Wall clock time and date at job start Tue Mar 31 2020 19:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46892 * 2 1 4 4 O 1.42900 * 109.46800 * 119.99907 * 2 1 3 5 5 C 1.42897 * 114.00397 * 269.99738 * 4 2 1 6 6 C 1.52996 * 109.47481 * 180.02562 * 5 4 2 7 7 C 1.53001 * 109.47032 * 180.02562 * 6 5 4 8 8 N 1.46505 * 109.47114 * 179.97438 * 7 6 5 9 9 C 1.34779 * 120.00115 * 179.97438 * 8 7 6 10 10 O 1.21279 * 119.99948 * 0.02562 * 9 8 7 11 11 C 1.50699 * 119.99752 * 180.02562 * 9 8 7 12 12 H 1.08999 * 109.47308 * 320.00435 * 11 9 8 13 13 N 1.46896 * 109.46994 * 200.00270 * 11 9 8 14 14 C 1.53002 * 109.46724 * 80.00346 * 11 9 8 15 15 C 1.52998 * 109.46796 * 184.99581 * 14 11 9 16 16 C 1.50700 * 109.47185 * 179.97438 * 15 14 11 17 17 H 1.07998 * 120.00114 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99913 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00463 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99855 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47281 * 59.99975 * 20 18 16 22 22 H 1.48503 * 109.47205 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.46940 * 300.00037 * 20 18 16 24 24 C 1.50700 * 109.47363 * 240.00091 * 2 1 3 25 25 C 1.38231 * 119.99825 * 279.86689 * 24 2 1 26 26 C 1.38243 * 120.00070 * 180.02562 * 25 24 2 27 27 C 1.38235 * 119.99602 * 0.07188 * 26 25 24 28 28 C 1.38230 * 120.00326 * 359.97438 * 27 26 25 29 29 C 1.38234 * 120.00292 * 99.99827 * 24 2 1 30 30 H 1.08996 * 109.47169 * 299.99750 * 1 2 3 31 31 H 1.08996 * 109.47197 * 60.00263 * 1 2 3 32 32 H 1.09003 * 109.46892 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47350 * 300.00820 * 5 4 2 34 34 H 1.09009 * 109.46869 * 60.00129 * 5 4 2 35 35 H 1.09000 * 109.47138 * 300.00001 * 6 5 4 36 36 H 1.08995 * 109.47143 * 60.00069 * 6 5 4 37 37 H 1.08993 * 109.47262 * 299.99683 * 7 6 5 38 38 H 1.09004 * 109.47034 * 60.00436 * 7 6 5 39 39 H 0.97001 * 119.99869 * 0.02562 * 8 7 6 40 40 H 1.00892 * 111.00406 * 176.05194 * 13 11 9 41 41 H 1.00901 * 110.99897 * 299.99998 * 13 11 9 42 42 H 1.08999 * 109.47485 * 304.99472 * 14 11 9 43 43 H 1.08998 * 109.47361 * 64.99964 * 14 11 9 44 44 H 1.09006 * 109.47639 * 300.00015 * 15 14 11 45 45 H 1.09010 * 109.47193 * 60.00191 * 15 14 11 46 46 H 0.96998 * 120.00485 * 180.02562 * 19 18 16 47 47 H 1.08001 * 120.00367 * 0.10906 * 25 24 2 48 48 H 1.08000 * 119.99728 * 180.34119 * 26 25 24 49 49 H 1.08000 * 119.99297 * 179.97438 * 27 26 25 50 50 H 1.08001 * 120.00350 * 179.97438 * 28 27 26 51 51 H 1.08007 * 119.99474 * 359.97438 * 29 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2001 0.1829 2.2941 6 6 2.7090 -0.6406 3.4789 7 6 2.9158 0.2764 4.6860 8 7 3.4026 -0.5122 5.8207 9 6 3.6572 0.0892 6.9996 10 8 3.4830 1.2833 7.1213 11 6 4.1585 -0.7220 8.1666 12 1 3.6361 -1.6782 8.1955 13 7 3.9088 0.0104 9.4152 14 6 5.6608 -0.9661 8.0101 15 6 6.1458 -1.8927 9.1268 16 6 7.6254 -2.1336 8.9724 17 1 8.1658 -1.6718 8.1594 18 6 8.2892 -2.9438 9.8691 19 7 7.6311 -3.5067 10.8589 20 14 10.1234 -3.2420 9.6781 21 1 10.8465 -1.9476 9.7607 22 1 10.5939 -4.1424 10.7612 23 1 10.3876 -3.8734 8.3603 24 6 2.0324 -0.7104 -1.2305 25 6 2.0694 -2.0918 -1.2643 26 6 2.5308 -2.7435 -2.3928 27 6 2.9565 -2.0136 -3.4868 28 6 2.9204 -0.6322 -3.4527 29 6 2.4588 0.0194 -2.3243 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.9319 0.9513 2.0451 34 1 1.2537 0.6547 2.5589 35 1 1.9774 -1.4093 3.7281 36 1 3.6553 -1.1121 3.2139 37 1 3.6472 1.0452 4.4371 38 1 1.9692 0.7474 4.9509 39 1 3.5423 -1.4672 5.7232 40 1 4.1772 -0.5399 10.2171 41 1 4.3828 0.9011 9.4130 42 1 5.8548 -1.4300 7.0431 43 1 6.1915 -0.0159 8.0702 44 1 5.9519 -1.4287 10.0940 45 1 5.6151 -2.8429 9.0667 46 1 8.0981 -4.0764 11.4899 47 1 1.7366 -2.6620 -0.4096 48 1 2.5545 -3.8228 -2.4212 49 1 3.3173 -2.5228 -4.3683 50 1 3.2534 -0.0619 -4.3073 51 1 2.4315 1.0988 -2.2971 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424065021.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:06 Heat of formation + Delta-G solvation = -85.537403 kcal Electronic energy + Delta-G solvation = -27154.420189 eV Core-core repulsion = 23245.516280 eV Total energy + Delta-G solvation = -3908.903909 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -39.99304 -39.60824 -38.26148 -35.89285 -35.19005 -33.38427 -32.84338 -31.50579 -31.19812 -29.88000 -29.53342 -27.06903 -25.45460 -24.11355 -23.49176 -22.84696 -21.91244 -21.13186 -20.69923 -19.70365 -17.52339 -17.22314 -17.11925 -16.40048 -16.22272 -15.91077 -15.77494 -15.16310 -14.82768 -14.64820 -14.63696 -14.43649 -14.04908 -13.94092 -13.71390 -13.45659 -13.22799 -12.99210 -12.98607 -12.73489 -12.58781 -12.20230 -12.09908 -11.97047 -11.70154 -11.55541 -11.43580 -11.27413 -11.07481 -11.05148 -10.90693 -10.70662 -9.98465 -9.98311 -9.91397 -9.29614 -9.26553 -9.21412 -9.11644 -8.99137 -8.43625 -8.18160 -6.08272 -4.11474 0.94763 1.06170 2.94449 2.96439 3.28725 3.33509 3.35924 3.40055 3.54185 4.28582 4.39553 4.48242 4.60781 4.64436 4.68410 4.75158 4.78307 4.80721 4.91441 5.08353 5.12837 5.13775 5.19111 5.19926 5.23943 5.27841 5.33925 5.36724 5.48384 5.59252 5.61413 5.68818 5.73964 5.76906 5.84547 5.88844 6.09689 6.17692 6.19201 6.29116 6.49461 6.53358 6.63200 6.86673 6.87784 7.43723 7.51797 7.61566 7.70875 7.88515 7.91557 8.31238 8.47017 8.94211 9.53319 11.02520 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011763 B = 0.001728 C = 0.001552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.723256 B =16197.343285 C =18040.075768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.128 3.872 3 H 0.069 0.931 4 O -0.376 6.376 5 C 0.067 3.933 6 C -0.131 4.131 7 C 0.125 3.875 8 N -0.735 5.735 9 C 0.526 3.474 10 O -0.540 6.540 11 C 0.075 3.925 12 H 0.097 0.903 13 N -0.831 5.831 14 C -0.137 4.137 15 C 0.024 3.976 16 C -0.525 4.525 17 H 0.054 0.946 18 C 0.059 3.941 19 N -0.893 5.893 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C -0.087 4.087 25 C -0.091 4.091 26 C -0.123 4.123 27 C -0.120 4.120 28 C -0.122 4.122 29 C -0.113 4.113 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.403 0.597 40 H 0.354 0.646 41 H 0.345 0.655 42 H 0.056 0.944 43 H 0.054 0.946 44 H 0.018 0.982 45 H 0.019 0.981 46 H 0.262 0.738 47 H 0.127 0.873 48 H 0.123 0.877 49 H 0.121 0.879 50 H 0.122 0.878 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.944 5.040 -27.103 31.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.070 3.930 3 H 0.087 0.913 4 O -0.296 6.296 5 C -0.010 4.010 6 C -0.168 4.168 7 C 0.001 3.999 8 N -0.388 5.388 9 C 0.313 3.687 10 O -0.415 6.415 11 C -0.040 4.040 12 H 0.115 0.885 13 N -0.363 5.363 14 C -0.177 4.177 15 C -0.013 4.013 16 C -0.563 4.563 17 H 0.072 0.928 18 C -0.143 4.143 19 N -0.532 5.532 20 Si 0.721 3.279 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.202 1.202 24 C -0.087 4.087 25 C -0.109 4.109 26 C -0.141 4.141 27 C -0.138 4.138 28 C -0.140 4.140 29 C -0.131 4.131 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.237 0.763 40 H 0.170 0.830 41 H 0.158 0.842 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.036 0.964 45 H 0.037 0.963 46 H 0.072 0.928 47 H 0.145 0.855 48 H 0.141 0.859 49 H 0.139 0.861 50 H 0.140 0.860 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -15.795 5.596 -27.050 31.820 hybrid contribution 2.155 -0.550 -0.058 2.225 sum -13.640 5.046 -27.108 30.763 Atomic orbital electron populations 1.22270 0.94813 1.03243 1.02373 1.20840 0.93693 0.94968 0.83505 0.91286 1.87919 1.86622 1.35322 1.19722 1.22394 0.99734 0.92866 0.86032 1.21676 1.03208 0.99034 0.92930 1.21085 0.99912 0.93950 0.85000 1.45948 1.69131 1.12372 1.11378 1.20904 0.75915 0.88353 0.83577 1.90630 1.51853 1.15594 1.83458 1.21472 0.97212 0.96402 0.88958 0.88541 1.58742 1.66369 1.08145 1.03044 1.22381 0.91778 1.01401 1.02159 1.19106 0.96152 0.93723 0.92327 1.21145 0.93763 1.29243 1.12136 0.92775 1.25014 0.98376 0.95712 0.95212 1.69935 1.36107 1.31927 1.15205 0.86639 0.85380 0.78168 0.77718 1.20231 1.21219 1.20221 1.19739 1.00087 0.94269 0.94590 1.21030 0.98116 0.93888 0.97873 1.21222 0.99224 1.00097 0.93540 1.21199 0.99725 0.94257 0.98592 1.21100 1.00153 0.94693 0.98102 1.20977 0.99050 0.99717 0.93329 0.91905 0.91470 0.91498 0.92864 0.92871 0.90245 0.90138 0.91566 0.91544 0.76271 0.83048 0.84158 0.92515 0.92698 0.96385 0.96300 0.92825 0.85474 0.85930 0.86104 0.85979 0.86095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.08 9.51 37.16 0.35 -0.73 16 2 C 0.13 0.97 2.93 -27.88 -0.08 0.89 16 3 H 0.07 0.45 7.65 -51.93 -0.40 0.05 16 4 O -0.38 -3.45 9.31 -35.23 -0.33 -3.78 16 5 C 0.07 0.53 5.75 37.16 0.21 0.74 16 6 C -0.13 -1.11 5.70 -26.73 -0.15 -1.26 16 7 C 0.12 1.34 5.67 -4.04 -0.02 1.31 16 8 N -0.73 -9.31 5.56 -60.29 -0.33 -9.65 16 9 C 0.53 8.70 7.08 -10.98 -0.08 8.62 16 10 O -0.54 -10.58 16.25 5.56 0.09 -10.49 16 11 C 0.07 1.27 3.21 -68.87 -0.22 1.05 16 12 H 0.10 1.54 8.14 -51.93 -0.42 1.11 16 13 N -0.83 -14.44 8.94 -5.66 -0.05 -14.49 16 14 C -0.14 -2.69 4.78 -26.73 -0.13 -2.82 16 15 C 0.02 0.58 4.74 -27.88 -0.13 0.45 16 16 C -0.52 -14.41 9.11 -34.44 -0.31 -14.73 16 17 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -26.02 13.29 55.43 0.74 -25.28 16 20 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 C -0.09 -0.72 4.97 -104.63 -0.52 -1.24 16 25 C -0.09 -0.78 9.36 -39.58 -0.37 -1.15 16 26 C -0.12 -0.94 10.05 -39.58 -0.40 -1.33 16 27 C -0.12 -0.84 10.05 -39.59 -0.40 -1.24 16 28 C -0.12 -0.84 10.05 -39.59 -0.40 -1.24 16 29 C -0.11 -0.83 9.67 -39.58 -0.38 -1.21 16 30 H 0.06 0.37 7.87 -51.93 -0.41 -0.04 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.05 0.40 8.09 -51.93 -0.42 -0.02 16 34 H 0.05 0.37 7.87 -51.92 -0.41 -0.04 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.40 4.30 8.47 -40.82 -0.35 3.95 16 40 H 0.35 6.15 7.55 -39.30 -0.30 5.85 16 41 H 0.35 6.09 8.58 -39.29 -0.34 5.75 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 44 H 0.02 0.45 6.87 -51.93 -0.36 0.10 16 45 H 0.02 0.48 8.14 -51.92 -0.42 0.05 16 46 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 47 H 0.13 1.07 7.78 -52.49 -0.41 0.66 16 48 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 49 H 0.12 0.61 8.06 -52.49 -0.42 0.18 16 50 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 51 H 0.12 0.66 8.04 -52.48 -0.42 0.24 16 LS Contribution 422.67 15.07 6.37 6.37 Total: -1.00 -32.65 422.67 -10.50 -43.15 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: -8.84 Total: 10.21 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: -3.13 Total: -12.34 kcal Atomic # 7 Polarization: -49.77 SS G_CDS: 0.35 Total: -49.41 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: -0.24 Total: -14.27 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -32.65 -10.50 -43.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424065021.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.384 kcal (2) G-P(sol) polarization free energy of solvation -32.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds