Wall clock time and date at job start Tue Mar 31 2020 19:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46892 * 2 1 4 4 O 1.42900 * 109.46800 * 119.99907 * 2 1 3 5 5 C 1.42897 * 114.00397 * 269.99738 * 4 2 1 6 6 C 1.52996 * 109.47481 * 180.02562 * 5 4 2 7 7 C 1.53001 * 109.47032 * 180.02562 * 6 5 4 8 8 N 1.46505 * 109.47114 * 179.97438 * 7 6 5 9 9 C 1.34779 * 120.00115 * 179.97438 * 8 7 6 10 10 O 1.21279 * 119.99948 * 0.02562 * 9 8 7 11 11 C 1.50699 * 119.99752 * 180.02562 * 9 8 7 12 12 H 1.08999 * 109.47308 * 320.00435 * 11 9 8 13 13 N 1.46896 * 109.46994 * 200.00270 * 11 9 8 14 14 C 1.53002 * 109.46724 * 80.00346 * 11 9 8 15 15 C 1.52998 * 109.46796 * 184.99581 * 14 11 9 16 16 C 1.50700 * 109.47185 * 179.97438 * 15 14 11 17 17 H 1.07998 * 120.00114 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99913 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00463 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99855 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47281 * 59.99975 * 20 18 16 22 22 H 1.48503 * 109.47205 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.46940 * 300.00037 * 20 18 16 24 24 C 1.50700 * 109.47363 * 240.00091 * 2 1 3 25 25 C 1.38231 * 119.99825 * 279.86689 * 24 2 1 26 26 C 1.38243 * 120.00070 * 180.02562 * 25 24 2 27 27 C 1.38235 * 119.99602 * 0.07188 * 26 25 24 28 28 C 1.38230 * 120.00326 * 359.97438 * 27 26 25 29 29 C 1.38234 * 120.00292 * 99.99827 * 24 2 1 30 30 H 1.08996 * 109.47169 * 299.99750 * 1 2 3 31 31 H 1.08996 * 109.47197 * 60.00263 * 1 2 3 32 32 H 1.09003 * 109.46892 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47350 * 300.00820 * 5 4 2 34 34 H 1.09009 * 109.46869 * 60.00129 * 5 4 2 35 35 H 1.09000 * 109.47138 * 300.00001 * 6 5 4 36 36 H 1.08995 * 109.47143 * 60.00069 * 6 5 4 37 37 H 1.08993 * 109.47262 * 299.99683 * 7 6 5 38 38 H 1.09004 * 109.47034 * 60.00436 * 7 6 5 39 39 H 0.97001 * 119.99869 * 0.02562 * 8 7 6 40 40 H 1.00892 * 111.00406 * 176.05194 * 13 11 9 41 41 H 1.00901 * 110.99897 * 299.99998 * 13 11 9 42 42 H 1.08999 * 109.47485 * 304.99472 * 14 11 9 43 43 H 1.08998 * 109.47361 * 64.99964 * 14 11 9 44 44 H 1.09006 * 109.47639 * 300.00015 * 15 14 11 45 45 H 1.09010 * 109.47193 * 60.00191 * 15 14 11 46 46 H 0.96998 * 120.00485 * 180.02562 * 19 18 16 47 47 H 1.08001 * 120.00367 * 0.10906 * 25 24 2 48 48 H 1.08000 * 119.99728 * 180.34119 * 26 25 24 49 49 H 1.08000 * 119.99297 * 179.97438 * 27 26 25 50 50 H 1.08001 * 120.00350 * 179.97438 * 28 27 26 51 51 H 1.08007 * 119.99474 * 359.97438 * 29 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2001 0.1829 2.2941 6 6 2.7090 -0.6406 3.4789 7 6 2.9158 0.2764 4.6860 8 7 3.4026 -0.5122 5.8207 9 6 3.6572 0.0892 6.9996 10 8 3.4830 1.2833 7.1213 11 6 4.1585 -0.7220 8.1666 12 1 3.6361 -1.6782 8.1955 13 7 3.9088 0.0104 9.4152 14 6 5.6608 -0.9661 8.0101 15 6 6.1458 -1.8927 9.1268 16 6 7.6254 -2.1336 8.9724 17 1 8.1658 -1.6718 8.1594 18 6 8.2892 -2.9438 9.8691 19 7 7.6311 -3.5067 10.8589 20 14 10.1234 -3.2420 9.6781 21 1 10.8465 -1.9476 9.7607 22 1 10.5939 -4.1424 10.7612 23 1 10.3876 -3.8734 8.3603 24 6 2.0324 -0.7104 -1.2305 25 6 2.0694 -2.0918 -1.2643 26 6 2.5308 -2.7435 -2.3928 27 6 2.9565 -2.0136 -3.4868 28 6 2.9204 -0.6322 -3.4527 29 6 2.4588 0.0194 -2.3243 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.9319 0.9513 2.0451 34 1 1.2537 0.6547 2.5589 35 1 1.9774 -1.4093 3.7281 36 1 3.6553 -1.1121 3.2139 37 1 3.6472 1.0452 4.4371 38 1 1.9692 0.7474 4.9509 39 1 3.5423 -1.4672 5.7232 40 1 4.1772 -0.5399 10.2171 41 1 4.3828 0.9011 9.4130 42 1 5.8548 -1.4300 7.0431 43 1 6.1915 -0.0159 8.0702 44 1 5.9519 -1.4287 10.0940 45 1 5.6151 -2.8429 9.0667 46 1 8.0981 -4.0764 11.4899 47 1 1.7366 -2.6620 -0.4096 48 1 2.5545 -3.8228 -2.4212 49 1 3.3173 -2.5228 -4.3683 50 1 3.2534 -0.0619 -4.3073 51 1 2.4315 1.0988 -2.2971 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424065021.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:05 Heat of formation + Delta-G solvation = -106.379438 kcal Electronic energy + Delta-G solvation = -27155.323967 eV Core-core repulsion = 23245.516280 eV Total energy + Delta-G solvation = -3909.807687 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.93222 -40.51329 -38.88081 -37.22998 -36.44496 -34.83082 -34.06726 -32.31140 -31.75143 -31.67652 -30.05924 -28.46275 -26.76580 -25.17740 -24.48301 -23.44990 -22.68879 -22.35608 -21.69484 -21.02983 -18.86739 -18.11178 -17.99489 -17.75198 -17.16296 -16.86155 -16.53290 -16.41805 -16.11294 -15.89640 -15.56446 -15.36995 -15.18554 -15.02992 -14.57342 -14.55448 -14.22623 -14.02046 -13.95296 -13.73141 -13.53991 -13.38481 -13.10922 -12.93419 -12.84738 -12.67496 -12.64792 -12.53747 -12.15089 -12.09230 -11.88136 -11.79540 -11.70651 -11.59596 -11.31442 -10.75334 -10.58371 -10.55343 -10.11305 -9.81170 -9.66444 -9.63766 -8.21043 -6.31410 0.40372 0.51230 1.40024 1.41436 1.49422 1.61534 2.03812 2.40078 2.66826 2.93013 3.12402 3.73066 3.75855 3.78298 3.94562 3.95517 4.07130 4.14124 4.14775 4.17681 4.24399 4.26708 4.30574 4.33163 4.49888 4.50689 4.62187 4.63955 4.67545 4.68772 4.80668 4.85283 4.87337 5.08845 5.09508 5.10475 5.12738 5.17515 5.25233 5.43692 5.46969 5.57212 5.63105 5.63938 5.66320 5.81027 6.07916 6.11084 6.21627 6.28248 6.48193 6.53325 6.83857 7.23123 7.37502 8.89351 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011763 B = 0.001728 C = 0.001552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.723256 B =16197.343285 C =18040.075768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.125 3.875 3 H 0.080 0.920 4 O -0.393 6.393 5 C 0.066 3.934 6 C -0.119 4.119 7 C 0.126 3.874 8 N -0.720 5.720 9 C 0.526 3.474 10 O -0.573 6.573 11 C 0.080 3.920 12 H 0.110 0.890 13 N -0.831 5.831 14 C -0.121 4.121 15 C 0.029 3.971 16 C -0.546 4.546 17 H 0.055 0.945 18 C 0.005 3.995 19 N -0.926 5.926 20 Si 0.959 3.041 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.268 1.268 24 C -0.100 4.100 25 C -0.110 4.110 26 C -0.134 4.134 27 C -0.128 4.128 28 C -0.128 4.128 29 C -0.121 4.121 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.414 0.586 40 H 0.353 0.647 41 H 0.343 0.657 42 H 0.066 0.934 43 H 0.044 0.956 44 H 0.003 0.997 45 H 0.003 0.997 46 H 0.264 0.736 47 H 0.120 0.880 48 H 0.134 0.866 49 H 0.140 0.860 50 H 0.143 0.857 51 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.717 5.285 -28.944 32.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.067 3.933 3 H 0.098 0.902 4 O -0.313 6.313 5 C -0.011 4.011 6 C -0.157 4.157 7 C 0.002 3.998 8 N -0.373 5.373 9 C 0.313 3.687 10 O -0.451 6.451 11 C -0.035 4.035 12 H 0.128 0.872 13 N -0.362 5.362 14 C -0.161 4.161 15 C -0.008 4.008 16 C -0.584 4.584 17 H 0.073 0.927 18 C -0.194 4.194 19 N -0.566 5.566 20 Si 0.784 3.216 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.193 1.193 24 C -0.100 4.100 25 C -0.128 4.128 26 C -0.152 4.152 27 C -0.146 4.146 28 C -0.146 4.146 29 C -0.139 4.139 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.251 0.749 40 H 0.168 0.832 41 H 0.156 0.844 42 H 0.085 0.915 43 H 0.062 0.938 44 H 0.021 0.979 45 H 0.021 0.979 46 H 0.073 0.927 47 H 0.138 0.862 48 H 0.152 0.848 49 H 0.158 0.842 50 H 0.161 0.839 51 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -15.580 5.818 -28.929 33.369 hybrid contribution 2.055 -0.640 0.468 2.203 sum -13.525 5.178 -28.462 31.934 Atomic orbital electron populations 1.22234 0.94087 1.02855 1.03100 1.20961 0.94273 0.95243 0.82774 0.90211 1.87891 1.86887 1.36171 1.20367 1.22412 1.00457 0.92662 0.85567 1.21540 1.03263 0.98648 0.92216 1.21172 0.99618 0.94077 0.84902 1.45864 1.67543 1.13123 1.10735 1.20706 0.75988 0.87726 0.84279 1.90619 1.53643 1.16799 1.84080 1.21418 0.95501 0.97236 0.89343 0.87177 1.58762 1.66149 1.08068 1.03202 1.22132 0.93504 0.99655 1.00779 1.18980 0.94780 0.93768 0.93293 1.21598 0.95492 1.29181 1.12137 0.92721 1.25869 1.03035 0.95535 0.94921 1.70050 1.37904 1.32607 1.15991 0.85598 0.79831 0.78206 0.78000 1.19644 1.20828 1.19258 1.19925 1.00505 0.94327 0.95269 1.21115 0.99161 0.94350 0.98194 1.21451 0.99221 1.00935 0.93585 1.21502 0.99408 0.94628 0.99030 1.21434 0.99574 0.94944 0.98651 1.21248 0.98790 1.00706 0.93196 0.91361 0.90514 0.92428 0.92399 0.91754 0.89721 0.90430 0.92078 0.91460 0.74923 0.83250 0.84354 0.91499 0.93760 0.97904 0.97882 0.92743 0.86206 0.84795 0.84224 0.83919 0.84408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.95 9.51 71.98 0.68 -1.26 16 2 C 0.12 1.77 2.93 29.85 0.09 1.85 16 3 H 0.08 0.92 7.65 -2.39 -0.02 0.91 16 4 O -0.39 -6.85 9.31 -148.98 -1.39 -8.23 16 5 C 0.07 0.95 5.75 71.98 0.41 1.36 16 6 C -0.12 -1.83 5.70 30.59 0.17 -1.66 16 7 C 0.13 2.51 5.67 86.38 0.49 3.00 16 8 N -0.72 -17.13 5.56 -463.05 -2.57 -19.70 16 9 C 0.53 16.86 7.08 87.66 0.62 17.48 16 10 O -0.57 -22.08 16.25 -3.03 -0.05 -22.13 16 11 C 0.08 2.67 3.21 44.17 0.14 2.81 16 12 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 13 N -0.83 -28.70 8.94 -171.81 -1.54 -30.24 16 14 C -0.12 -4.68 4.78 30.59 0.15 -4.54 16 15 C 0.03 1.42 4.74 29.85 0.14 1.56 16 16 C -0.55 -29.99 9.11 25.60 0.23 -29.76 16 17 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 18 C 0.00 0.28 5.46 84.66 0.46 0.74 16 19 N -0.93 -54.27 13.29 21.45 0.28 -53.99 16 20 Si 0.96 43.41 29.54 68.60 2.03 45.43 16 21 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 22 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 23 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 24 C -0.10 -1.59 4.97 -19.87 -0.10 -1.69 16 25 C -0.11 -1.88 9.36 22.27 0.21 -1.67 16 26 C -0.13 -1.98 10.05 22.27 0.22 -1.75 16 27 C -0.13 -1.63 10.05 22.27 0.22 -1.41 16 28 C -0.13 -1.56 10.05 22.27 0.22 -1.34 16 29 C -0.12 -1.62 9.67 22.27 0.22 -1.41 16 30 H 0.07 0.71 7.87 -2.39 -0.02 0.69 16 31 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.06 0.78 8.09 -2.38 -0.02 0.76 16 34 H 0.06 0.78 7.87 -2.38 -0.02 0.76 16 35 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 39 H 0.41 8.04 8.47 -92.71 -0.79 7.26 16 40 H 0.35 12.33 7.55 -89.70 -0.68 11.65 16 41 H 0.34 12.13 8.58 -89.69 -0.77 11.36 16 42 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 43 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.00 0.14 6.87 -2.38 -0.02 0.12 16 45 H 0.00 0.15 8.14 -2.38 -0.02 0.13 16 46 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 47 H 0.12 2.10 7.78 -2.91 -0.02 2.07 16 48 H 0.13 1.51 8.06 -2.91 -0.02 1.49 16 49 H 0.14 1.15 8.06 -2.91 -0.02 1.13 16 50 H 0.14 1.06 8.06 -2.91 -0.02 1.04 16 51 H 0.14 1.26 8.04 -2.91 -0.02 1.23 16 Total: -1.00 -69.08 422.67 0.05 -69.03 By element: Atomic # 1 Polarization: 38.80 SS G_CDS: -1.31 Total: 37.49 kcal Atomic # 6 Polarization: -22.26 SS G_CDS: 4.59 Total: -17.67 kcal Atomic # 7 Polarization: -100.10 SS G_CDS: -3.82 Total: -103.92 kcal Atomic # 8 Polarization: -28.92 SS G_CDS: -1.44 Total: -30.36 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Total: -69.08 0.05 -69.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424065021.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.353 kcal (2) G-P(sol) polarization free energy of solvation -69.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds