Wall clock time and date at job start Tue Mar 31 2020 19:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47024 * 2 1 4 4 O 1.42903 * 109.46884 * 240.00367 * 2 1 3 5 5 C 1.42900 * 114.00107 * 89.99881 * 4 2 1 6 6 C 1.53000 * 109.46989 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47273 * 180.02562 * 6 5 4 8 8 N 1.46499 * 109.47555 * 179.97438 * 7 6 5 9 9 C 1.34777 * 120.00199 * 180.02562 * 8 7 6 10 10 O 1.21283 * 119.99750 * 359.97438 * 9 8 7 11 11 C 1.50702 * 119.99928 * 180.27479 * 9 8 7 12 12 H 1.08995 * 109.47357 * 39.71838 * 11 9 8 13 13 N 1.46895 * 109.46992 * 159.72213 * 11 9 8 14 14 C 1.52995 * 109.46732 * 279.72068 * 11 9 8 15 15 C 1.53009 * 109.47136 * 174.99999 * 14 11 9 16 16 C 1.50698 * 109.47293 * 179.97438 * 15 14 11 17 17 H 1.08004 * 119.99938 * 0.02562 * 16 15 14 18 18 C 1.37874 * 119.99700 * 179.97438 * 16 15 14 19 19 N 1.31512 * 120.00235 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99716 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47082 * 60.00547 * 20 18 16 22 22 H 1.48505 * 109.47032 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47219 * 300.00379 * 20 18 16 24 24 C 1.50702 * 109.47407 * 120.00163 * 2 1 3 25 25 C 1.38235 * 119.99809 * 84.72502 * 24 2 1 26 26 C 1.38233 * 119.99840 * 179.80953 * 25 24 2 27 27 C 1.38234 * 119.99958 * 0.40113 * 26 25 24 28 28 C 1.38234 * 120.00064 * 359.85256 * 27 26 25 29 29 C 1.38226 * 119.99953 * 264.99798 * 24 2 1 30 30 H 1.09004 * 109.46785 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46889 * 299.99656 * 1 2 3 32 32 H 1.08995 * 109.47241 * 60.00089 * 1 2 3 33 33 H 1.08992 * 109.47160 * 60.00256 * 5 4 2 34 34 H 1.08997 * 109.47199 * 299.99793 * 5 4 2 35 35 H 1.08998 * 109.47307 * 59.99602 * 6 5 4 36 36 H 1.09005 * 109.46653 * 299.99537 * 6 5 4 37 37 H 1.08998 * 109.47382 * 59.99521 * 7 6 5 38 38 H 1.09002 * 109.47216 * 299.99958 * 7 6 5 39 39 H 0.97000 * 119.99484 * 359.97438 * 8 7 6 40 40 H 1.00901 * 111.00088 * 60.00223 * 13 11 9 41 41 H 1.00898 * 111.00134 * 183.95339 * 13 11 9 42 42 H 1.08995 * 109.47790 * 294.99945 * 14 11 9 43 43 H 1.09001 * 109.47648 * 55.00468 * 14 11 9 44 44 H 1.09003 * 109.46899 * 300.00304 * 15 14 11 45 45 H 1.09001 * 109.46469 * 59.99747 * 15 14 11 46 46 H 0.97000 * 120.00058 * 179.97438 * 19 18 16 47 47 H 1.08008 * 120.00206 * 359.97438 * 25 24 2 48 48 H 1.07996 * 120.00138 * 180.22646 * 26 25 24 49 49 H 1.08005 * 120.00037 * 179.83421 * 27 26 25 50 50 H 1.07997 * 120.00367 * 179.97438 * 28 27 26 51 51 H 1.07997 * 120.00360 * 359.97438 * 29 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.2000 0.1830 -2.2941 6 6 2.7077 -0.6407 -3.4793 7 6 2.9157 0.2765 -4.6861 8 7 3.4025 -0.5121 -5.8207 9 6 3.6581 0.0896 -6.9993 10 8 3.4847 1.2838 -7.1207 11 6 4.1529 -0.7227 -8.1683 12 1 3.6290 -1.6781 -8.1946 13 7 3.8987 0.0098 -9.4160 14 6 5.6555 -0.9689 -8.0185 15 6 6.1342 -1.8967 -9.1371 16 6 7.6144 -2.1388 -8.9900 17 1 8.1590 -1.6774 -8.1794 18 6 8.2729 -2.9500 -9.8895 19 7 7.6095 -3.5121 -10.8761 20 14 10.1078 -3.2495 -9.7075 21 1 10.3781 -3.8805 -8.3907 22 1 10.5724 -4.1501 -10.7931 23 1 10.8316 -1.9558 -9.7944 24 6 2.0324 -0.7104 1.2304 25 6 2.1591 -2.0870 1.2304 26 6 2.6236 -2.7383 2.3577 27 6 2.9537 -2.0138 3.4878 28 6 2.8221 -0.6378 3.4896 29 6 2.3612 0.0139 2.3609 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 2.9319 0.9513 -2.0451 34 1 1.2537 0.6547 -2.5589 35 1 1.9756 -1.4088 -3.7282 36 1 3.6540 -1.1127 -3.2148 37 1 3.6481 1.0444 -4.4369 38 1 1.9698 0.7490 -4.9507 39 1 3.5415 -1.4671 -5.7234 40 1 4.3741 0.8998 -9.4162 41 1 4.1627 -0.5413 -10.2190 42 1 6.1874 -0.0196 -8.0813 43 1 5.8531 -1.4329 -7.0522 44 1 5.6023 -2.8460 -9.0743 45 1 5.9366 -1.4326 -10.1034 46 1 8.0729 -4.0826 -11.5092 47 1 1.8976 -2.6534 0.3487 48 1 2.7261 -3.8134 2.3565 49 1 3.3141 -2.5230 4.3695 50 1 3.0795 -0.0718 4.3726 51 1 2.2585 1.0890 2.3622 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424065027.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:14 Heat of formation + Delta-G solvation = -85.553747 kcal Electronic energy + Delta-G solvation = -27154.877249 eV Core-core repulsion = 23245.972631 eV Total energy + Delta-G solvation = -3908.904617 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.99338 -39.60849 -38.26297 -35.89472 -35.19048 -33.38467 -32.84435 -31.51608 -31.18254 -29.88009 -29.53708 -27.07080 -25.45798 -24.10521 -23.48910 -22.84343 -21.91631 -21.13422 -20.70023 -19.70464 -17.52545 -17.22353 -17.12342 -16.40115 -16.22196 -15.90471 -15.77158 -15.15229 -14.81869 -14.65241 -14.64239 -14.43682 -14.06705 -13.94001 -13.71045 -13.47297 -13.21881 -12.99308 -12.98497 -12.73492 -12.58435 -12.20399 -12.10137 -11.97493 -11.70225 -11.56237 -11.42378 -11.27861 -11.07499 -11.04792 -10.90733 -10.70681 -9.99571 -9.98475 -9.91455 -9.29627 -9.26278 -9.21416 -9.10300 -8.99259 -8.43670 -8.18198 -6.08317 -4.11518 0.95384 1.06494 2.94194 2.96163 3.28695 3.33490 3.35904 3.40626 3.52579 4.28441 4.39526 4.49401 4.60890 4.64574 4.68214 4.74996 4.78949 4.80455 4.91191 5.08309 5.12847 5.13666 5.19053 5.20339 5.23797 5.27827 5.34183 5.36765 5.48243 5.59201 5.61489 5.69260 5.74099 5.76902 5.84375 5.88623 6.09908 6.18298 6.19242 6.29058 6.49371 6.53303 6.63608 6.86591 6.87742 7.43668 7.51772 7.61532 7.70760 7.88487 7.91499 8.31212 8.46917 8.94164 9.53301 11.02482 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011840 B = 0.001725 C = 0.001549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2364.202029 B =16223.891849 C =18071.680720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.128 3.872 3 H 0.070 0.930 4 O -0.377 6.377 5 C 0.067 3.933 6 C -0.131 4.131 7 C 0.125 3.875 8 N -0.735 5.735 9 C 0.526 3.474 10 O -0.540 6.540 11 C 0.075 3.925 12 H 0.097 0.903 13 N -0.831 5.831 14 C -0.138 4.138 15 C 0.024 3.976 16 C -0.525 4.525 17 H 0.054 0.946 18 C 0.059 3.941 19 N -0.893 5.893 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C -0.087 4.087 25 C -0.091 4.091 26 C -0.123 4.123 27 C -0.120 4.120 28 C -0.122 4.122 29 C -0.113 4.113 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.403 0.597 40 H 0.345 0.655 41 H 0.354 0.646 42 H 0.054 0.946 43 H 0.056 0.944 44 H 0.019 0.981 45 H 0.018 0.982 46 H 0.262 0.738 47 H 0.128 0.872 48 H 0.123 0.877 49 H 0.121 0.879 50 H 0.122 0.878 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.898 5.050 27.125 31.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.070 3.930 3 H 0.088 0.912 4 O -0.296 6.296 5 C -0.010 4.010 6 C -0.168 4.168 7 C 0.000 4.000 8 N -0.388 5.388 9 C 0.312 3.688 10 O -0.415 6.415 11 C -0.040 4.040 12 H 0.115 0.885 13 N -0.363 5.363 14 C -0.177 4.177 15 C -0.013 4.013 16 C -0.563 4.563 17 H 0.072 0.928 18 C -0.143 4.143 19 N -0.532 5.532 20 Si 0.721 3.279 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.202 1.202 24 C -0.087 4.087 25 C -0.109 4.109 26 C -0.141 4.141 27 C -0.138 4.138 28 C -0.140 4.140 29 C -0.132 4.132 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.237 0.763 40 H 0.158 0.842 41 H 0.170 0.830 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.037 0.963 45 H 0.036 0.964 46 H 0.072 0.928 47 H 0.146 0.854 48 H 0.141 0.859 49 H 0.139 0.861 50 H 0.140 0.860 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -15.749 5.608 27.075 31.820 hybrid contribution 2.153 -0.551 0.052 2.223 sum -13.596 5.057 27.127 30.762 Atomic orbital electron populations 1.22268 0.94784 1.03250 1.02376 1.20831 0.93682 0.94979 0.83512 0.91250 1.87910 1.86621 1.35326 1.19746 1.22392 0.99747 0.92860 0.86018 1.21678 1.03209 0.99033 0.92931 1.21083 0.99916 0.93949 0.85004 1.45945 1.69109 1.12352 1.11420 1.20906 0.75892 0.88363 0.83590 1.90631 1.51808 1.15599 1.83494 1.21469 0.97236 0.96381 0.88950 0.88537 1.58743 1.66345 1.08172 1.03042 1.22383 0.91785 1.01400 1.02165 1.19106 0.96176 0.93712 0.92309 1.21145 0.93726 1.29213 1.12206 0.92775 1.25011 0.98362 0.95714 0.95223 1.69937 1.36085 1.31916 1.15234 0.86640 0.85390 0.78171 0.77707 1.20216 1.21217 1.20236 1.19746 1.00235 0.94318 0.94382 1.21036 0.97862 0.93917 0.98130 1.21223 0.99376 1.00119 0.93339 1.21200 0.99923 0.94316 0.98391 1.21096 1.00049 0.94720 0.98168 1.20953 0.99497 0.99708 0.92998 0.91497 0.91469 0.91899 0.92850 0.92869 0.90234 0.90144 0.91573 0.91539 0.76272 0.84155 0.83045 0.92695 0.92519 0.96301 0.96386 0.92827 0.85385 0.85933 0.86114 0.85990 0.86104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.08 9.51 37.16 0.35 -0.73 16 2 C 0.13 0.97 2.93 -27.88 -0.08 0.89 16 3 H 0.07 0.45 7.70 -51.93 -0.40 0.05 16 4 O -0.38 -3.43 9.14 -35.23 -0.32 -3.75 16 5 C 0.07 0.53 5.75 37.16 0.21 0.74 16 6 C -0.13 -1.11 5.70 -26.73 -0.15 -1.26 16 7 C 0.12 1.33 5.67 -4.04 -0.02 1.31 16 8 N -0.73 -9.30 5.56 -60.29 -0.33 -9.63 16 9 C 0.53 8.69 7.08 -10.98 -0.08 8.61 16 10 O -0.54 -10.58 16.25 5.55 0.09 -10.49 16 11 C 0.07 1.27 3.21 -68.87 -0.22 1.05 16 12 H 0.10 1.54 8.14 -51.93 -0.42 1.11 16 13 N -0.83 -14.43 8.94 -5.66 -0.05 -14.48 16 14 C -0.14 -2.70 4.78 -26.73 -0.13 -2.82 16 15 C 0.02 0.58 4.74 -27.88 -0.13 0.45 16 16 C -0.52 -14.41 9.11 -34.44 -0.31 -14.72 16 17 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -26.01 13.29 55.43 0.74 -25.27 16 20 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 C -0.09 -0.72 5.00 -104.63 -0.52 -1.24 16 25 C -0.09 -0.79 9.35 -39.58 -0.37 -1.16 16 26 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 27 C -0.12 -0.85 10.05 -39.58 -0.40 -1.24 16 28 C -0.12 -0.84 10.05 -39.58 -0.40 -1.24 16 29 C -0.11 -0.83 9.68 -39.59 -0.38 -1.21 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.37 7.87 -51.93 -0.41 -0.04 16 33 H 0.05 0.40 8.08 -51.93 -0.42 -0.02 16 34 H 0.05 0.37 7.87 -51.93 -0.41 -0.04 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.40 4.29 8.47 -40.82 -0.35 3.94 16 40 H 0.35 6.08 8.58 -39.29 -0.34 5.75 16 41 H 0.35 6.15 7.55 -39.29 -0.30 5.85 16 42 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.02 0.45 6.87 -51.93 -0.36 0.10 16 46 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 47 H 0.13 1.10 7.64 -52.48 -0.40 0.70 16 48 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 49 H 0.12 0.61 8.06 -52.48 -0.42 0.18 16 50 H 0.12 0.59 8.06 -52.49 -0.42 0.16 16 51 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 LS Contribution 422.47 15.07 6.37 6.37 Total: -1.00 -32.62 422.47 -10.50 -43.12 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: -8.83 Total: 10.21 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: -3.13 Total: -12.36 kcal Atomic # 7 Polarization: -49.74 SS G_CDS: 0.35 Total: -49.39 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: -0.23 Total: -14.24 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -32.62 -10.50 -43.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424065027.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.434 kcal (2) G-P(sol) polarization free energy of solvation -32.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds