Wall clock time and date at job start Tue Mar 31 2020 19:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46898 * 2 1 4 4 N 1.46905 * 109.46984 * 240.00538 * 2 1 3 5 5 C 1.46899 * 110.99892 * 85.00122 * 4 2 1 6 6 C 1.52999 * 109.46935 * 179.97438 * 5 4 2 7 7 H 1.09005 * 109.46971 * 59.99591 * 6 5 4 8 8 O 1.42902 * 109.47323 * 299.99825 * 6 5 4 9 9 C 1.52996 * 109.47436 * 179.97438 * 6 5 4 10 10 N 1.46904 * 109.47584 * 184.99915 * 9 6 5 11 11 C 1.48529 * 110.99744 * 52.60401 * 10 9 6 12 12 C 1.54933 * 103.22916 * 159.72210 * 11 10 9 13 13 C 1.54603 * 102.91943 * 322.58556 * 12 11 10 14 14 C 1.47903 * 110.99846 * 169.99927 * 10 9 6 15 15 C 1.50698 * 109.47235 * 120.00177 * 2 1 3 16 16 C 1.38304 * 119.92928 * 79.72965 * 15 2 1 17 17 C 1.38094 * 120.06931 * 179.72634 * 16 15 2 18 18 C 1.38888 * 119.92896 * 0.54279 * 17 16 15 19 19 O 1.35755 * 120.06689 * 179.75049 * 18 17 16 20 20 C 1.34824 * 116.99229 * 174.44519 * 19 18 17 21 21 H 1.07997 * 120.01188 * 5.05192 * 20 19 18 22 22 C 1.38664 * 119.99411 * 185.05303 * 20 19 18 23 23 N 1.31549 * 119.99888 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 119.99812 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47138 * 60.00294 * 24 22 20 26 26 H 1.48497 * 109.47162 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47377 * 300.00249 * 24 22 20 28 28 C 1.38874 * 119.85898 * 359.73047 * 18 17 16 29 29 C 1.38098 * 119.93702 * 359.97438 * 28 18 17 30 30 H 1.09003 * 109.46905 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47192 * 299.99521 * 1 2 3 32 32 H 1.09002 * 109.47540 * 59.99968 * 1 2 3 33 33 H 1.00895 * 110.99588 * 321.04311 * 4 2 1 34 34 H 1.09003 * 109.47025 * 299.99690 * 5 4 2 35 35 H 1.08993 * 109.47616 * 59.99584 * 5 4 2 36 36 H 0.96703 * 113.99537 * 300.00227 * 8 6 5 37 37 H 1.09010 * 109.47280 * 304.99979 * 9 6 5 38 38 H 1.09000 * 109.47219 * 64.99249 * 9 6 5 39 39 H 1.09004 * 110.66730 * 278.15597 * 11 10 9 40 40 H 1.08997 * 110.66920 * 41.28555 * 11 10 9 41 41 H 1.08994 * 110.72638 * 204.22673 * 12 11 10 42 42 H 1.09004 * 110.72258 * 80.93581 * 12 11 10 43 43 H 1.09002 * 110.30506 * 263.03690 * 13 12 11 44 44 H 1.09003 * 110.30944 * 140.87073 * 13 12 11 45 45 H 1.08992 * 109.92142 * 333.50728 * 14 10 9 46 46 H 1.09004 * 109.91496 * 94.60754 * 14 10 9 47 47 H 1.08003 * 119.96144 * 359.97438 * 16 15 2 48 48 H 1.08000 * 120.03878 * 180.27020 * 17 16 15 49 49 H 0.97002 * 120.00109 * 179.97438 * 23 22 20 50 50 H 1.08009 * 120.03247 * 179.97438 * 28 18 17 51 51 H 1.07994 * 119.96961 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 -1.1995 5 6 2.0824 0.2228 -2.3469 6 6 2.5962 -0.5326 -3.5742 7 1 1.9201 -1.3564 -3.8031 8 8 3.9013 -1.0483 -3.3044 9 6 2.6610 0.4204 -4.7694 10 7 3.0392 -0.3302 -5.9743 11 6 2.1517 -1.5050 -6.1699 12 6 2.3288 -1.8368 -7.6729 13 6 2.4400 -0.4392 -8.3246 14 6 2.8815 0.5008 -7.1876 15 6 2.0323 -0.7104 1.2304 16 6 2.0609 -2.0927 1.2658 17 6 2.5260 -2.7467 2.3896 18 6 2.9547 -2.0149 3.4895 19 8 3.4077 -2.6549 4.5977 20 6 3.9154 -1.8874 5.5830 21 1 3.8739 -0.8111 5.5052 22 6 4.4910 -2.4802 6.6966 23 7 4.5421 -3.7913 6.7913 24 14 5.1951 -1.4170 8.0615 25 1 4.1212 -0.5606 8.6258 26 1 5.7486 -2.2864 9.1306 27 1 6.2758 -0.5588 7.5131 28 6 2.9195 -0.6270 3.4529 29 6 2.4590 0.0212 2.3238 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.4495 -1.4978 -1.4101 34 1 1.0870 0.6165 -2.5525 35 1 2.7587 1.0464 -2.1182 36 1 4.5564 -0.3693 -3.0923 37 1 1.6847 0.8814 -4.9200 38 1 3.4027 1.1954 -4.5764 39 1 2.4774 -2.3406 -5.5505 40 1 1.1157 -1.2449 -5.9529 41 1 1.4597 -2.3723 -8.0547 42 1 3.2402 -2.4120 -7.8361 43 1 1.4728 -0.1277 -8.7191 44 1 3.1873 -0.4502 -9.1181 45 1 2.1207 1.2629 -7.0195 46 1 3.8308 0.9734 -7.4400 47 1 1.7228 -2.6612 0.4120 48 1 2.5521 -3.8260 2.4151 49 1 4.9451 -4.2060 7.5701 50 1 3.2519 -0.0552 4.3068 51 1 2.4318 1.1004 2.2946 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000305769747.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:41 Heat of formation + Delta-G solvation = -71.667955 kcal Electronic energy + Delta-G solvation = -28145.589461 eV Core-core repulsion = 24237.286976 eV Total energy + Delta-G solvation = -3908.302484 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.83700 -40.24446 -39.09552 -38.01645 -36.41066 -34.25964 -33.37655 -32.19596 -31.71435 -29.91215 -29.46111 -28.72879 -27.33530 -25.44229 -23.95598 -23.50366 -22.88059 -21.73041 -21.57049 -21.20397 -19.72483 -18.80188 -17.85952 -17.22629 -16.78454 -16.61746 -16.45157 -16.22365 -16.01093 -15.61767 -15.52202 -15.41971 -15.07226 -14.86717 -14.44532 -14.38993 -14.09788 -14.03999 -13.91000 -13.53557 -13.49029 -13.16934 -13.08619 -12.89436 -12.73663 -12.57058 -12.40174 -12.29845 -12.21448 -12.15319 -12.07217 -12.01779 -11.78146 -11.59787 -11.44725 -11.13415 -10.76276 -10.67955 -9.71948 -9.33511 -9.21492 -8.81969 -8.44632 -6.12716 0.65672 0.76785 1.35092 1.46425 1.51744 2.19511 2.79335 2.90208 3.17588 3.33079 3.56820 3.69441 3.73096 3.81126 3.97841 4.00209 4.08999 4.11939 4.20836 4.26531 4.26614 4.33432 4.39221 4.42316 4.48826 4.62639 4.64169 4.67303 4.71573 4.75005 4.76539 4.90673 4.92118 4.95550 4.96694 5.07548 5.14126 5.15635 5.19157 5.22197 5.28641 5.30751 5.33893 5.63452 5.75658 5.81757 5.95502 6.05694 6.07137 6.22314 6.31179 6.51120 6.99865 7.02230 7.82670 8.78685 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.024791 B = 0.001794 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.162665 B =15602.697974 C =15858.447572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.146 3.854 3 H 0.088 0.912 4 N -0.682 5.682 5 C 0.034 3.966 6 C 0.118 3.882 7 H 0.089 0.911 8 O -0.559 6.559 9 C 0.021 3.979 10 N -0.526 5.526 11 C 0.032 3.968 12 C -0.124 4.124 13 C -0.129 4.129 14 C 0.031 3.969 15 C -0.140 4.140 16 C -0.046 4.046 17 C -0.208 4.208 18 C 0.109 3.891 19 O -0.236 6.236 20 C -0.414 4.414 21 H 0.101 0.899 22 C -0.025 4.025 23 N -0.922 5.922 24 Si 1.019 2.981 25 H -0.256 1.256 26 H -0.272 1.272 27 H -0.258 1.258 28 C -0.242 4.242 29 C -0.069 4.069 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.342 0.658 34 H 0.051 0.949 35 H 0.078 0.922 36 H 0.380 0.620 37 H 0.052 0.948 38 H 0.084 0.916 39 H 0.072 0.928 40 H 0.048 0.952 41 H 0.083 0.917 42 H 0.066 0.934 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.049 0.951 46 H 0.076 0.924 47 H 0.138 0.862 48 H 0.107 0.893 49 H 0.272 0.728 50 H 0.117 0.883 51 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.343 12.924 -28.662 32.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.036 3.964 3 H 0.106 0.894 4 N -0.313 5.313 5 C -0.096 4.096 6 C 0.058 3.942 7 H 0.106 0.894 8 O -0.365 6.365 9 C -0.108 4.108 10 N -0.250 5.250 11 C -0.096 4.096 12 C -0.163 4.163 13 C -0.167 4.167 14 C -0.097 4.097 15 C -0.141 4.141 16 C -0.064 4.064 17 C -0.227 4.227 18 C 0.059 3.941 19 O -0.143 6.143 20 C -0.490 4.490 21 H 0.118 0.882 22 C -0.222 4.222 23 N -0.561 5.561 24 Si 0.838 3.162 25 H -0.181 1.181 26 H -0.196 1.196 27 H -0.182 1.182 28 C -0.261 4.261 29 C -0.087 4.087 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.161 0.839 34 H 0.069 0.931 35 H 0.097 0.903 36 H 0.228 0.772 37 H 0.070 0.930 38 H 0.103 0.897 39 H 0.090 0.910 40 H 0.066 0.934 41 H 0.101 0.899 42 H 0.085 0.915 43 H 0.095 0.905 44 H 0.095 0.905 45 H 0.067 0.933 46 H 0.095 0.905 47 H 0.156 0.844 48 H 0.125 0.875 49 H 0.081 0.919 50 H 0.135 0.865 51 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -7.356 11.905 -28.366 31.630 hybrid contribution -1.013 0.807 0.936 1.598 sum -8.369 12.713 -27.429 31.369 Atomic orbital electron populations 1.22434 0.95570 1.02410 1.02585 1.20162 0.92880 0.96561 0.86750 0.89399 1.60372 1.58158 1.09591 1.03187 1.22648 1.00727 0.95677 0.90538 1.21890 0.85476 0.95711 0.91138 0.89355 1.86595 1.19633 1.38304 1.91950 1.22970 1.00513 0.96521 0.90832 1.64742 1.50902 1.07327 1.02042 1.23245 0.94845 0.94103 0.97393 1.22491 1.02481 0.97310 0.93976 1.22405 1.02148 0.94484 0.97666 1.22951 1.01008 0.95631 0.90068 1.19657 1.05189 0.93172 0.96071 1.20640 0.96188 0.94401 0.95189 1.20455 1.09311 0.99335 0.93604 1.19925 0.93939 0.92539 0.87716 1.83940 1.70244 1.36519 1.23601 1.21778 1.38436 0.91367 0.97393 0.88190 1.26606 0.96953 0.97843 1.00811 1.70185 1.44138 1.11005 1.30748 0.84646 0.78805 0.77043 0.75694 1.18068 1.19626 1.18248 1.21211 1.10224 0.93410 1.01286 1.20921 0.96112 0.99957 0.91712 0.92594 0.92187 0.91031 0.83894 0.93122 0.90319 0.77217 0.92963 0.89722 0.90989 0.93350 0.89886 0.91470 0.90531 0.90525 0.93277 0.90521 0.84447 0.87489 0.91921 0.86504 0.84234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.07 9.14 71.98 0.66 -2.41 16 2 C 0.15 3.15 2.79 44.17 0.12 3.27 16 3 H 0.09 1.74 7.66 -2.39 -0.02 1.72 16 4 N -0.68 -13.58 5.58 -495.45 -2.76 -16.34 16 5 C 0.03 0.49 5.15 86.30 0.44 0.93 16 6 C 0.12 1.79 2.89 30.59 0.09 1.88 16 7 H 0.09 1.44 6.52 -2.38 -0.02 1.43 16 8 O -0.56 -11.83 13.15 -148.98 -1.96 -13.79 16 9 C 0.02 0.26 4.66 86.30 0.40 0.66 16 10 N -0.53 -7.97 5.34 -883.02 -4.72 -12.69 16 11 C 0.03 0.45 5.08 86.65 0.44 0.89 16 12 C -0.12 -1.45 7.06 31.80 0.22 -1.22 16 13 C -0.13 -1.27 6.93 31.48 0.22 -1.05 16 14 C 0.03 0.37 6.70 86.45 0.58 0.95 16 15 C -0.14 -4.36 4.96 -19.83 -0.10 -4.46 16 16 C -0.05 -1.61 9.31 22.25 0.21 -1.40 16 17 C -0.21 -9.32 9.99 22.39 0.22 -9.10 16 18 C 0.11 5.63 6.65 22.58 0.15 5.78 16 19 O -0.24 -14.73 9.76 -22.74 -0.22 -14.95 16 20 C -0.41 -24.78 9.49 67.92 0.64 -24.14 16 21 H 0.10 5.48 5.20 -2.91 -0.02 5.47 16 22 C -0.03 -1.46 5.49 84.84 0.47 -0.99 16 23 N -0.92 -58.01 13.67 21.62 0.30 -57.71 16 24 Si 1.02 43.79 29.55 68.60 2.03 45.82 16 25 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 26 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 27 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 28 C -0.24 -10.84 9.17 22.39 0.21 -10.64 16 29 C -0.07 -2.39 9.66 22.25 0.21 -2.17 16 30 H 0.05 1.05 8.13 -2.39 -0.02 1.03 16 31 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.07 0.97 7.45 -2.39 -0.02 0.95 16 33 H 0.34 6.53 7.82 -89.70 -0.70 5.83 16 34 H 0.05 0.58 7.44 -2.39 -0.02 0.56 16 35 H 0.08 1.10 8.05 -2.39 -0.02 1.08 16 36 H 0.38 6.35 9.05 -74.06 -0.67 5.68 16 37 H 0.05 0.55 7.81 -2.38 -0.02 0.53 16 38 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.07 1.25 7.56 -2.39 -0.02 1.23 16 40 H 0.05 0.60 8.01 -2.39 -0.02 0.58 16 41 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 43 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 44 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.05 0.50 7.57 -2.39 -0.02 0.49 16 46 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 47 H 0.14 3.99 7.25 -2.91 -0.02 3.97 16 48 H 0.11 4.82 8.06 -2.91 -0.02 4.80 16 49 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 50 H 0.12 5.31 5.64 -2.91 -0.02 5.29 16 51 H 0.14 3.84 8.03 -2.91 -0.02 3.81 16 Total: -1.00 -74.90 406.04 -2.59 -77.49 By element: Atomic # 1 Polarization: 35.83 SS G_CDS: -0.44 Total: 35.39 kcal Atomic # 6 Polarization: -48.41 SS G_CDS: 5.19 Total: -43.22 kcal Atomic # 7 Polarization: -79.55 SS G_CDS: -7.19 Total: -86.74 kcal Atomic # 8 Polarization: -26.56 SS G_CDS: -2.18 Total: -28.74 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -74.90 -2.59 -77.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305769747.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.821 kcal (2) G-P(sol) polarization free energy of solvation -74.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds