Wall clock time and date at job start Tue Mar 31 2020 19:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46485 * 2 1 4 4 O 1.42895 * 109.47238 * 119.99912 * 2 1 3 5 5 C 1.53002 * 109.47195 * 240.00289 * 2 1 3 6 6 N 1.46900 * 109.46718 * 179.97438 * 5 2 1 7 7 C 1.46950 * 111.00460 * 293.79434 * 6 5 2 8 8 C 1.53048 * 109.36824 * 176.81183 * 7 6 5 9 9 N 1.46956 * 109.36148 * 58.40643 * 8 7 6 10 10 C 1.46902 * 111.00205 * 176.81101 * 9 8 7 11 11 C 1.50694 * 109.47046 * 293.79939 * 10 9 8 12 12 C 1.38301 * 119.93262 * 89.99487 * 11 10 9 13 13 C 1.38100 * 120.06954 * 180.02562 * 12 11 10 14 14 C 1.38880 * 119.93180 * 0.02562 * 13 12 11 15 15 O 1.35753 * 120.06801 * 179.97438 * 14 13 12 16 16 C 1.34821 * 117.00047 * 5.52931 * 15 14 13 17 17 H 1.07994 * 120.00555 * 354.94530 * 16 15 14 18 18 C 1.38658 * 119.99851 * 174.94789 * 16 15 14 19 19 N 1.31558 * 119.99765 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 119.99990 * 359.97438 * 18 16 15 21 21 H 1.48511 * 109.47027 * 90.00420 * 20 18 16 22 22 H 1.48498 * 109.47442 * 330.00675 * 20 18 16 23 23 H 1.48500 * 109.47423 * 210.00317 * 20 18 16 24 24 C 1.38883 * 119.86060 * 0.24761 * 14 13 12 25 25 C 1.38096 * 119.92664 * 359.50043 * 24 14 13 26 26 C 1.46959 * 110.87718 * 300.67901 * 9 8 7 27 27 H 1.08997 * 109.48702 * 299.34855 * 26 9 8 28 28 C 1.53005 * 109.48572 * 179.31248 * 26 9 8 29 29 C 1.46962 * 110.99514 * 169.99721 * 6 5 2 30 30 H 1.09005 * 109.46982 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47408 * 299.99649 * 1 2 3 32 32 H 1.08997 * 109.47232 * 59.99948 * 1 2 3 33 33 H 0.96696 * 113.99820 * 60.00080 * 4 2 1 34 34 H 1.08997 * 109.47224 * 59.99758 * 5 2 1 35 35 H 1.08997 * 109.46417 * 299.99736 * 5 2 1 36 36 H 1.09007 * 109.49264 * 296.78721 * 7 6 5 37 37 H 1.09007 * 109.48597 * 56.84416 * 7 6 5 38 38 H 1.08993 * 109.49220 * 298.43818 * 8 7 6 39 39 H 1.09001 * 109.49136 * 178.36686 * 8 7 6 40 40 H 1.08998 * 109.47490 * 173.79730 * 10 9 8 41 41 H 1.09001 * 109.47066 * 53.79770 * 10 9 8 42 42 H 1.08002 * 119.96682 * 0.04990 * 12 11 10 43 43 H 1.08005 * 120.03545 * 179.97438 * 13 12 11 44 44 H 0.97005 * 119.99347 * 180.02562 * 19 18 16 45 45 H 1.07999 * 120.03116 * 179.72180 * 24 14 13 46 46 H 1.08005 * 119.95909 * 180.27000 * 25 24 14 47 47 H 1.08994 * 109.47297 * 60.00094 * 28 26 9 48 48 H 1.09003 * 109.46847 * 179.97438 * 28 26 9 49 49 H 1.08998 * 109.47088 * 299.99161 * 28 26 9 50 50 H 1.09001 * 109.49048 * 63.22273 * 29 6 5 51 51 H 1.09001 * 109.48659 * 303.15491 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.0400 -0.7212 -1.2493 6 7 3.5090 -0.7206 -1.2495 7 6 4.0352 0.6434 -1.3980 8 6 5.5630 0.6101 -1.3137 9 7 6.0898 -0.2717 -2.3647 10 6 7.5588 -0.2712 -2.3650 11 6 8.0605 1.0933 -2.7617 12 6 8.2903 2.0527 -1.7924 13 6 8.7496 3.3042 -2.1528 14 6 8.9802 3.5991 -3.4902 15 8 9.4312 4.8287 -3.8476 16 6 9.7443 5.6797 -2.8498 17 1 9.5552 5.4016 -1.8236 18 6 10.3090 6.9120 -3.1413 19 7 10.6149 7.7422 -2.1677 20 14 10.6367 7.3928 -4.9164 21 1 9.4456 8.0864 -5.4693 22 1 10.9149 6.1731 -5.7164 23 1 11.8099 8.3013 -4.9747 24 6 8.7431 2.6354 -4.4617 25 6 8.2888 1.3841 -4.0944 26 6 5.5636 -1.6358 -2.2162 27 1 5.8659 -2.0389 -1.2497 28 6 6.1177 -2.5211 -3.3344 29 6 4.0358 -1.6025 -2.3005 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.7210 -1.5951 1.2328 34 1 1.6767 -0.2074 -2.1392 35 1 1.6767 -1.7488 -1.2492 36 1 3.7329 1.0466 -2.3646 37 1 3.6407 1.2741 -0.6012 38 1 5.8652 0.2325 -0.3370 39 1 5.9570 1.6169 -1.4526 40 1 7.9223 -1.0129 -3.0763 41 1 7.9224 -0.5161 -1.3671 42 1 8.1108 1.8228 -0.7525 43 1 8.9285 4.0532 -1.3954 44 1 11.0097 8.6045 -2.3717 45 1 8.9172 2.8632 -5.5029 46 1 8.1084 0.6328 -4.8490 47 1 7.2058 -2.5431 -3.2749 48 1 5.7277 -3.5329 -3.2237 49 1 5.8146 -2.1182 -4.3007 50 1 3.7336 -1.2249 -3.2773 51 1 3.6418 -2.6093 -2.1616 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283451595.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:54 Heat of formation + Delta-G solvation = -37.647133 kcal Electronic energy + Delta-G solvation = -29157.056387 eV Core-core repulsion = 25250.229156 eV Total energy + Delta-G solvation = -3906.827231 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -39.97784 -39.09074 -37.97153 -36.73847 -35.13352 -32.69397 -32.31406 -31.62125 -30.22895 -30.22035 -27.89017 -27.17027 -25.64784 -24.68088 -23.06537 -22.73960 -21.99685 -21.07874 -20.30693 -19.66128 -17.86150 -17.24136 -16.84228 -16.35130 -15.98499 -15.58525 -15.37807 -14.98895 -14.78448 -14.51580 -14.30001 -14.05370 -13.97492 -13.76531 -13.66211 -13.22766 -12.98425 -12.71905 -12.63579 -12.57085 -12.33516 -12.19005 -12.16149 -12.01384 -11.85544 -11.50530 -11.35490 -11.30223 -11.12195 -10.93381 -10.79579 -10.70271 -10.56873 -10.42358 -10.14753 -10.11224 -9.36875 -8.85873 -8.50487 -8.26397 -8.16785 -7.28576 -6.40803 -4.07312 2.15186 2.20728 3.23060 3.25734 3.40664 3.55250 3.92636 4.23173 4.24328 4.38977 4.55769 4.69924 4.77298 4.83802 4.87784 4.93689 4.93994 5.10292 5.12460 5.16752 5.24013 5.30422 5.33764 5.36282 5.40404 5.47394 5.52188 5.55384 5.66749 5.69318 5.69987 5.75962 5.79187 5.83037 5.92951 5.99708 6.06335 6.13173 6.16613 6.36677 6.59986 6.78821 6.81538 6.83290 7.03552 7.14374 7.23503 7.28786 7.36042 7.46715 7.63656 7.81520 8.05199 8.94633 9.57655 10.66929 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014831 B = 0.002467 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.484010 B =11347.516691 C =12511.712853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.105 3.895 3 H 0.098 0.902 4 O -0.549 6.549 5 C 0.023 3.977 6 N -0.531 5.531 7 C 0.057 3.943 8 C 0.057 3.943 9 N -0.529 5.529 10 C 0.107 3.893 11 C -0.168 4.168 12 C -0.068 4.068 13 C -0.221 4.221 14 C 0.161 3.839 15 O -0.219 6.219 16 C -0.389 4.389 17 H 0.106 0.894 18 C 0.063 3.937 19 N -0.880 5.880 20 Si 0.905 3.095 21 H -0.274 1.274 22 H -0.260 1.260 23 H -0.283 1.283 24 C -0.194 4.194 25 C -0.055 4.055 26 C 0.083 3.917 27 H 0.046 0.954 28 C -0.148 4.148 29 C 0.065 3.935 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.370 0.630 34 H 0.041 0.959 35 H 0.074 0.926 36 H 0.041 0.959 37 H 0.079 0.921 38 H 0.039 0.961 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.033 0.967 42 H 0.106 0.894 43 H 0.132 0.868 44 H 0.279 0.721 45 H 0.115 0.885 46 H 0.112 0.888 47 H 0.062 0.938 48 H 0.057 0.943 49 H 0.063 0.937 50 H 0.040 0.960 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.685 -20.697 1.016 26.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.045 3.955 3 H 0.116 0.884 4 O -0.353 6.353 5 C -0.105 4.105 6 N -0.255 5.255 7 C -0.071 4.071 8 C -0.071 4.071 9 N -0.254 5.254 10 C -0.019 4.019 11 C -0.169 4.169 12 C -0.087 4.087 13 C -0.240 4.240 14 C 0.109 3.891 15 O -0.124 6.124 16 C -0.464 4.464 17 H 0.123 0.877 18 C -0.140 4.140 19 N -0.518 5.518 20 Si 0.731 3.269 21 H -0.199 1.199 22 H -0.184 1.184 23 H -0.208 1.208 24 C -0.213 4.213 25 C -0.074 4.074 26 C -0.026 4.026 27 H 0.064 0.936 28 C -0.205 4.205 29 C -0.063 4.063 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.216 0.784 34 H 0.060 0.940 35 H 0.093 0.907 36 H 0.059 0.941 37 H 0.097 0.903 38 H 0.057 0.943 39 H 0.108 0.892 40 H 0.098 0.902 41 H 0.051 0.949 42 H 0.124 0.876 43 H 0.149 0.851 44 H 0.089 0.911 45 H 0.133 0.867 46 H 0.130 0.870 47 H 0.081 0.919 48 H 0.076 0.924 49 H 0.082 0.918 50 H 0.059 0.941 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -16.275 -19.788 0.972 25.639 hybrid contribution -0.177 -0.049 -0.704 0.727 sum -16.452 -19.837 0.269 25.772 Atomic orbital electron populations 1.22493 0.96403 1.02495 1.02927 1.21915 0.92099 0.96956 0.84516 0.88427 1.86632 1.77240 1.28510 1.42921 1.22842 0.88623 1.01112 0.97929 1.62103 1.06327 1.10117 1.46940 1.22220 0.95205 0.89273 1.00414 1.22178 0.93483 0.98714 0.92693 1.62240 1.07865 1.08093 1.47242 1.20897 0.86227 0.95307 0.99504 1.19143 1.08533 0.95656 0.93595 1.20664 0.97378 0.92785 0.97824 1.21237 1.08144 0.98155 0.96448 1.19138 0.92325 0.85124 0.92551 1.83570 1.72971 1.19605 1.36216 1.20765 1.41450 0.96154 0.88060 0.87653 1.24468 0.95384 0.94687 0.99491 1.69652 1.41146 1.09099 1.31952 0.86181 0.78098 0.79048 0.83575 1.19907 1.18359 1.20836 1.20204 1.09792 0.93077 0.98264 1.20431 0.96936 0.95122 0.94907 1.21611 0.93704 0.89404 0.97887 0.93582 1.21898 1.01317 0.98441 0.98894 1.22174 0.94408 0.96733 0.93016 0.92337 0.91516 0.91637 0.78370 0.94036 0.90712 0.94079 0.90289 0.94306 0.89164 0.90218 0.94907 0.87639 0.85066 0.91079 0.86674 0.87029 0.91912 0.92390 0.91761 0.94128 0.90846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.10 9.53 37.16 0.35 -0.75 16 2 C 0.10 0.84 3.47 -26.73 -0.09 0.74 16 3 H 0.10 0.89 6.49 -51.93 -0.34 0.56 16 4 O -0.55 -5.17 13.20 -35.23 -0.47 -5.63 16 5 C 0.02 0.19 4.62 -3.82 -0.02 0.17 16 6 N -0.53 -5.46 4.58 -234.46 -1.07 -6.53 16 7 C 0.06 0.66 5.41 -3.77 -0.02 0.64 16 8 C 0.06 0.76 5.25 -3.77 -0.02 0.74 16 9 N -0.53 -6.74 4.52 -227.93 -1.03 -7.77 16 10 C 0.11 1.43 4.88 -4.98 -0.02 1.40 16 11 C -0.17 -2.75 4.90 -104.58 -0.51 -3.26 16 12 C -0.07 -1.21 7.91 -39.61 -0.31 -1.53 16 13 C -0.22 -4.74 9.17 -39.39 -0.36 -5.10 16 14 C 0.16 3.72 6.65 -39.11 -0.26 3.46 16 15 O -0.22 -5.80 8.59 0.07 0.00 -5.80 16 16 C -0.39 -10.99 9.95 30.89 0.31 -10.69 16 17 H 0.11 3.04 5.44 -52.49 -0.29 2.76 16 18 C 0.06 1.77 5.49 -17.51 -0.10 1.67 16 19 N -0.88 -25.56 13.96 55.48 0.77 -24.78 16 20 Si 0.91 21.79 28.62 -169.99 -4.86 16.93 16 21 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 22 H -0.26 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 C -0.19 -3.86 9.99 -39.39 -0.39 -4.25 16 25 C -0.06 -0.94 9.69 -39.61 -0.38 -1.32 16 26 C 0.08 0.88 2.56 -67.65 -0.17 0.70 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 C -0.15 -1.31 8.89 37.16 0.33 -0.97 16 29 C 0.06 0.63 4.89 -3.76 -0.02 0.61 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.37 2.19 9.04 45.56 0.41 2.60 16 34 H 0.04 0.34 8.12 -51.93 -0.42 -0.09 16 35 H 0.07 0.50 8.03 -51.93 -0.42 0.09 16 36 H 0.04 0.51 8.14 -51.92 -0.42 0.09 16 37 H 0.08 0.90 6.34 -51.93 -0.33 0.57 16 38 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.09 1.34 5.95 -51.93 -0.31 1.03 16 40 H 0.08 0.96 5.67 -51.93 -0.29 0.67 16 41 H 0.03 0.44 8.06 -51.93 -0.42 0.02 16 42 H 0.11 1.69 7.99 -52.49 -0.42 1.27 16 43 H 0.13 2.98 5.64 -52.48 -0.30 2.69 16 44 H 0.28 7.48 8.31 -40.82 -0.34 7.14 16 45 H 0.12 2.15 8.06 -52.49 -0.42 1.73 16 46 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 47 H 0.06 0.56 6.15 -51.93 -0.32 0.24 16 48 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 49 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 50 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 51 H 0.07 0.60 8.07 -51.93 -0.42 0.18 16 LS Contribution 396.73 15.07 5.98 5.98 Total: -1.00 -30.49 396.73 -10.01 -40.50 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -7.64 Total: 4.83 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: -1.69 Total: -17.73 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: -1.33 Total: -39.09 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: -0.46 Total: -11.43 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.86 Total: 16.93 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.49 -10.01 -40.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283451595.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.857 kcal (2) G-P(sol) polarization free energy of solvation -30.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds