24 16 47 H 0.01 0.46 8.07 -2.39 -0.02 0.44 16 48 H 0.01 0.58 6.20 -2.38 -0.01 0.56 16 49 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 50 H 0.13 3.52 6.14 -2.91 -0.02 3.50 16 51 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -65.82 401.92 -1.28 -67.10 By element: Atomic # 1 Polarization: 26.28 SS G_CDS: -0.38 Total: 25.90 kcal Atomic # 6 Polarization: -24.64 SS G_CDS: 5.67 Total: -18.97 kcal Atomic # 7 Polarization: -93.23 SS G_CDS: -4.99 Total: -98.22 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -3.60 Total: -21.83 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Total: -65.82 -1.28 -67.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278703992.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.343 kcal (2) G-P(sol) polarization free energy of solvation -65.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds