Wall clock time and date at job start Tue Mar 31 2020 19:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46898 * 2 1 4 4 N 1.46905 * 109.46984 * 240.00538 * 2 1 3 5 5 C 1.46899 * 110.99892 * 85.00122 * 4 2 1 6 6 C 1.52999 * 109.46935 * 179.97438 * 5 4 2 7 7 H 1.09000 * 109.47009 * 304.99960 * 6 5 4 8 8 O 1.42898 * 109.47352 * 64.99611 * 6 5 4 9 9 C 1.53004 * 109.47322 * 184.99723 * 6 5 4 10 10 N 1.46902 * 109.47258 * 180.02562 * 9 6 5 11 11 C 1.48532 * 111.00075 * 52.60240 * 10 9 6 12 12 C 1.54936 * 103.22543 * 159.71937 * 11 10 9 13 13 C 1.54591 * 102.92153 * 322.58912 * 12 11 10 14 14 C 1.47902 * 110.99832 * 169.99886 * 10 9 6 15 15 C 1.50698 * 109.47235 * 120.00177 * 2 1 3 16 16 C 1.38304 * 119.92928 * 79.72965 * 15 2 1 17 17 C 1.38094 * 120.06931 * 179.72634 * 16 15 2 18 18 C 1.38888 * 119.92896 * 0.54279 * 17 16 15 19 19 O 1.35755 * 120.06689 * 179.75049 * 18 17 16 20 20 C 1.34824 * 116.99229 * 174.44519 * 19 18 17 21 21 H 1.07997 * 120.01188 * 5.05192 * 20 19 18 22 22 C 1.38664 * 119.99411 * 185.05303 * 20 19 18 23 23 N 1.31549 * 119.99888 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 119.99812 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47138 * 60.00294 * 24 22 20 26 26 H 1.48497 * 109.47162 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47377 * 300.00249 * 24 22 20 28 28 C 1.38874 * 119.85898 * 359.73047 * 18 17 16 29 29 C 1.38098 * 119.93702 * 359.97438 * 28 18 17 30 30 H 1.08995 * 109.47192 * 299.99521 * 1 2 3 31 31 H 1.09002 * 109.47540 * 59.99968 * 1 2 3 32 32 H 1.09003 * 109.46905 * 179.97438 * 1 2 3 33 33 H 1.00895 * 110.99759 * 208.95301 * 4 2 1 34 34 H 1.09003 * 109.47025 * 299.99690 * 5 4 2 35 35 H 1.08993 * 109.47616 * 59.99584 * 5 4 2 36 36 H 0.96703 * 113.99898 * 60.00124 * 8 6 5 37 37 H 1.09000 * 109.46933 * 299.99654 * 9 6 5 38 38 H 1.08995 * 109.46930 * 60.00023 * 9 6 5 39 39 H 1.09000 * 110.66720 * 278.15845 * 11 10 9 40 40 H 1.09000 * 110.66452 * 41.28444 * 11 10 9 41 41 H 1.08996 * 110.72501 * 204.22425 * 12 11 10 42 42 H 1.09007 * 110.71937 * 80.94543 * 12 11 10 43 43 H 1.08997 * 110.30589 * 263.03688 * 13 12 11 44 44 H 1.09005 * 110.30766 * 140.87377 * 13 12 11 45 45 H 1.08993 * 109.91924 * 333.51228 * 14 10 9 46 46 H 1.09006 * 109.91424 * 94.60685 * 14 10 9 47 47 H 1.08003 * 119.96144 * 359.97438 * 16 15 2 48 48 H 1.08000 * 120.03878 * 180.27020 * 17 16 15 49 49 H 0.97002 * 120.00109 * 179.97438 * 23 22 20 50 50 H 1.08009 * 120.03247 * 179.97438 * 28 18 17 51 51 H 1.07994 * 119.96961 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 -1.1995 5 6 2.0824 0.2228 -2.3469 6 6 2.5962 -0.5326 -3.5742 7 1 3.5520 -1.0008 -3.3389 8 8 1.6513 -1.5387 -3.9444 9 6 2.7800 0.4464 -4.7356 10 7 3.2727 -0.2790 -5.9142 11 6 2.4060 -1.4452 -6.2222 12 6 2.7289 -1.7443 -7.7077 13 6 2.9066 -0.3333 -8.3137 14 6 3.2366 0.5794 -7.1182 15 6 2.0323 -0.7104 1.2304 16 6 2.0609 -2.0927 1.2658 17 6 2.5260 -2.7467 2.3896 18 6 2.9547 -2.0149 3.4895 19 8 3.4077 -2.6549 4.5977 20 6 3.9154 -1.8874 5.5830 21 1 3.8739 -0.8111 5.5052 22 6 4.4910 -2.4802 6.6966 23 7 4.5421 -3.7913 6.7913 24 14 5.1951 -1.4170 8.0615 25 1 4.1212 -0.5606 8.6258 26 1 5.7486 -2.2864 9.1306 27 1 6.2758 -0.5588 7.5131 28 6 2.9195 -0.6270 3.4529 29 6 2.4590 0.0212 2.3238 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.9172 -1.1204 -1.0289 34 1 1.0870 0.6165 -2.5525 35 1 2.7587 1.0464 -2.1182 36 1 0.7761 -1.1932 -4.1676 37 1 1.8242 0.9145 -4.9709 38 1 3.5007 1.2138 -4.4533 39 1 2.6676 -2.2958 -5.5928 40 1 1.3543 -1.1853 -6.1018 41 1 1.9002 -2.2675 -8.1848 42 1 3.6506 -2.3200 -7.7937 43 1 1.9835 -0.0088 -8.7939 44 1 3.7281 -0.3300 -9.0303 45 1 2.4647 1.3410 -7.0082 46 1 4.2072 1.0531 -7.2656 47 1 1.7228 -2.6612 0.4120 48 1 2.5521 -3.8260 2.4151 49 1 4.9451 -4.2060 7.5701 50 1 3.2519 -0.0552 4.3068 51 1 2.4318 1.1004 2.2946 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000305769746.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:38 Heat of formation + Delta-G solvation = -45.754990 kcal Electronic energy + Delta-G solvation = -28201.582840 eV Core-core repulsion = 24294.404026 eV Total energy + Delta-G solvation = -3907.178814 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -39.80237 -39.18388 -37.81895 -36.89830 -35.13585 -32.77342 -32.29559 -31.20887 -30.16643 -29.08846 -28.36009 -27.92440 -25.41455 -24.66465 -22.35794 -22.18804 -21.59115 -21.22887 -21.02032 -19.88249 -17.92864 -17.21255 -16.86919 -16.73444 -16.13934 -15.59327 -15.26245 -15.08034 -14.71220 -14.51653 -14.18633 -14.04359 -13.82040 -13.63767 -13.52587 -13.27313 -12.82822 -12.73532 -12.58331 -12.49413 -12.46311 -12.29244 -11.86339 -11.78004 -11.66621 -11.60966 -11.44887 -11.18899 -11.16814 -11.03060 -10.87600 -10.72934 -10.66116 -10.43373 -10.33801 -9.81512 -9.33733 -8.82336 -8.73721 -8.35996 -8.16134 -7.17475 -6.44809 -4.03793 2.23447 2.30685 3.12682 3.13762 3.16652 3.54399 3.96642 4.01978 4.26812 4.37320 4.43228 4.56579 4.59321 4.72736 4.85376 4.92300 4.99807 5.05324 5.09285 5.19429 5.22310 5.29911 5.33801 5.37814 5.43996 5.46975 5.47640 5.53858 5.67670 5.69044 5.70560 5.83449 5.86981 5.88828 5.95920 5.99239 6.01351 6.24369 6.39236 6.45986 6.58344 6.69310 6.74437 6.87064 7.03257 7.04865 7.26250 7.38262 7.43789 7.47316 7.55721 7.84182 8.00020 9.00583 9.71134 10.73077 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.024129 B = 0.001780 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.131556 B =15726.994676 C =15944.843974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.143 3.857 3 H 0.038 0.962 4 N -0.673 5.673 5 C 0.030 3.970 6 C 0.113 3.887 7 H 0.105 0.895 8 O -0.542 6.542 9 C 0.016 3.984 10 N -0.515 5.515 11 C 0.048 3.952 12 C -0.133 4.133 13 C -0.132 4.132 14 C 0.034 3.966 15 C -0.194 4.194 16 C -0.054 4.054 17 C -0.195 4.195 18 C 0.155 3.845 19 O -0.177 6.177 20 C -0.393 4.393 21 H 0.091 0.909 22 C 0.039 3.961 23 N -0.862 5.862 24 Si 0.941 3.059 25 H -0.270 1.270 26 H -0.278 1.278 27 H -0.270 1.270 28 C -0.235 4.235 29 C -0.066 4.066 30 H 0.054 0.946 31 H 0.043 0.957 32 H 0.062 0.938 33 H 0.347 0.653 34 H 0.071 0.929 35 H 0.035 0.965 36 H 0.366 0.634 37 H 0.037 0.963 38 H 0.083 0.917 39 H 0.101 0.899 40 H 0.042 0.958 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.064 0.936 44 H 0.069 0.931 45 H 0.041 0.959 46 H 0.076 0.924 47 H 0.120 0.880 48 H 0.116 0.884 49 H 0.270 0.730 50 H 0.126 0.874 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.552 9.847 -25.588 27.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.034 3.966 3 H 0.056 0.944 4 N -0.305 5.305 5 C -0.101 4.101 6 C 0.053 3.947 7 H 0.123 0.877 8 O -0.347 6.347 9 C -0.114 4.114 10 N -0.240 5.240 11 C -0.079 4.079 12 C -0.171 4.171 13 C -0.170 4.170 14 C -0.094 4.094 15 C -0.195 4.195 16 C -0.072 4.072 17 C -0.214 4.214 18 C 0.101 3.899 19 O -0.081 6.081 20 C -0.469 4.469 21 H 0.108 0.892 22 C -0.165 4.165 23 N -0.497 5.497 24 Si 0.765 3.235 25 H -0.195 1.195 26 H -0.203 1.203 27 H -0.195 1.195 28 C -0.255 4.255 29 C -0.084 4.084 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.166 0.834 34 H 0.089 0.911 35 H 0.053 0.947 36 H 0.213 0.787 37 H 0.055 0.945 38 H 0.101 0.899 39 H 0.119 0.881 40 H 0.060 0.940 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.082 0.918 44 H 0.088 0.912 45 H 0.059 0.941 46 H 0.095 0.905 47 H 0.138 0.862 48 H 0.134 0.866 49 H 0.080 0.920 50 H 0.143 0.857 51 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -5.027 8.636 -25.265 27.169 hybrid contribution -0.132 2.056 0.763 2.197 sum -5.159 10.692 -24.502 27.226 Atomic orbital electron populations 1.21762 0.94643 1.02301 1.00160 1.20148 0.95091 0.94319 0.87052 0.94370 1.60509 1.33968 1.32228 1.03838 1.22633 1.00778 0.94475 0.92192 1.21897 0.93620 0.88613 0.90606 0.87690 1.86742 1.23533 1.35003 1.89388 1.22970 0.99096 0.96983 0.92314 1.64787 1.49452 1.07293 1.02423 1.23389 0.94734 0.94790 0.95028 1.22623 1.01961 0.96445 0.96070 1.22389 1.01546 0.95584 0.97461 1.22897 1.01115 0.95330 0.90093 1.19246 1.10367 0.93824 0.96074 1.20512 0.96818 0.93363 0.96546 1.20266 1.08744 0.99463 0.92933 1.19433 0.91936 0.90922 0.87568 1.83982 1.67210 1.35054 1.21820 1.21270 1.38106 0.90657 0.96874 0.89171 1.25285 0.96736 0.96316 0.98160 1.70026 1.41501 1.08721 1.29432 0.85788 0.79261 0.78922 0.79498 1.19528 1.20258 1.19539 1.21107 1.09915 0.94435 1.00005 1.20574 0.97011 0.98047 0.92808 0.92746 0.93818 0.91902 0.83398 0.91055 0.94658 0.78657 0.94512 0.89883 0.88104 0.93963 0.91262 0.90912 0.91755 0.91174 0.94077 0.90527 0.86172 0.86557 0.91962 0.85666 0.87876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.61 9.39 37.16 0.35 -1.26 16 2 C 0.14 1.88 2.81 -68.86 -0.19 1.69 16 3 H 0.04 0.49 7.66 -51.93 -0.40 0.09 16 4 N -0.67 -7.93 5.65 -107.95 -0.61 -8.54 16 5 C 0.03 0.27 5.12 -3.83 -0.02 0.25 16 6 C 0.11 0.97 3.23 -26.73 -0.09 0.88 16 7 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 8 O -0.54 -4.93 9.55 -35.23 -0.34 -5.27 16 9 C 0.02 0.12 4.88 -3.82 -0.02 0.10 16 10 N -0.52 -4.40 5.40 -230.46 -1.24 -5.65 16 11 C 0.05 0.39 4.65 -1.90 -0.01 0.38 16 12 C -0.13 -0.93 7.06 -24.87 -0.18 -1.11 16 13 C -0.13 -0.83 6.93 -25.38 -0.18 -1.01 16 14 C 0.03 0.24 6.69 -2.76 -0.02 0.22 16 15 C -0.19 -3.23 4.71 -104.58 -0.49 -3.72 16 16 C -0.05 -0.96 9.00 -39.61 -0.36 -1.32 16 17 C -0.19 -4.14 9.99 -39.39 -0.39 -4.53 16 18 C 0.16 3.76 6.65 -39.11 -0.26 3.50 16 19 O -0.18 -5.09 9.76 0.05 0.00 -5.09 16 20 C -0.39 -11.01 9.49 30.89 0.29 -10.72 16 21 H 0.09 2.33 5.20 -52.49 -0.27 2.06 16 22 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 23 N -0.86 -25.36 13.67 55.48 0.76 -24.60 16 24 Si 0.94 20.55 29.55 -169.99 -5.02 15.52 16 25 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 26 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 27 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 28 C -0.24 -5.10 9.17 -39.40 -0.36 -5.46 16 29 C -0.07 -1.19 9.66 -39.61 -0.38 -1.57 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.04 0.46 7.45 -51.93 -0.39 0.07 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.35 4.43 7.99 -39.29 -0.31 4.12 16 34 H 0.07 0.61 7.44 -51.93 -0.39 0.22 16 35 H 0.04 0.32 8.05 -51.93 -0.42 -0.10 16 36 H 0.37 2.43 8.34 45.56 0.38 2.81 16 37 H 0.04 0.25 7.81 -51.93 -0.41 -0.15 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.10 0.98 6.83 -51.93 -0.35 0.63 16 40 H 0.04 0.32 6.81 -51.93 -0.35 -0.04 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 43 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.04 0.28 7.57 -51.93 -0.39 -0.12 16 46 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.12 1.94 7.72 -52.48 -0.41 1.54 16 48 H 0.12 2.42 8.06 -52.49 -0.42 1.99 16 49 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 50 H 0.13 2.73 5.64 -52.48 -0.30 2.43 16 51 H 0.10 1.60 8.03 -52.49 -0.42 1.18 16 LS Contribution 402.02 15.07 6.06 6.06 Total: -1.00 -30.46 402.02 -10.58 -41.04 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -7.79 Total: 9.21 kcal Atomic # 6 Polarization: -20.29 SS G_CDS: -2.40 Total: -22.69 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: -1.09 Total: -38.79 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: -0.34 Total: -10.36 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -30.46 -10.58 -41.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305769746.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.714 kcal (2) G-P(sol) polarization free energy of solvation -30.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds