Wall clock time and date at job start Tue Mar 31 2020 19:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47024 * 2 1 4 4 O 1.42903 * 109.46884 * 240.00367 * 2 1 3 5 5 C 1.42900 * 114.00107 * 89.99881 * 4 2 1 6 6 C 1.53000 * 109.46989 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47273 * 180.02562 * 6 5 4 8 8 N 1.46499 * 109.47555 * 179.97438 * 7 6 5 9 9 C 1.34777 * 120.00199 * 180.02562 * 8 7 6 10 10 O 1.21283 * 119.99750 * 359.97438 * 9 8 7 11 11 C 1.50702 * 119.99928 * 180.27479 * 9 8 7 12 12 H 1.08995 * 109.47357 * 39.71838 * 11 9 8 13 13 N 1.46895 * 109.46992 * 159.72213 * 11 9 8 14 14 C 1.52995 * 109.46732 * 279.72068 * 11 9 8 15 15 C 1.53009 * 109.47136 * 174.99999 * 14 11 9 16 16 C 1.50698 * 109.47293 * 179.97438 * 15 14 11 17 17 H 1.08004 * 119.99938 * 0.02562 * 16 15 14 18 18 C 1.37874 * 119.99700 * 179.97438 * 16 15 14 19 19 N 1.31512 * 120.00235 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99716 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47082 * 60.00547 * 20 18 16 22 22 H 1.48505 * 109.47032 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47219 * 300.00379 * 20 18 16 24 24 C 1.50702 * 109.47407 * 120.00163 * 2 1 3 25 25 C 1.38235 * 119.99809 * 84.72502 * 24 2 1 26 26 C 1.38233 * 119.99840 * 179.80953 * 25 24 2 27 27 C 1.38234 * 119.99958 * 0.40113 * 26 25 24 28 28 C 1.38234 * 120.00064 * 359.85256 * 27 26 25 29 29 C 1.38226 * 119.99953 * 264.99798 * 24 2 1 30 30 H 1.09004 * 109.46785 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46889 * 299.99656 * 1 2 3 32 32 H 1.08995 * 109.47241 * 60.00089 * 1 2 3 33 33 H 1.08992 * 109.47160 * 60.00256 * 5 4 2 34 34 H 1.08997 * 109.47199 * 299.99793 * 5 4 2 35 35 H 1.08998 * 109.47307 * 59.99602 * 6 5 4 36 36 H 1.09005 * 109.46653 * 299.99537 * 6 5 4 37 37 H 1.08998 * 109.47382 * 59.99521 * 7 6 5 38 38 H 1.09002 * 109.47216 * 299.99958 * 7 6 5 39 39 H 0.97000 * 119.99484 * 359.97438 * 8 7 6 40 40 H 1.00901 * 111.00088 * 60.00223 * 13 11 9 41 41 H 1.00898 * 111.00134 * 183.95339 * 13 11 9 42 42 H 1.08995 * 109.47790 * 294.99945 * 14 11 9 43 43 H 1.09001 * 109.47648 * 55.00468 * 14 11 9 44 44 H 1.09003 * 109.46899 * 300.00304 * 15 14 11 45 45 H 1.09001 * 109.46469 * 59.99747 * 15 14 11 46 46 H 0.97000 * 120.00058 * 179.97438 * 19 18 16 47 47 H 1.08008 * 120.00206 * 359.97438 * 25 24 2 48 48 H 1.07996 * 120.00138 * 180.22646 * 26 25 24 49 49 H 1.08005 * 120.00037 * 179.83421 * 27 26 25 50 50 H 1.07997 * 120.00367 * 179.97438 * 28 27 26 51 51 H 1.07997 * 120.00360 * 359.97438 * 29 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.2000 0.1830 -2.2941 6 6 2.7077 -0.6407 -3.4793 7 6 2.9157 0.2765 -4.6861 8 7 3.4025 -0.5121 -5.8207 9 6 3.6581 0.0896 -6.9993 10 8 3.4847 1.2838 -7.1207 11 6 4.1529 -0.7227 -8.1683 12 1 3.6290 -1.6781 -8.1946 13 7 3.8987 0.0098 -9.4160 14 6 5.6555 -0.9689 -8.0185 15 6 6.1342 -1.8967 -9.1371 16 6 7.6144 -2.1388 -8.9900 17 1 8.1590 -1.6774 -8.1794 18 6 8.2729 -2.9500 -9.8895 19 7 7.6095 -3.5121 -10.8761 20 14 10.1078 -3.2495 -9.7075 21 1 10.3781 -3.8805 -8.3907 22 1 10.5724 -4.1501 -10.7931 23 1 10.8316 -1.9558 -9.7944 24 6 2.0324 -0.7104 1.2304 25 6 2.1591 -2.0870 1.2304 26 6 2.6236 -2.7383 2.3577 27 6 2.9537 -2.0138 3.4878 28 6 2.8221 -0.6378 3.4896 29 6 2.3612 0.0139 2.3609 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 2.9319 0.9513 -2.0451 34 1 1.2537 0.6547 -2.5589 35 1 1.9756 -1.4088 -3.7282 36 1 3.6540 -1.1127 -3.2148 37 1 3.6481 1.0444 -4.4369 38 1 1.9698 0.7490 -4.9507 39 1 3.5415 -1.4671 -5.7234 40 1 4.3741 0.8998 -9.4162 41 1 4.1627 -0.5413 -10.2190 42 1 6.1874 -0.0196 -8.0813 43 1 5.8531 -1.4329 -7.0522 44 1 5.6023 -2.8460 -9.0743 45 1 5.9366 -1.4326 -10.1034 46 1 8.0729 -4.0826 -11.5092 47 1 1.8976 -2.6534 0.3487 48 1 2.7261 -3.8134 2.3565 49 1 3.3141 -2.5230 4.3695 50 1 3.0795 -0.0718 4.3726 51 1 2.2585 1.0890 2.3622 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424065027.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:13 Heat of formation + Delta-G solvation = -106.354834 kcal Electronic energy + Delta-G solvation = -27155.779251 eV Core-core repulsion = 23245.972631 eV Total energy + Delta-G solvation = -3909.806620 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.93183 -40.51358 -38.88080 -37.23072 -36.44480 -34.83139 -34.06699 -32.31716 -31.74053 -31.67600 -30.06279 -28.46331 -26.76748 -25.17793 -24.47152 -23.44772 -22.69042 -22.35581 -21.69756 -21.03007 -18.86756 -18.11299 -17.99376 -17.75715 -17.16072 -16.86351 -16.53227 -16.40488 -16.11041 -15.89823 -15.55660 -15.34527 -15.20707 -15.03514 -14.58037 -14.55911 -14.22283 -14.03096 -13.95817 -13.72215 -13.53827 -13.38458 -13.10544 -12.93397 -12.84820 -12.67653 -12.65065 -12.53764 -12.15596 -12.08739 -11.88025 -11.79549 -11.70605 -11.59205 -11.31445 -10.75319 -10.59388 -10.55354 -10.11327 -9.81019 -9.65189 -9.63625 -8.21053 -6.31421 0.40994 0.51421 1.40002 1.41467 1.49426 1.61512 2.03624 2.40084 2.67161 2.91579 3.12431 3.73032 3.75835 3.78270 3.94859 3.96422 4.07117 4.14137 4.14935 4.17723 4.24368 4.26731 4.30814 4.33096 4.49927 4.50743 4.62242 4.63967 4.67611 4.69200 4.80864 4.85316 4.87401 5.08859 5.09576 5.10523 5.12677 5.17828 5.25386 5.43698 5.46961 5.57383 5.62954 5.64331 5.66338 5.81044 6.07911 6.11334 6.21640 6.28400 6.48159 6.53317 6.83847 7.23117 7.37521 8.89348 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011840 B = 0.001725 C = 0.001549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2364.202029 B =16223.891849 C =18071.680720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.125 3.875 3 H 0.080 0.920 4 O -0.393 6.393 5 C 0.066 3.934 6 C -0.119 4.119 7 C 0.126 3.874 8 N -0.720 5.720 9 C 0.526 3.474 10 O -0.573 6.573 11 C 0.080 3.920 12 H 0.110 0.890 13 N -0.831 5.831 14 C -0.121 4.121 15 C 0.029 3.971 16 C -0.546 4.546 17 H 0.055 0.945 18 C 0.005 3.995 19 N -0.926 5.926 20 Si 0.959 3.041 21 H -0.268 1.268 22 H -0.283 1.283 23 H -0.271 1.271 24 C -0.100 4.100 25 C -0.111 4.111 26 C -0.134 4.134 27 C -0.128 4.128 28 C -0.128 4.128 29 C -0.122 4.122 30 H 0.056 0.944 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.414 0.586 40 H 0.344 0.656 41 H 0.353 0.647 42 H 0.044 0.956 43 H 0.066 0.934 44 H 0.003 0.997 45 H 0.003 0.997 46 H 0.264 0.736 47 H 0.120 0.880 48 H 0.134 0.866 49 H 0.140 0.860 50 H 0.143 0.857 51 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.701 5.326 28.993 32.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.068 3.932 3 H 0.098 0.902 4 O -0.313 6.313 5 C -0.011 4.011 6 C -0.157 4.157 7 C 0.002 3.998 8 N -0.373 5.373 9 C 0.313 3.687 10 O -0.451 6.451 11 C -0.035 4.035 12 H 0.128 0.872 13 N -0.362 5.362 14 C -0.161 4.161 15 C -0.008 4.008 16 C -0.584 4.584 17 H 0.073 0.927 18 C -0.193 4.193 19 N -0.565 5.565 20 Si 0.784 3.216 21 H -0.192 1.192 22 H -0.208 1.208 23 H -0.197 1.197 24 C -0.100 4.100 25 C -0.129 4.129 26 C -0.152 4.152 27 C -0.146 4.146 28 C -0.146 4.146 29 C -0.140 4.140 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.251 0.749 40 H 0.156 0.844 41 H 0.168 0.832 42 H 0.062 0.938 43 H 0.085 0.915 44 H 0.021 0.979 45 H 0.021 0.979 46 H 0.073 0.927 47 H 0.138 0.862 48 H 0.151 0.849 49 H 0.158 0.842 50 H 0.161 0.839 51 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -15.563 5.861 28.982 33.414 hybrid contribution 2.062 -0.650 -0.482 2.215 sum -13.502 5.211 28.499 31.963 Atomic orbital electron populations 1.22233 0.94052 1.02826 1.03137 1.20952 0.94260 0.95251 0.82786 0.90172 1.87883 1.86884 1.36159 1.20381 1.22409 1.00465 0.92656 0.85558 1.21541 1.03273 0.98643 0.92210 1.21170 0.99616 0.94078 0.84909 1.45861 1.67515 1.13104 1.10777 1.20708 0.75965 0.87736 0.84295 1.90620 1.53602 1.16804 1.84118 1.21416 0.95521 0.97214 0.89338 0.87172 1.58762 1.66126 1.08094 1.03201 1.22134 0.93521 0.99651 1.00778 1.18980 0.94792 0.93764 0.93282 1.21598 0.95456 1.29154 1.12208 0.92721 1.25866 1.03020 0.95538 0.94926 1.70052 1.37888 1.32594 1.16014 0.85599 0.79838 0.78203 0.77998 1.19246 1.20826 1.19657 1.19933 1.00621 0.94347 0.95101 1.21112 0.99004 0.94413 0.98378 1.21446 0.99392 1.00927 0.93427 1.21501 0.99623 0.94704 0.98801 1.21434 0.99377 0.94939 0.98809 1.21226 0.99218 1.00709 0.92808 0.92494 0.90456 0.91346 0.92396 0.91756 0.89707 0.90421 0.92090 0.91460 0.74921 0.84353 0.83248 0.93760 0.91501 0.97877 0.97908 0.92745 0.86211 0.84852 0.84239 0.83894 0.84355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.94 9.51 71.98 0.68 -1.25 16 2 C 0.12 1.76 2.93 29.85 0.09 1.85 16 3 H 0.08 0.93 7.70 -2.39 -0.02 0.91 16 4 O -0.39 -6.81 9.14 -148.98 -1.36 -8.17 16 5 C 0.07 0.95 5.75 71.98 0.41 1.36 16 6 C -0.12 -1.83 5.70 30.59 0.17 -1.65 16 7 C 0.13 2.51 5.67 86.38 0.49 3.00 16 8 N -0.72 -17.10 5.56 -463.06 -2.57 -19.68 16 9 C 0.53 16.85 7.08 87.66 0.62 17.47 16 10 O -0.57 -22.08 16.25 -3.04 -0.05 -22.13 16 11 C 0.08 2.67 3.21 44.17 0.14 2.81 16 12 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 13 N -0.83 -28.70 8.94 -171.82 -1.54 -30.23 16 14 C -0.12 -4.69 4.78 30.60 0.15 -4.54 16 15 C 0.03 1.42 4.74 29.85 0.14 1.56 16 16 C -0.55 -29.99 9.11 25.60 0.23 -29.76 16 17 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 18 C 0.01 0.28 5.46 84.65 0.46 0.75 16 19 N -0.93 -54.26 13.29 21.45 0.28 -53.98 16 20 Si 0.96 43.40 29.54 68.60 2.03 45.43 16 21 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 22 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 23 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 24 C -0.10 -1.58 5.00 -19.87 -0.10 -1.68 16 25 C -0.11 -1.91 9.35 22.27 0.21 -1.70 16 26 C -0.13 -1.99 10.05 22.27 0.22 -1.77 16 27 C -0.13 -1.64 10.05 22.27 0.22 -1.42 16 28 C -0.13 -1.55 10.05 22.27 0.22 -1.32 16 29 C -0.12 -1.61 9.68 22.27 0.22 -1.39 16 30 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 31 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.07 0.71 7.87 -2.39 -0.02 0.69 16 33 H 0.06 0.77 8.08 -2.39 -0.02 0.76 16 34 H 0.06 0.78 7.87 -2.39 -0.02 0.76 16 35 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 37 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.41 8.03 8.47 -92.71 -0.79 7.24 16 40 H 0.34 12.13 8.58 -89.69 -0.77 11.36 16 41 H 0.35 12.33 7.55 -89.70 -0.68 11.65 16 42 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 44 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 45 H 0.00 0.14 6.87 -2.39 -0.02 0.12 16 46 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 47 H 0.12 2.14 7.64 -2.91 -0.02 2.12 16 48 H 0.13 1.54 8.06 -2.91 -0.02 1.52 16 49 H 0.14 1.16 8.06 -2.91 -0.02 1.13 16 50 H 0.14 1.04 8.06 -2.91 -0.02 1.02 16 51 H 0.14 1.23 8.06 -2.91 -0.02 1.20 16 Total: -1.00 -69.06 422.47 0.08 -68.99 By element: Atomic # 1 Polarization: 38.77 SS G_CDS: -1.31 Total: 37.47 kcal Atomic # 6 Polarization: -22.29 SS G_CDS: 4.59 Total: -17.70 kcal Atomic # 7 Polarization: -100.06 SS G_CDS: -3.82 Total: -103.89 kcal Atomic # 8 Polarization: -28.89 SS G_CDS: -1.41 Total: -30.30 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -69.06 0.08 -68.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424065027.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.367 kcal (2) G-P(sol) polarization free energy of solvation -69.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds