Wall clock time and date at job start Tue Mar 31 2020 19:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46898 * 2 1 4 4 N 1.46905 * 109.46984 * 240.00538 * 2 1 3 5 5 C 1.46899 * 110.99892 * 85.00122 * 4 2 1 6 6 C 1.52999 * 109.46935 * 179.97438 * 5 4 2 7 7 H 1.09000 * 109.47009 * 304.99960 * 6 5 4 8 8 O 1.42898 * 109.47352 * 64.99611 * 6 5 4 9 9 C 1.53004 * 109.47322 * 184.99723 * 6 5 4 10 10 N 1.46902 * 109.47258 * 180.02562 * 9 6 5 11 11 C 1.48532 * 111.00075 * 52.60240 * 10 9 6 12 12 C 1.54936 * 103.22543 * 159.71937 * 11 10 9 13 13 C 1.54591 * 102.92153 * 322.58912 * 12 11 10 14 14 C 1.47902 * 110.99832 * 169.99886 * 10 9 6 15 15 C 1.50698 * 109.47235 * 120.00177 * 2 1 3 16 16 C 1.38304 * 119.92928 * 79.72965 * 15 2 1 17 17 C 1.38094 * 120.06931 * 179.72634 * 16 15 2 18 18 C 1.38888 * 119.92896 * 0.54279 * 17 16 15 19 19 O 1.35755 * 120.06689 * 179.75049 * 18 17 16 20 20 C 1.34824 * 116.99229 * 174.44519 * 19 18 17 21 21 H 1.07997 * 120.01188 * 5.05192 * 20 19 18 22 22 C 1.38664 * 119.99411 * 185.05303 * 20 19 18 23 23 N 1.31549 * 119.99888 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 119.99812 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47138 * 60.00294 * 24 22 20 26 26 H 1.48497 * 109.47162 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47377 * 300.00249 * 24 22 20 28 28 C 1.38874 * 119.85898 * 359.73047 * 18 17 16 29 29 C 1.38098 * 119.93702 * 359.97438 * 28 18 17 30 30 H 1.08995 * 109.47192 * 299.99521 * 1 2 3 31 31 H 1.09002 * 109.47540 * 59.99968 * 1 2 3 32 32 H 1.09003 * 109.46905 * 179.97438 * 1 2 3 33 33 H 1.00895 * 110.99759 * 208.95301 * 4 2 1 34 34 H 1.09003 * 109.47025 * 299.99690 * 5 4 2 35 35 H 1.08993 * 109.47616 * 59.99584 * 5 4 2 36 36 H 0.96703 * 113.99898 * 60.00124 * 8 6 5 37 37 H 1.09000 * 109.46933 * 299.99654 * 9 6 5 38 38 H 1.08995 * 109.46930 * 60.00023 * 9 6 5 39 39 H 1.09000 * 110.66720 * 278.15845 * 11 10 9 40 40 H 1.09000 * 110.66452 * 41.28444 * 11 10 9 41 41 H 1.08996 * 110.72501 * 204.22425 * 12 11 10 42 42 H 1.09007 * 110.71937 * 80.94543 * 12 11 10 43 43 H 1.08997 * 110.30589 * 263.03688 * 13 12 11 44 44 H 1.09005 * 110.30766 * 140.87377 * 13 12 11 45 45 H 1.08993 * 109.91924 * 333.51228 * 14 10 9 46 46 H 1.09006 * 109.91424 * 94.60685 * 14 10 9 47 47 H 1.08003 * 119.96144 * 359.97438 * 16 15 2 48 48 H 1.08000 * 120.03878 * 180.27020 * 17 16 15 49 49 H 0.97002 * 120.00109 * 179.97438 * 23 22 20 50 50 H 1.08009 * 120.03247 * 179.97438 * 28 18 17 51 51 H 1.07994 * 119.96961 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 -1.1995 5 6 2.0824 0.2228 -2.3469 6 6 2.5962 -0.5326 -3.5742 7 1 3.5520 -1.0008 -3.3389 8 8 1.6513 -1.5387 -3.9444 9 6 2.7800 0.4464 -4.7356 10 7 3.2727 -0.2790 -5.9142 11 6 2.4060 -1.4452 -6.2222 12 6 2.7289 -1.7443 -7.7077 13 6 2.9066 -0.3333 -8.3137 14 6 3.2366 0.5794 -7.1182 15 6 2.0323 -0.7104 1.2304 16 6 2.0609 -2.0927 1.2658 17 6 2.5260 -2.7467 2.3896 18 6 2.9547 -2.0149 3.4895 19 8 3.4077 -2.6549 4.5977 20 6 3.9154 -1.8874 5.5830 21 1 3.8739 -0.8111 5.5052 22 6 4.4910 -2.4802 6.6966 23 7 4.5421 -3.7913 6.7913 24 14 5.1951 -1.4170 8.0615 25 1 4.1212 -0.5606 8.6258 26 1 5.7486 -2.2864 9.1306 27 1 6.2758 -0.5588 7.5131 28 6 2.9195 -0.6270 3.4529 29 6 2.4590 0.0212 2.3238 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.9172 -1.1204 -1.0289 34 1 1.0870 0.6165 -2.5525 35 1 2.7587 1.0464 -2.1182 36 1 0.7761 -1.1932 -4.1676 37 1 1.8242 0.9145 -4.9709 38 1 3.5007 1.2138 -4.4533 39 1 2.6676 -2.2958 -5.5928 40 1 1.3543 -1.1853 -6.1018 41 1 1.9002 -2.2675 -8.1848 42 1 3.6506 -2.3200 -7.7937 43 1 1.9835 -0.0088 -8.7939 44 1 3.7281 -0.3300 -9.0303 45 1 2.4647 1.3410 -7.0082 46 1 4.2072 1.0531 -7.2656 47 1 1.7228 -2.6612 0.4120 48 1 2.5521 -3.8260 2.4151 49 1 4.9451 -4.2060 7.5701 50 1 3.2519 -0.0552 4.3068 51 1 2.4318 1.1004 2.2946 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000305769746.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:37 Heat of formation + Delta-G solvation = -67.810168 kcal Electronic energy + Delta-G solvation = -28202.539224 eV Core-core repulsion = 24294.404026 eV Total energy + Delta-G solvation = -3908.135198 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.90180 -40.37353 -39.08484 -37.93936 -36.33473 -34.28452 -33.38986 -32.25962 -31.76421 -29.64940 -29.51530 -28.99505 -27.36185 -25.47800 -23.81699 -23.38941 -22.57359 -21.88197 -21.57903 -21.24312 -19.75930 -18.84438 -17.84304 -17.39309 -16.97676 -16.51205 -16.38088 -16.18205 -16.09756 -15.60644 -15.49160 -15.39562 -15.27474 -14.78317 -14.45317 -14.30338 -14.10308 -14.01485 -13.78907 -13.51890 -13.31357 -13.29201 -13.09714 -12.94971 -12.78087 -12.54461 -12.37620 -12.33101 -12.20076 -12.15207 -12.12883 -11.84343 -11.70330 -11.58563 -11.38943 -11.18190 -10.78410 -10.50037 -9.77537 -9.32846 -9.27134 -8.91185 -8.46935 -6.15358 0.60186 0.68473 1.34418 1.45259 1.50913 2.17721 2.79384 2.90661 3.16180 3.29834 3.52454 3.63677 3.77832 3.84223 3.87954 4.02455 4.10405 4.16977 4.19993 4.22230 4.27972 4.40713 4.43818 4.50908 4.60787 4.62342 4.70022 4.73380 4.75710 4.76583 4.84912 4.95735 4.97450 5.01070 5.02681 5.12577 5.13697 5.17063 5.19857 5.29547 5.33338 5.37364 5.45624 5.57920 5.71171 5.72489 6.01068 6.02700 6.10946 6.20611 6.26456 6.44663 6.93142 6.97412 7.78791 8.76066 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.024129 B = 0.001780 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.131556 B =15726.994676 C =15944.843974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.147 3.853 3 H 0.054 0.946 4 N -0.679 5.679 5 C 0.035 3.965 6 C 0.122 3.878 7 H 0.085 0.915 8 O -0.555 6.555 9 C 0.022 3.978 10 N -0.534 5.534 11 C 0.052 3.948 12 C -0.134 4.134 13 C -0.129 4.129 14 C 0.032 3.968 15 C -0.165 4.165 16 C -0.045 4.045 17 C -0.207 4.207 18 C 0.114 3.886 19 O -0.233 6.233 20 C -0.415 4.415 21 H 0.102 0.898 22 C -0.024 4.024 23 N -0.921 5.921 24 Si 1.019 2.981 25 H -0.257 1.257 26 H -0.272 1.272 27 H -0.258 1.258 28 C -0.243 4.243 29 C -0.064 4.064 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.050 0.950 33 H 0.340 0.660 34 H 0.086 0.914 35 H 0.042 0.958 36 H 0.378 0.622 37 H 0.050 0.950 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.050 0.950 41 H 0.079 0.921 42 H 0.063 0.937 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.049 0.951 46 H 0.075 0.925 47 H 0.143 0.857 48 H 0.109 0.891 49 H 0.272 0.728 50 H 0.119 0.881 51 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.685 12.992 -27.979 31.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.038 3.962 3 H 0.072 0.928 4 N -0.310 5.310 5 C -0.095 4.095 6 C 0.062 3.938 7 H 0.103 0.897 8 O -0.362 6.362 9 C -0.107 4.107 10 N -0.259 5.259 11 C -0.076 4.076 12 C -0.172 4.172 13 C -0.167 4.167 14 C -0.096 4.096 15 C -0.166 4.166 16 C -0.063 4.063 17 C -0.226 4.226 18 C 0.063 3.937 19 O -0.140 6.140 20 C -0.491 4.491 21 H 0.119 0.881 22 C -0.221 4.221 23 N -0.559 5.559 24 Si 0.838 3.162 25 H -0.181 1.181 26 H -0.196 1.196 27 H -0.182 1.182 28 C -0.262 4.262 29 C -0.082 4.082 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.159 0.841 34 H 0.104 0.896 35 H 0.061 0.939 36 H 0.227 0.773 37 H 0.068 0.932 38 H 0.103 0.897 39 H 0.098 0.902 40 H 0.068 0.932 41 H 0.097 0.903 42 H 0.081 0.919 43 H 0.093 0.907 44 H 0.092 0.908 45 H 0.067 0.933 46 H 0.093 0.907 47 H 0.161 0.839 48 H 0.127 0.873 49 H 0.081 0.919 50 H 0.136 0.864 51 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -6.196 11.816 -27.721 30.765 hybrid contribution 0.075 1.150 1.127 1.612 sum -6.121 12.966 -26.594 30.213 Atomic orbital electron populations 1.21730 0.93441 1.01984 1.01430 1.20174 0.95863 0.94523 0.85664 0.92772 1.60523 1.33656 1.32904 1.03936 1.22657 1.01796 0.94034 0.91014 1.21720 0.92709 0.88455 0.90945 0.89739 1.86732 1.24379 1.35593 1.89466 1.22898 0.99767 0.96522 0.91558 1.64752 1.50046 1.07884 1.03243 1.23279 0.95025 0.94051 0.95204 1.22627 1.01913 0.97004 0.95655 1.22389 1.02277 0.94777 0.97244 1.22931 1.01346 0.95442 0.89845 1.19763 1.06458 0.93392 0.96944 1.20749 0.95547 0.94261 0.95737 1.20483 1.09161 0.99476 0.93475 1.19955 0.93554 0.92507 0.87647 1.83946 1.69966 1.36547 1.23536 1.21782 1.38504 0.91384 0.97413 0.88106 1.26606 0.96892 0.97832 1.00779 1.70180 1.43930 1.11004 1.30755 0.84647 0.78806 0.77051 0.75702 1.18105 1.19633 1.18198 1.21221 1.10284 0.93435 1.01245 1.20945 0.95666 0.99952 0.91632 0.92780 0.91367 0.93034 0.84147 0.89604 0.93950 0.77335 0.93219 0.89677 0.90200 0.93170 0.90259 0.91854 0.90658 0.90764 0.93307 0.90690 0.83934 0.87263 0.91853 0.86362 0.84261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.61 9.39 71.98 0.68 -1.93 16 2 C 0.15 3.27 2.81 44.17 0.12 3.39 16 3 H 0.05 1.10 7.66 -2.39 -0.02 1.08 16 4 N -0.68 -13.70 5.65 -495.45 -2.80 -16.50 16 5 C 0.03 0.51 5.12 86.30 0.44 0.95 16 6 C 0.12 1.81 3.23 30.60 0.10 1.91 16 7 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 8 O -0.56 -8.94 9.55 -148.98 -1.42 -10.37 16 9 C 0.02 0.27 4.88 86.30 0.42 0.70 16 10 N -0.53 -8.21 5.40 -883.03 -4.76 -12.97 16 11 C 0.05 0.76 4.65 86.65 0.40 1.16 16 12 C -0.13 -1.68 7.06 31.80 0.22 -1.46 16 13 C -0.13 -1.37 6.93 31.47 0.22 -1.15 16 14 C 0.03 0.40 6.69 86.44 0.58 0.97 16 15 C -0.16 -5.03 4.71 -19.83 -0.09 -5.12 16 16 C -0.04 -1.54 9.00 22.25 0.20 -1.34 16 17 C -0.21 -9.04 9.99 22.39 0.22 -8.81 16 18 C 0.11 5.75 6.65 22.58 0.15 5.90 16 19 O -0.23 -14.29 9.76 -22.74 -0.22 -14.51 16 20 C -0.41 -24.43 9.49 67.92 0.64 -23.78 16 21 H 0.10 5.42 5.20 -2.91 -0.02 5.41 16 22 C -0.02 -1.36 5.49 84.84 0.47 -0.89 16 23 N -0.92 -57.15 13.67 21.62 0.30 -56.86 16 24 Si 1.02 43.13 29.55 68.60 2.03 45.16 16 25 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 26 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 27 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 28 C -0.24 -10.58 9.17 22.39 0.21 -10.38 16 29 C -0.06 -2.15 9.66 22.25 0.21 -1.94 16 30 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.07 1.09 7.45 -2.39 -0.02 1.08 16 32 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.34 7.79 7.99 -89.70 -0.72 7.08 16 34 H 0.09 1.05 7.44 -2.39 -0.02 1.03 16 35 H 0.04 0.59 8.05 -2.39 -0.02 0.57 16 36 H 0.38 3.94 8.34 -74.06 -0.62 3.32 16 37 H 0.05 0.51 7.81 -2.39 -0.02 0.49 16 38 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.08 1.51 6.83 -2.39 -0.02 1.50 16 40 H 0.05 0.64 6.81 -2.39 -0.02 0.62 16 41 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 43 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 45 H 0.05 0.52 7.57 -2.39 -0.02 0.50 16 46 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 47 H 0.14 4.30 7.72 -2.91 -0.02 4.28 16 48 H 0.11 4.81 8.06 -2.91 -0.02 4.78 16 49 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 50 H 0.12 5.24 5.64 -2.91 -0.02 5.23 16 51 H 0.14 3.75 8.03 -2.91 -0.02 3.73 16 Total: -1.00 -70.88 402.02 -2.09 -72.97 By element: Atomic # 1 Polarization: 35.31 SS G_CDS: -0.40 Total: 34.91 kcal Atomic # 6 Polarization: -47.02 SS G_CDS: 5.20 Total: -41.82 kcal Atomic # 7 Polarization: -79.06 SS G_CDS: -7.27 Total: -86.33 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: -1.64 Total: -24.87 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -70.88 -2.09 -72.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305769746.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.156 kcal (2) G-P(sol) polarization free energy of solvation -70.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds