Wall clock time and date at job start Tue Mar 31 2020 19:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47047 * 2 1 4 4 O 1.42893 * 109.47315 * 239.99768 * 2 1 3 5 5 C 1.53000 * 109.46757 * 119.99657 * 2 1 3 6 6 N 1.46905 * 109.47223 * 178.32484 * 5 2 1 7 7 C 1.46965 * 110.99597 * 52.38264 * 6 5 2 8 8 C 1.53048 * 109.36159 * 183.19326 * 7 6 5 9 9 N 1.46957 * 109.36506 * 301.59850 * 8 7 6 10 10 C 1.46895 * 111.00400 * 183.19042 * 9 8 7 11 11 C 1.50704 * 109.46742 * 46.20199 * 10 9 8 12 12 C 1.38298 * 119.92759 * 269.72153 * 11 10 9 13 13 C 1.38102 * 120.06972 * 179.72556 * 12 11 10 14 14 C 1.38883 * 119.92497 * 0.57612 * 13 12 11 15 15 O 1.35755 * 120.06498 * 179.68253 * 14 13 12 16 16 C 1.34829 * 116.99649 * 182.73724 * 15 14 13 17 17 H 1.08006 * 120.00144 * 354.75164 * 16 15 14 18 18 C 1.38651 * 119.99955 * 174.75342 * 16 15 14 19 19 N 1.31557 * 119.99945 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 120.00201 * 359.97438 * 18 16 15 21 21 H 1.48496 * 109.47032 * 90.00096 * 20 18 16 22 22 H 1.48497 * 109.47434 * 210.00084 * 20 18 16 23 23 H 1.48508 * 109.46800 * 330.00183 * 20 18 16 24 24 C 1.38877 * 119.86432 * 359.70258 * 14 13 12 25 25 C 1.38095 * 119.92985 * 0.02562 * 24 14 13 26 26 C 1.46957 * 110.87762 * 59.32049 * 9 8 7 27 27 H 1.08996 * 109.48854 * 60.65158 * 26 9 8 28 28 C 1.53003 * 109.48850 * 180.71214 * 26 9 8 29 29 C 1.46951 * 111.00197 * 176.18384 * 6 5 2 30 30 H 1.08999 * 109.47391 * 300.00315 * 1 2 3 31 31 H 1.08998 * 109.47349 * 60.00151 * 1 2 3 32 32 H 1.08998 * 109.47047 * 180.02562 * 1 2 3 33 33 H 0.96709 * 114.00190 * 300.00158 * 4 2 1 34 34 H 1.09005 * 109.47394 * 58.33063 * 5 2 1 35 35 H 1.09004 * 109.47398 * 298.32524 * 5 2 1 36 36 H 1.09000 * 109.49085 * 303.15703 * 7 6 5 37 37 H 1.08994 * 109.48471 * 63.20056 * 7 6 5 38 38 H 1.08998 * 109.48622 * 181.63278 * 8 7 6 39 39 H 1.08996 * 109.49460 * 61.56728 * 8 7 6 40 40 H 1.09005 * 109.47337 * 286.20204 * 10 9 8 41 41 H 1.09001 * 109.47545 * 166.20055 * 10 9 8 42 42 H 1.08003 * 119.96899 * 359.97438 * 12 11 10 43 43 H 1.07997 * 120.03859 * 180.27800 * 13 12 11 44 44 H 0.97001 * 119.99706 * 180.02562 * 19 18 16 45 45 H 1.08001 * 120.03318 * 179.97438 * 24 14 13 46 46 H 1.08007 * 119.96828 * 180.02562 * 25 24 14 47 47 H 1.09004 * 109.47119 * 60.00224 * 28 26 9 48 48 H 1.09000 * 109.47673 * 180.02562 * 28 26 9 49 49 H 1.09003 * 109.47427 * 300.00820 * 28 26 9 50 50 H 1.08998 * 109.49024 * 56.84682 * 29 6 5 51 51 H 1.08998 * 109.50794 * 296.78693 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.0399 -0.7212 1.2493 6 7 3.5084 -0.7564 1.2293 7 6 4.0647 0.5887 1.0268 8 6 5.5896 0.4983 0.9325 9 7 6.1187 -0.1077 2.1623 10 6 7.5871 -0.1429 2.1424 11 6 8.1155 1.1948 1.6921 12 6 8.3384 1.4316 0.3479 13 6 8.8172 2.6583 -0.0684 14 6 9.0862 3.6504 0.8655 15 8 9.5630 4.8550 0.4599 16 6 9.8562 5.7527 1.4223 17 1 9.6298 5.5309 2.4548 18 6 10.4484 6.9605 1.0864 19 7 10.7350 7.8362 2.0254 20 14 10.8407 7.3439 -0.6993 21 1 9.6787 8.0233 -1.3264 22 1 12.0285 8.2325 -0.7654 23 1 11.1266 6.0804 -1.4255 24 6 8.8668 3.4074 2.2151 25 6 8.3825 2.1807 2.6246 26 6 5.5624 -1.4527 2.3648 27 1 5.8377 -2.0903 1.5248 28 6 6.1196 -2.0458 3.6605 29 6 4.0375 -1.3623 2.4592 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.7210 -1.5953 -1.2328 34 1 1.6523 -1.7399 1.2645 35 1 1.7013 -0.1903 2.1391 36 1 3.6678 1.0112 0.1037 37 1 3.7890 1.2264 1.8666 38 1 6.0063 1.4981 0.8113 39 1 5.8652 -0.1172 0.0762 40 1 7.9227 -0.9171 1.4523 41 1 7.9591 -0.3622 3.1432 42 1 8.1341 0.6579 -0.3774 43 1 8.9869 2.8442 -1.1187 44 1 11.1489 8.6814 1.7904 45 1 9.0754 4.1768 2.9438 46 1 8.2113 1.9912 3.6740 47 1 5.8432 -1.4083 4.5003 48 1 5.7072 -3.0436 3.8103 49 1 7.2058 -2.1082 3.5939 50 1 3.6207 -2.3622 2.5804 51 1 3.7619 -0.7471 3.3157 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283451591.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:49 Heat of formation + Delta-G solvation = -58.798183 kcal Electronic energy + Delta-G solvation = -29312.723673 eV Core-core repulsion = 25404.979264 eV Total energy + Delta-G solvation = -3907.744409 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.20945 -40.52821 -39.01968 -38.09343 -36.04001 -34.48417 -33.52749 -32.38293 -31.85718 -31.29108 -29.04821 -27.90711 -27.36643 -25.80902 -24.29656 -23.67340 -23.50355 -21.86304 -21.65037 -20.54345 -19.80367 -19.09189 -17.63201 -17.11120 -16.77591 -16.73864 -16.64821 -16.19728 -15.91124 -15.75202 -15.64453 -15.41232 -15.16564 -15.06864 -14.86137 -14.45501 -14.35855 -14.16993 -14.02777 -13.57355 -13.31817 -13.18076 -13.07291 -12.85698 -12.79313 -12.70040 -12.57682 -12.46167 -12.34824 -12.32625 -12.01098 -11.96603 -11.79083 -11.51520 -11.38101 -11.26794 -10.90822 -10.79265 -9.79859 -9.35492 -9.23339 -8.91727 -8.50694 -6.23204 0.55623 0.60854 1.30821 1.35186 1.51029 2.27362 2.67912 2.83774 2.94728 3.10808 3.24776 3.62551 3.73685 3.87182 3.90557 4.03348 4.08388 4.15112 4.17516 4.24393 4.31023 4.33142 4.41281 4.47802 4.49708 4.56500 4.59613 4.69172 4.74637 4.77583 4.79578 4.86964 4.87608 4.91439 4.97207 4.98736 5.11071 5.14723 5.18534 5.25084 5.25822 5.35307 5.41423 5.55896 5.74713 5.81284 5.89672 5.98595 6.01351 6.20321 6.21648 6.29819 6.83688 6.96286 7.58092 8.60955 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.013852 B = 0.002597 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.893367 B =10777.852827 C =12003.584852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.101 3.899 3 H 0.081 0.919 4 O -0.570 6.570 5 C 0.026 3.974 6 N -0.535 5.535 7 C 0.061 3.939 8 C 0.064 3.936 9 N -0.538 5.538 10 C 0.115 3.885 11 C -0.149 4.149 12 C -0.060 4.060 13 C -0.191 4.191 14 C 0.122 3.878 15 O -0.245 6.245 16 C -0.399 4.399 17 H 0.081 0.919 18 C 0.010 3.990 19 N -0.924 5.924 20 Si 0.971 3.029 21 H -0.266 1.266 22 H -0.267 1.267 23 H -0.263 1.263 24 C -0.237 4.237 25 C -0.053 4.053 26 C 0.083 3.917 27 H 0.044 0.956 28 C -0.141 4.141 29 C 0.065 3.935 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.386 0.614 34 H 0.095 0.905 35 H 0.042 0.958 36 H 0.079 0.921 37 H 0.026 0.974 38 H 0.068 0.932 39 H 0.036 0.964 40 H 0.048 0.952 41 H 0.091 0.909 42 H 0.143 0.857 43 H 0.127 0.873 44 H 0.285 0.715 45 H 0.107 0.893 46 H 0.131 0.869 47 H 0.057 0.943 48 H 0.077 0.923 49 H 0.061 0.939 50 H 0.095 0.905 51 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.473 -24.034 -0.984 30.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.042 3.958 3 H 0.099 0.901 4 O -0.377 6.377 5 C -0.101 4.101 6 N -0.260 5.260 7 C -0.067 4.067 8 C -0.064 4.064 9 N -0.264 5.264 10 C -0.012 4.012 11 C -0.150 4.150 12 C -0.078 4.078 13 C -0.210 4.210 14 C 0.073 3.927 15 O -0.152 6.152 16 C -0.475 4.475 17 H 0.098 0.902 18 C -0.188 4.188 19 N -0.564 5.564 20 Si 0.793 3.207 21 H -0.191 1.191 22 H -0.192 1.192 23 H -0.187 1.187 24 C -0.256 4.256 25 C -0.072 4.072 26 C -0.025 4.025 27 H 0.062 0.938 28 C -0.199 4.199 29 C -0.063 4.063 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.234 0.766 34 H 0.113 0.887 35 H 0.060 0.940 36 H 0.098 0.902 37 H 0.045 0.955 38 H 0.086 0.914 39 H 0.054 0.946 40 H 0.066 0.934 41 H 0.109 0.891 42 H 0.160 0.840 43 H 0.145 0.855 44 H 0.094 0.906 45 H 0.125 0.875 46 H 0.149 0.851 47 H 0.076 0.924 48 H 0.096 0.904 49 H 0.080 0.920 50 H 0.114 0.886 51 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -18.082 -23.189 -1.247 29.432 hybrid contribution 0.169 0.645 0.036 0.668 sum -17.913 -22.545 -1.211 28.820 Atomic orbital electron populations 1.22408 0.94634 1.03579 1.02936 1.21940 0.93611 0.95995 0.84266 0.90135 1.86588 1.77747 1.29954 1.43402 1.22898 0.87268 1.02220 0.97764 1.62176 1.06845 1.20493 1.36469 1.22125 0.94307 0.89885 1.00416 1.22073 0.94131 0.99516 0.90728 1.62323 1.06333 1.21278 1.36455 1.20875 0.86776 0.92026 1.01474 1.19605 1.05504 0.96986 0.92921 1.20882 0.96175 0.95103 0.95665 1.20445 1.08711 0.93162 0.98648 1.19653 0.93767 0.85511 0.93747 1.83517 1.74834 1.21086 1.35790 1.20707 1.41168 0.96601 0.89021 0.90171 1.25281 0.95395 0.94263 1.03896 1.69732 1.42690 1.09137 1.34875 0.85218 0.78568 0.78722 0.78215 1.19073 1.19198 1.18704 1.21261 1.09287 0.99746 0.95312 1.20845 0.95240 0.91198 0.99878 1.21732 0.94084 0.88347 0.98318 0.93837 1.21829 1.01315 1.00965 0.95825 1.22223 0.93907 1.00058 0.90085 0.91087 0.92053 0.90708 0.76561 0.88658 0.94020 0.90229 0.95543 0.91406 0.94570 0.93402 0.89106 0.83952 0.85518 0.90567 0.87522 0.85099 0.92360 0.90369 0.92022 0.88645 0.94922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.78 9.53 71.98 0.69 -1.10 16 2 C 0.10 1.48 3.00 30.59 0.09 1.57 16 3 H 0.08 1.46 6.35 -2.39 -0.02 1.45 16 4 O -0.57 -9.81 13.17 -148.98 -1.96 -11.77 16 5 C 0.03 0.36 4.80 86.30 0.41 0.78 16 6 N -0.54 -9.89 4.65 -895.70 -4.17 -14.06 16 7 C 0.06 1.40 5.13 86.31 0.44 1.84 16 8 C 0.06 1.61 4.65 86.31 0.40 2.01 16 9 N -0.54 -12.46 4.67 -875.03 -4.09 -16.54 16 10 C 0.12 2.70 4.61 85.56 0.39 3.09 16 11 C -0.15 -4.54 4.13 -19.83 -0.08 -4.63 16 12 C -0.06 -1.88 7.85 22.25 0.17 -1.70 16 13 C -0.19 -7.40 9.99 22.39 0.22 -7.17 16 14 C 0.12 5.81 6.65 22.58 0.15 5.96 16 15 O -0.24 -13.51 8.59 -22.79 -0.20 -13.71 16 16 C -0.40 -23.85 9.94 67.92 0.68 -23.17 16 17 H 0.08 5.03 5.43 -2.91 -0.02 5.02 16 18 C 0.01 0.58 5.49 84.83 0.47 1.05 16 19 N -0.92 -55.83 13.96 21.61 0.30 -55.53 16 20 Si 0.97 46.06 28.62 68.60 1.96 48.02 16 21 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 22 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 23 H -0.26 -12.45 7.11 99.48 0.71 -11.74 16 24 C -0.24 -10.61 9.17 22.39 0.21 -10.40 16 25 C -0.05 -1.88 9.69 22.25 0.22 -1.67 16 26 C 0.08 1.52 2.52 44.92 0.11 1.63 16 27 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 28 C -0.14 -2.03 8.87 71.98 0.64 -1.39 16 29 C 0.07 1.09 4.90 86.31 0.42 1.51 16 30 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.39 3.80 9.05 -74.05 -0.67 3.13 16 34 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 35 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.08 1.88 6.05 -2.39 -0.01 1.87 16 37 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.07 2.04 5.86 -2.39 -0.01 2.02 16 39 H 0.04 0.92 8.14 -2.39 -0.02 0.91 16 40 H 0.05 1.03 8.02 -2.38 -0.02 1.01 16 41 H 0.09 1.95 6.80 -2.39 -0.02 1.94 16 42 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 43 H 0.13 4.59 8.06 -2.91 -0.02 4.57 16 44 H 0.28 15.76 8.31 -92.71 -0.77 14.99 16 45 H 0.11 5.28 5.62 -2.91 -0.02 5.26 16 46 H 0.13 4.06 8.06 -2.91 -0.02 4.04 16 47 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 48 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 49 H 0.06 0.89 6.59 -2.39 -0.02 0.87 16 50 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 51 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 Total: -1.00 -68.54 395.86 -2.26 -70.80 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: 0.25 Total: 24.59 kcal Atomic # 6 Polarization: -37.43 SS G_CDS: 5.63 Total: -31.80 kcal Atomic # 7 Polarization: -78.18 SS G_CDS: -7.95 Total: -86.13 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -2.16 Total: -25.48 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 1.96 Total: 48.02 kcal Total: -68.54 -2.26 -70.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283451591.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.999 kcal (2) G-P(sol) polarization free energy of solvation -68.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds