Wall clock time and date at job start Tue Mar 31 2020 19:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46739 * 2 1 4 4 O 1.42898 * 109.46721 * 240.00388 * 2 1 3 5 5 C 1.52998 * 109.47033 * 119.99956 * 2 1 3 6 6 N 1.46896 * 109.47136 * 180.23371 * 5 2 1 7 7 C 1.46949 * 111.00364 * 199.17222 * 6 5 2 8 8 C 1.53052 * 109.36643 * 176.81005 * 7 6 5 9 9 N 1.46961 * 109.36024 * 58.40814 * 8 7 6 10 10 C 1.46905 * 110.99884 * 176.81350 * 9 8 7 11 11 C 1.50695 * 109.46697 * 293.79624 * 10 9 8 12 12 C 1.38305 * 119.93530 * 90.00072 * 11 10 9 13 13 C 1.38098 * 120.07084 * 180.02562 * 12 11 10 14 14 C 1.38871 * 119.93038 * 0.02562 * 13 12 11 15 15 O 1.35752 * 120.06622 * 179.97438 * 14 13 12 16 16 C 1.34829 * 117.00596 * 5.61899 * 15 14 13 17 17 H 1.08007 * 119.99471 * 354.93954 * 16 15 14 18 18 C 1.38647 * 120.00523 * 174.93084 * 16 15 14 19 19 N 1.31558 * 120.00218 * 180.02562 * 18 16 15 20 20 Si 1.86794 * 120.00018 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47299 * 89.99854 * 20 18 16 22 22 H 1.48494 * 109.47413 * 329.99717 * 20 18 16 23 23 H 1.48499 * 109.47390 * 209.99491 * 20 18 16 24 24 C 1.38879 * 119.86787 * 0.24780 * 14 13 12 25 25 C 1.38101 * 119.92467 * 359.49036 * 24 14 13 26 26 C 1.46958 * 110.87733 * 300.67603 * 9 8 7 27 27 H 1.09006 * 109.49106 * 299.35462 * 26 9 8 28 28 C 1.53000 * 109.48751 * 179.29010 * 26 9 8 29 29 C 1.46963 * 110.99840 * 75.37155 * 6 5 2 30 30 H 1.09005 * 109.47211 * 299.99897 * 1 2 3 31 31 H 1.09000 * 109.47289 * 59.99706 * 1 2 3 32 32 H 1.09006 * 109.47216 * 180.02562 * 1 2 3 33 33 H 0.96696 * 114.00109 * 299.99125 * 4 2 1 34 34 H 1.09005 * 109.46755 * 60.23662 * 5 2 1 35 35 H 1.08990 * 109.47546 * 300.23804 * 5 2 1 36 36 H 1.08993 * 109.49333 * 296.78261 * 7 6 5 37 37 H 1.09005 * 109.48759 * 56.84834 * 7 6 5 38 38 H 1.08998 * 109.49340 * 298.43879 * 8 7 6 39 39 H 1.08997 * 109.48815 * 178.37099 * 8 7 6 40 40 H 1.08996 * 109.46941 * 173.79917 * 10 9 8 41 41 H 1.09001 * 109.47389 * 53.79609 * 10 9 8 42 42 H 1.08003 * 119.95832 * 0.04526 * 12 11 10 43 43 H 1.08007 * 120.03107 * 179.97438 * 13 12 11 44 44 H 0.96996 * 120.00535 * 179.97438 * 19 18 16 45 45 H 1.07997 * 120.03986 * 179.73350 * 24 14 13 46 46 H 1.07996 * 119.96741 * 180.27184 * 25 24 14 47 47 H 1.09004 * 109.47130 * 59.99918 * 28 26 9 48 48 H 1.09001 * 109.47143 * 179.97438 * 28 26 9 49 49 H 1.08999 * 109.47096 * 300.00364 * 28 26 9 50 50 H 1.09008 * 109.48239 * 63.22763 * 29 6 5 51 51 H 1.08998 * 109.49052 * 303.16297 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0400 -0.7212 1.2492 6 7 3.5089 -0.7164 1.2521 7 6 4.0374 -1.7539 2.1486 8 6 5.5654 -1.7687 2.0627 9 7 6.0869 -0.4446 2.4293 10 6 7.5559 -0.4396 2.4321 11 6 8.0591 -1.3369 3.5333 12 6 8.2941 -2.6760 3.2792 13 6 8.7547 -3.5009 4.2864 14 6 8.9814 -2.9848 5.5555 15 8 9.4337 -3.7933 6.5478 16 6 9.7536 -5.0585 6.2086 17 1 9.5686 -5.4116 5.2048 18 6 10.3202 -5.9060 7.1483 19 7 10.6329 -7.1402 6.8172 20 14 10.6397 -5.2954 8.8845 21 1 9.4477 -5.5602 9.7296 22 1 10.9104 -3.8356 8.8539 23 1 11.8151 -6.0050 9.4504 24 6 8.7391 -1.6410 5.8091 25 6 8.2837 -0.8200 4.7963 26 6 5.5584 0.5930 1.5328 27 1 5.8631 0.3782 0.5084 28 6 6.1065 1.9582 1.9531 29 6 4.0305 0.6078 1.6186 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.7210 -1.5951 -1.2329 34 1 1.6801 -1.7501 1.2471 35 1 1.6732 -0.2100 2.1392 36 1 3.7328 -1.5391 3.1728 37 1 3.6469 -2.7265 1.8492 38 1 5.8701 -2.0104 1.0444 39 1 5.9609 -2.5179 2.7485 40 1 7.9154 0.5759 2.5981 41 1 7.9223 -0.8024 1.4718 42 1 8.1175 -3.0767 2.2920 43 1 8.9376 -4.5466 4.0874 44 1 11.0296 -7.7331 7.4744 45 1 8.9103 -1.2376 6.7962 46 1 8.0992 0.2260 4.9916 47 1 7.1949 1.9468 1.8937 48 1 5.7148 2.7276 1.2877 49 1 5.8008 2.1729 2.9771 50 1 3.7258 0.8495 2.6370 51 1 3.6349 1.3570 0.9328 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283451588.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:44 Heat of formation + Delta-G solvation = -60.319157 kcal Electronic energy + Delta-G solvation = -29083.216539 eV Core-core repulsion = 25175.406176 eV Total energy + Delta-G solvation = -3907.810364 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.12435 -40.50515 -38.91617 -38.09053 -36.09966 -34.47460 -33.51342 -32.48773 -31.79696 -31.30233 -28.95499 -27.89549 -27.35542 -25.95189 -24.40757 -23.69239 -22.77856 -22.22409 -21.74039 -20.59686 -19.78752 -19.07491 -17.58540 -17.10449 -16.86128 -16.71452 -16.49577 -16.33211 -15.86185 -15.72519 -15.63527 -15.46546 -15.30478 -15.09702 -14.66149 -14.45742 -14.24270 -14.10831 -14.02166 -13.67469 -13.30857 -13.29640 -13.02639 -12.85082 -12.74127 -12.64550 -12.56319 -12.49000 -12.36912 -12.28111 -11.98082 -11.97030 -11.80747 -11.49068 -11.41867 -11.24951 -10.89787 -10.83842 -9.77914 -9.34540 -9.21607 -8.94446 -8.49962 -6.22421 0.57867 0.63388 1.31074 1.35487 1.51413 2.27835 2.68074 2.81278 2.94345 3.12104 3.27548 3.66974 3.76674 3.85009 3.90911 4.03283 4.10892 4.18125 4.19952 4.25377 4.31382 4.35681 4.40513 4.46259 4.47010 4.56975 4.59018 4.68539 4.70504 4.77362 4.81638 4.82813 4.88056 4.91417 4.96588 5.00039 5.07313 5.16387 5.19286 5.26532 5.27956 5.36549 5.40759 5.59166 5.76404 5.80756 5.91189 5.99541 6.00896 6.20193 6.22268 6.29241 6.84415 6.96484 7.59386 8.61655 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.019508 B = 0.002259 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.981372 B =12391.737018 C =13095.042347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.112 3.888 3 H 0.088 0.912 4 O -0.571 6.571 5 C 0.024 3.976 6 N -0.538 5.538 7 C 0.064 3.936 8 C 0.058 3.942 9 N -0.534 5.534 10 C 0.109 3.891 11 C -0.142 4.142 12 C -0.066 4.066 13 C -0.235 4.235 14 C 0.120 3.880 15 O -0.246 6.246 16 C -0.398 4.398 17 H 0.080 0.920 18 C 0.008 3.992 19 N -0.924 5.924 20 Si 0.971 3.029 21 H -0.266 1.266 22 H -0.263 1.263 23 H -0.268 1.268 24 C -0.192 4.192 25 C -0.048 4.048 26 C 0.084 3.916 27 H 0.038 0.962 28 C -0.143 4.143 29 C 0.067 3.933 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.383 0.617 34 H 0.082 0.918 35 H 0.047 0.953 36 H 0.031 0.969 37 H 0.083 0.917 38 H 0.034 0.966 39 H 0.069 0.931 40 H 0.103 0.897 41 H 0.038 0.962 42 H 0.125 0.875 43 H 0.106 0.894 44 H 0.284 0.716 45 H 0.127 0.873 46 H 0.151 0.849 47 H 0.065 0.935 48 H 0.075 0.925 49 H 0.062 0.938 50 H 0.036 0.964 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.258 19.096 -12.937 29.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.053 3.947 3 H 0.106 0.894 4 O -0.378 6.378 5 C -0.105 4.105 6 N -0.263 5.263 7 C -0.064 4.064 8 C -0.070 4.070 9 N -0.259 5.259 10 C -0.017 4.017 11 C -0.143 4.143 12 C -0.085 4.085 13 C -0.255 4.255 14 C 0.071 3.929 15 O -0.154 6.154 16 C -0.474 4.474 17 H 0.097 0.903 18 C -0.190 4.190 19 N -0.565 5.565 20 Si 0.794 3.206 21 H -0.191 1.191 22 H -0.187 1.187 23 H -0.192 1.192 24 C -0.211 4.211 25 C -0.066 4.066 26 C -0.025 4.025 27 H 0.056 0.944 28 C -0.201 4.201 29 C -0.061 4.061 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.231 0.769 34 H 0.101 0.899 35 H 0.066 0.934 36 H 0.049 0.951 37 H 0.102 0.898 38 H 0.052 0.948 39 H 0.088 0.912 40 H 0.121 0.879 41 H 0.056 0.944 42 H 0.143 0.857 43 H 0.124 0.876 44 H 0.094 0.906 45 H 0.145 0.855 46 H 0.169 0.831 47 H 0.084 0.916 48 H 0.094 0.906 49 H 0.081 0.919 50 H 0.054 0.946 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -17.878 19.523 -12.767 29.390 hybrid contribution 0.135 -1.471 0.775 1.668 sum -17.744 18.052 -11.993 28.010 Atomic orbital electron populations 1.22429 0.94933 1.03267 1.03101 1.21844 0.93018 0.96099 0.83776 0.89393 1.86570 1.77857 1.29744 1.43625 1.22912 0.87168 1.02020 0.98354 1.62097 1.07865 1.04795 1.51509 1.22093 0.94156 0.95746 0.94426 1.22116 0.94652 0.91461 0.98765 1.62221 1.07281 1.04488 1.51957 1.20925 0.86881 0.99534 0.94396 1.19593 1.05086 0.93688 0.95919 1.20863 0.96527 0.93354 0.97714 1.21211 1.09384 1.00679 0.94190 1.19669 0.94041 0.91208 0.87980 1.83513 1.75357 1.22500 1.34001 1.20692 1.41748 0.84943 1.00007 0.90255 1.25290 0.95338 0.94624 1.03741 1.69729 1.42833 1.06417 1.37495 0.85204 0.78563 0.79136 0.77737 1.19095 1.18688 1.19247 1.20517 1.08968 0.90146 1.01471 1.20871 0.95115 0.99677 0.90961 1.21684 0.94272 0.92556 0.93957 0.94408 1.21877 1.01446 0.94457 1.02338 1.22208 0.93905 0.90812 0.99153 0.90890 0.91726 0.91470 0.76909 0.89950 0.93439 0.95100 0.89839 0.94769 0.91232 0.87921 0.94409 0.85715 0.87647 0.90604 0.85472 0.83142 0.91635 0.90633 0.91891 0.94594 0.89482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.56 9.53 71.98 0.69 -0.87 16 2 C 0.11 1.43 3.64 30.59 0.11 1.54 16 3 H 0.09 1.21 6.86 -2.39 -0.02 1.20 16 4 O -0.57 -9.33 13.21 -148.98 -1.97 -11.30 16 5 C 0.02 0.33 4.66 86.30 0.40 0.73 16 6 N -0.54 -9.96 4.51 -895.74 -4.04 -14.00 16 7 C 0.06 1.35 5.57 86.31 0.48 1.83 16 8 C 0.06 1.41 5.25 86.31 0.45 1.87 16 9 N -0.53 -12.14 4.52 -875.02 -3.95 -16.09 16 10 C 0.11 2.54 4.88 85.55 0.42 2.96 16 11 C -0.14 -4.27 4.90 -19.83 -0.10 -4.37 16 12 C -0.07 -2.31 7.91 22.25 0.18 -2.14 16 13 C -0.24 -10.47 9.17 22.39 0.21 -10.26 16 14 C 0.12 5.68 6.65 22.58 0.15 5.83 16 15 O -0.25 -13.54 8.59 -22.75 -0.20 -13.73 16 16 C -0.40 -23.71 9.95 67.92 0.68 -23.03 16 17 H 0.08 4.97 5.44 -2.91 -0.02 4.95 16 18 C 0.01 0.48 5.49 84.83 0.47 0.95 16 19 N -0.92 -55.69 13.96 21.61 0.30 -55.39 16 20 Si 0.97 45.90 28.62 68.60 1.96 47.86 16 21 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 22 H -0.26 -12.37 7.11 99.48 0.71 -11.66 16 23 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 24 C -0.19 -7.38 9.99 22.39 0.22 -7.16 16 25 C -0.05 -1.48 9.69 22.25 0.22 -1.26 16 26 C 0.08 1.57 2.56 44.92 0.12 1.69 16 27 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 28 C -0.14 -2.07 8.89 71.98 0.64 -1.43 16 29 C 0.07 1.18 4.72 86.31 0.41 1.59 16 30 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 31 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 33 H 0.38 3.92 9.04 -74.06 -0.67 3.25 16 34 H 0.08 1.03 7.85 -2.38 -0.02 1.01 16 35 H 0.05 0.63 8.00 -2.39 -0.02 0.62 16 36 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.08 1.61 8.00 -2.38 -0.02 1.59 16 38 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.07 1.96 5.95 -2.39 -0.01 1.95 16 40 H 0.10 2.00 5.67 -2.39 -0.01 1.99 16 41 H 0.04 0.88 8.06 -2.39 -0.02 0.86 16 42 H 0.12 3.84 7.99 -2.91 -0.02 3.82 16 43 H 0.11 5.19 5.64 -2.91 -0.02 5.17 16 44 H 0.28 15.71 8.31 -92.71 -0.77 14.94 16 45 H 0.13 4.54 8.06 -2.91 -0.02 4.51 16 46 H 0.15 3.57 8.06 -2.91 -0.02 3.55 16 47 H 0.06 0.91 6.15 -2.39 -0.01 0.90 16 48 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 49 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 50 H 0.04 0.67 8.14 -2.38 -0.02 0.65 16 51 H 0.09 1.32 6.77 -2.39 -0.02 1.31 16 Total: -1.00 -68.58 397.29 -1.91 -70.49 By element: Atomic # 1 Polarization: 23.48 SS G_CDS: 0.25 Total: 23.73 kcal Atomic # 6 Polarization: -37.29 SS G_CDS: 5.73 Total: -31.56 kcal Atomic # 7 Polarization: -77.79 SS G_CDS: -7.69 Total: -85.49 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: -2.16 Total: -25.04 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 1.96 Total: 47.86 kcal Total: -68.58 -1.91 -70.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283451588.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.170 kcal (2) G-P(sol) polarization free energy of solvation -68.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds