Wall clock time and date at job start Tue Mar 31 2020 19:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46739 * 2 1 4 4 O 1.42898 * 109.46721 * 240.00388 * 2 1 3 5 5 C 1.52998 * 109.47033 * 119.99956 * 2 1 3 6 6 N 1.46896 * 109.47136 * 180.23371 * 5 2 1 7 7 C 1.46949 * 111.00364 * 199.17222 * 6 5 2 8 8 C 1.53052 * 109.36643 * 176.81005 * 7 6 5 9 9 N 1.46961 * 109.36024 * 58.40814 * 8 7 6 10 10 C 1.46905 * 110.99884 * 176.81350 * 9 8 7 11 11 C 1.50695 * 109.46697 * 293.79624 * 10 9 8 12 12 C 1.38305 * 119.93530 * 90.00072 * 11 10 9 13 13 C 1.38098 * 120.07084 * 180.02562 * 12 11 10 14 14 C 1.38871 * 119.93038 * 0.02562 * 13 12 11 15 15 O 1.35752 * 120.06622 * 179.97438 * 14 13 12 16 16 C 1.34829 * 117.00596 * 5.61899 * 15 14 13 17 17 H 1.08007 * 119.99471 * 354.93954 * 16 15 14 18 18 C 1.38647 * 120.00523 * 174.93084 * 16 15 14 19 19 N 1.31558 * 120.00218 * 180.02562 * 18 16 15 20 20 Si 1.86794 * 120.00018 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47299 * 89.99854 * 20 18 16 22 22 H 1.48494 * 109.47413 * 329.99717 * 20 18 16 23 23 H 1.48499 * 109.47390 * 209.99491 * 20 18 16 24 24 C 1.38879 * 119.86787 * 0.24780 * 14 13 12 25 25 C 1.38101 * 119.92467 * 359.49036 * 24 14 13 26 26 C 1.46958 * 110.87733 * 300.67603 * 9 8 7 27 27 H 1.09006 * 109.49106 * 299.35462 * 26 9 8 28 28 C 1.53000 * 109.48751 * 179.29010 * 26 9 8 29 29 C 1.46963 * 110.99840 * 75.37155 * 6 5 2 30 30 H 1.09005 * 109.47211 * 299.99897 * 1 2 3 31 31 H 1.09000 * 109.47289 * 59.99706 * 1 2 3 32 32 H 1.09006 * 109.47216 * 180.02562 * 1 2 3 33 33 H 0.96696 * 114.00109 * 299.99125 * 4 2 1 34 34 H 1.09005 * 109.46755 * 60.23662 * 5 2 1 35 35 H 1.08990 * 109.47546 * 300.23804 * 5 2 1 36 36 H 1.08993 * 109.49333 * 296.78261 * 7 6 5 37 37 H 1.09005 * 109.48759 * 56.84834 * 7 6 5 38 38 H 1.08998 * 109.49340 * 298.43879 * 8 7 6 39 39 H 1.08997 * 109.48815 * 178.37099 * 8 7 6 40 40 H 1.08996 * 109.46941 * 173.79917 * 10 9 8 41 41 H 1.09001 * 109.47389 * 53.79609 * 10 9 8 42 42 H 1.08003 * 119.95832 * 0.04526 * 12 11 10 43 43 H 1.08007 * 120.03107 * 179.97438 * 13 12 11 44 44 H 0.96996 * 120.00535 * 179.97438 * 19 18 16 45 45 H 1.07997 * 120.03986 * 179.73350 * 24 14 13 46 46 H 1.07996 * 119.96741 * 180.27184 * 25 24 14 47 47 H 1.09004 * 109.47130 * 59.99918 * 28 26 9 48 48 H 1.09001 * 109.47143 * 179.97438 * 28 26 9 49 49 H 1.08999 * 109.47096 * 300.00364 * 28 26 9 50 50 H 1.09008 * 109.48239 * 63.22763 * 29 6 5 51 51 H 1.08998 * 109.49052 * 303.16297 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0400 -0.7212 1.2492 6 7 3.5089 -0.7164 1.2521 7 6 4.0374 -1.7539 2.1486 8 6 5.5654 -1.7687 2.0627 9 7 6.0869 -0.4446 2.4293 10 6 7.5559 -0.4396 2.4321 11 6 8.0591 -1.3369 3.5333 12 6 8.2941 -2.6760 3.2792 13 6 8.7547 -3.5009 4.2864 14 6 8.9814 -2.9848 5.5555 15 8 9.4337 -3.7933 6.5478 16 6 9.7536 -5.0585 6.2086 17 1 9.5686 -5.4116 5.2048 18 6 10.3202 -5.9060 7.1483 19 7 10.6329 -7.1402 6.8172 20 14 10.6397 -5.2954 8.8845 21 1 9.4477 -5.5602 9.7296 22 1 10.9104 -3.8356 8.8539 23 1 11.8151 -6.0050 9.4504 24 6 8.7391 -1.6410 5.8091 25 6 8.2837 -0.8200 4.7963 26 6 5.5584 0.5930 1.5328 27 1 5.8631 0.3782 0.5084 28 6 6.1065 1.9582 1.9531 29 6 4.0305 0.6078 1.6186 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.7210 -1.5951 -1.2329 34 1 1.6801 -1.7501 1.2471 35 1 1.6732 -0.2100 2.1392 36 1 3.7328 -1.5391 3.1728 37 1 3.6469 -2.7265 1.8492 38 1 5.8701 -2.0104 1.0444 39 1 5.9609 -2.5179 2.7485 40 1 7.9154 0.5759 2.5981 41 1 7.9223 -0.8024 1.4718 42 1 8.1175 -3.0767 2.2920 43 1 8.9376 -4.5466 4.0874 44 1 11.0296 -7.7331 7.4744 45 1 8.9103 -1.2376 6.7962 46 1 8.0992 0.2260 4.9916 47 1 7.1949 1.9468 1.8937 48 1 5.7148 2.7276 1.2877 49 1 5.8008 2.1729 2.9771 50 1 3.7258 0.8495 2.6370 51 1 3.6349 1.3570 0.9328 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283451588.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:46 Heat of formation + Delta-G solvation = -38.394985 kcal Electronic energy + Delta-G solvation = -29082.265836 eV Core-core repulsion = 25175.406176 eV Total energy + Delta-G solvation = -3906.859660 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -39.97156 -39.09412 -37.95978 -36.74483 -35.15440 -32.68015 -32.33958 -31.69989 -30.23203 -30.16337 -27.88180 -27.12445 -25.67381 -24.83346 -23.29069 -22.24424 -21.78261 -21.50731 -20.31061 -19.65853 -17.86894 -17.24978 -16.87582 -16.32191 -16.04774 -15.62384 -15.12582 -15.06969 -14.83377 -14.64907 -14.32898 -14.07804 -13.94852 -13.69305 -13.54132 -13.24480 -13.05547 -12.74114 -12.64835 -12.60189 -12.35628 -12.23962 -12.16089 -11.99150 -11.78516 -11.57328 -11.36090 -11.29009 -11.09769 -10.98298 -10.81298 -10.71489 -10.58850 -10.40676 -10.19461 -10.11454 -9.37744 -8.86624 -8.49940 -8.27009 -8.17373 -7.29387 -6.41505 -4.08114 2.14239 2.19951 3.22489 3.25197 3.40132 3.54553 3.92405 4.21573 4.23669 4.38109 4.55318 4.68156 4.79060 4.80296 4.86945 4.93814 4.96203 5.05943 5.12216 5.19478 5.25744 5.27740 5.31568 5.34632 5.40470 5.47871 5.50872 5.55730 5.64588 5.68246 5.69001 5.75124 5.80834 5.81335 5.90589 5.99711 6.03797 6.13043 6.16521 6.35877 6.59163 6.78594 6.81041 6.82879 7.02779 7.13913 7.23065 7.27871 7.35223 7.45298 7.62796 7.80526 8.04390 8.93887 9.56846 10.66176 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.019508 B = 0.002259 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.981372 B =12391.737018 C =13095.042347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.109 3.891 3 H 0.094 0.906 4 O -0.550 6.550 5 C 0.022 3.978 6 N -0.531 5.531 7 C 0.059 3.941 8 C 0.057 3.943 9 N -0.529 5.529 10 C 0.107 3.893 11 C -0.168 4.168 12 C -0.068 4.068 13 C -0.221 4.221 14 C 0.161 3.839 15 O -0.219 6.219 16 C -0.388 4.388 17 H 0.106 0.894 18 C 0.062 3.938 19 N -0.880 5.880 20 Si 0.906 3.094 21 H -0.274 1.274 22 H -0.260 1.260 23 H -0.283 1.283 24 C -0.194 4.194 25 C -0.055 4.055 26 C 0.083 3.917 27 H 0.047 0.953 28 C -0.148 4.148 29 C 0.065 3.935 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.371 0.629 34 H 0.075 0.925 35 H 0.043 0.957 36 H 0.041 0.959 37 H 0.076 0.924 38 H 0.038 0.962 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.033 0.967 42 H 0.105 0.895 43 H 0.132 0.868 44 H 0.279 0.721 45 H 0.115 0.885 46 H 0.112 0.888 47 H 0.062 0.938 48 H 0.057 0.943 49 H 0.063 0.937 50 H 0.040 0.960 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.725 15.782 -12.378 26.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.049 3.951 3 H 0.112 0.888 4 O -0.354 6.354 5 C -0.107 4.107 6 N -0.255 5.255 7 C -0.069 4.069 8 C -0.071 4.071 9 N -0.254 5.254 10 C -0.019 4.019 11 C -0.169 4.169 12 C -0.087 4.087 13 C -0.240 4.240 14 C 0.108 3.892 15 O -0.124 6.124 16 C -0.464 4.464 17 H 0.123 0.877 18 C -0.141 4.141 19 N -0.518 5.518 20 Si 0.731 3.269 21 H -0.199 1.199 22 H -0.184 1.184 23 H -0.208 1.208 24 C -0.213 4.213 25 C -0.074 4.074 26 C -0.026 4.026 27 H 0.065 0.935 28 C -0.206 4.206 29 C -0.063 4.063 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.218 0.782 34 H 0.094 0.906 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.094 0.906 38 H 0.056 0.944 39 H 0.109 0.891 40 H 0.098 0.902 41 H 0.051 0.949 42 H 0.123 0.877 43 H 0.149 0.851 44 H 0.089 0.911 45 H 0.133 0.867 46 H 0.130 0.870 47 H 0.081 0.919 48 H 0.076 0.924 49 H 0.082 0.918 50 H 0.059 0.941 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -16.315 16.180 -12.174 26.003 hybrid contribution -0.174 -0.663 0.894 1.127 sum -16.488 15.516 -11.280 25.295 Atomic orbital electron populations 1.22503 0.96501 1.02619 1.02774 1.21850 0.91886 0.96729 0.84634 0.88787 1.86610 1.77305 1.28611 1.42923 1.22862 0.88617 1.01337 0.97847 1.62076 1.06416 1.04963 1.52029 1.22192 0.95210 0.94825 0.94712 1.22189 0.93497 0.91737 0.99706 1.62241 1.07944 1.04172 1.51070 1.20898 0.86213 0.99205 0.95630 1.19149 1.08490 0.94171 0.95089 1.20661 0.97420 0.92831 0.97770 1.21233 1.08162 1.01228 0.93373 1.19135 0.92332 0.89997 0.87687 1.83572 1.72851 1.23169 1.32782 1.20760 1.41324 0.83603 1.00719 0.87663 1.24467 0.95380 0.94488 0.99723 1.69645 1.40988 1.05246 1.35953 0.86177 0.78077 0.80012 0.82618 1.19915 1.18363 1.20840 1.20207 1.09745 0.91401 0.99963 1.20438 0.96919 0.98239 0.91800 1.21610 0.93732 0.92340 0.94926 0.93502 1.21899 1.01334 0.95296 1.02041 1.22204 0.94420 0.90601 0.99088 0.91691 0.91611 0.92243 0.78246 0.90638 0.93856 0.94046 0.90563 0.94364 0.89146 0.90198 0.94900 0.87655 0.85072 0.91078 0.86665 0.87014 0.91919 0.92350 0.91770 0.94144 0.90741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.02 9.53 37.16 0.35 -0.66 16 2 C 0.11 0.80 3.64 -26.73 -0.10 0.71 16 3 H 0.09 0.75 6.86 -51.93 -0.36 0.39 16 4 O -0.55 -4.98 13.21 -35.23 -0.47 -5.45 16 5 C 0.02 0.18 4.66 -3.83 -0.02 0.16 16 6 N -0.53 -5.44 4.51 -234.48 -1.06 -6.50 16 7 C 0.06 0.66 5.57 -3.77 -0.02 0.64 16 8 C 0.06 0.73 5.25 -3.76 -0.02 0.71 16 9 N -0.53 -6.72 4.52 -227.92 -1.03 -7.75 16 10 C 0.11 1.42 4.88 -4.98 -0.02 1.40 16 11 C -0.17 -2.73 4.90 -104.57 -0.51 -3.24 16 12 C -0.07 -1.21 7.91 -39.61 -0.31 -1.52 16 13 C -0.22 -4.71 9.17 -39.40 -0.36 -5.07 16 14 C 0.16 3.70 6.65 -39.11 -0.26 3.44 16 15 O -0.22 -5.78 8.59 0.05 0.00 -5.78 16 16 C -0.39 -10.94 9.95 30.88 0.31 -10.63 16 17 H 0.11 3.02 5.44 -52.48 -0.29 2.74 16 18 C 0.06 1.76 5.49 -17.52 -0.10 1.66 16 19 N -0.88 -25.44 13.96 55.48 0.77 -24.66 16 20 Si 0.91 21.73 28.62 -169.99 -4.86 16.87 16 21 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.26 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 24 C -0.19 -3.84 9.99 -39.39 -0.39 -4.23 16 25 C -0.06 -0.94 9.69 -39.61 -0.38 -1.32 16 26 C 0.08 0.90 2.56 -67.66 -0.17 0.72 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 C -0.15 -1.35 8.89 37.16 0.33 -1.02 16 29 C 0.07 0.65 4.72 -3.77 -0.02 0.64 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.37 2.20 9.04 45.56 0.41 2.62 16 34 H 0.08 0.55 7.85 -51.93 -0.41 0.14 16 35 H 0.04 0.34 8.00 -51.93 -0.42 -0.08 16 36 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.78 8.00 -51.93 -0.42 0.36 16 38 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.09 1.31 5.95 -51.93 -0.31 1.00 16 40 H 0.08 0.97 5.67 -51.93 -0.29 0.67 16 41 H 0.03 0.44 8.06 -51.93 -0.42 0.02 16 42 H 0.11 1.66 7.99 -52.48 -0.42 1.24 16 43 H 0.13 2.96 5.64 -52.48 -0.30 2.66 16 44 H 0.28 7.45 8.31 -40.82 -0.34 7.11 16 45 H 0.12 2.15 8.06 -52.49 -0.42 1.72 16 46 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 47 H 0.06 0.57 6.15 -51.93 -0.32 0.25 16 48 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 50 H 0.04 0.43 8.14 -51.92 -0.42 0.01 16 51 H 0.07 0.67 6.77 -51.93 -0.35 0.32 16 LS Contribution 397.29 15.07 5.99 5.99 Total: -1.00 -30.34 397.29 -10.02 -40.36 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -7.66 Total: 4.56 kcal Atomic # 6 Polarization: -15.93 SS G_CDS: -1.70 Total: -17.63 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: -1.31 Total: -38.91 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: -0.46 Total: -11.22 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.86 Total: 16.87 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -30.34 -10.02 -40.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283451588.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.965 kcal (2) G-P(sol) polarization free energy of solvation -30.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds