Wall clock time and date at job start Tue Mar 31 2020 19:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 113.99834 * 2 1 4 4 C 1.53004 * 109.47150 * 184.26143 * 3 2 1 5 5 N 1.46501 * 109.46845 * 66.02850 * 4 3 2 6 6 C 1.34774 * 120.00014 * 90.47932 * 5 4 3 7 7 O 1.21284 * 120.00306 * 181.13756 * 6 5 4 8 8 C 1.50702 * 120.00173 * 1.13175 * 6 5 4 9 9 H 1.09002 * 109.46867 * 320.00619 * 8 6 5 10 10 N 1.46900 * 109.47452 * 200.00472 * 8 6 5 11 11 C 1.52998 * 109.46954 * 80.00217 * 8 6 5 12 12 C 1.53005 * 109.47055 * 185.00578 * 11 8 6 13 13 C 1.50699 * 109.47000 * 179.97438 * 12 11 8 14 14 H 1.07997 * 120.00085 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99937 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99764 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99965 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47021 * 90.00280 * 17 15 13 19 19 H 1.48499 * 109.47002 * 209.99776 * 17 15 13 20 20 H 1.48497 * 109.47263 * 329.99853 * 17 15 13 21 21 C 1.46503 * 120.00139 * 270.47546 * 5 4 3 22 22 H 1.08994 * 109.46993 * 17.67145 * 21 5 4 23 23 C 1.53002 * 109.47000 * 137.67427 * 21 5 4 24 24 C 1.50696 * 109.47238 * 257.67160 * 21 5 4 25 25 C 1.38238 * 120.00011 * 328.79557 * 24 21 5 26 26 C 1.38235 * 119.99814 * 179.80923 * 25 24 21 27 27 C 1.38234 * 120.00106 * 0.39375 * 26 25 24 28 28 C 1.38228 * 120.00063 * 359.85764 * 27 26 25 29 29 C 1.38235 * 120.00136 * 359.95617 * 28 27 26 30 30 H 1.09001 * 109.46863 * 184.36072 * 1 2 3 31 31 H 1.08995 * 109.47420 * 304.36446 * 1 2 3 32 32 H 1.09003 * 109.47090 * 64.36852 * 1 2 3 33 33 H 1.08996 * 109.47342 * 64.26936 * 3 2 1 34 34 H 1.08997 * 109.47179 * 304.26074 * 3 2 1 35 35 H 1.08996 * 109.47007 * 306.03276 * 4 3 2 36 36 H 1.08998 * 109.47398 * 186.02744 * 4 3 2 37 37 H 1.00898 * 111.00144 * 176.04598 * 10 8 6 38 38 H 1.00903 * 110.99759 * 299.99644 * 10 8 6 39 39 H 1.08994 * 109.47492 * 65.00160 * 11 8 6 40 40 H 1.09005 * 109.46897 * 305.00179 * 11 8 6 41 41 H 1.08994 * 109.47312 * 59.99472 * 12 11 8 42 42 H 1.08998 * 109.46623 * 299.99386 * 12 11 8 43 43 H 0.97006 * 119.99900 * 180.02562 * 16 15 13 44 44 H 1.09000 * 109.47113 * 328.58307 * 23 21 5 45 45 H 1.08993 * 109.47072 * 88.58769 * 23 21 5 46 46 H 1.09008 * 109.46657 * 208.59088 * 23 21 5 47 47 H 1.07995 * 120.00302 * 359.97438 * 25 24 21 48 48 H 1.08001 * 119.99896 * 180.22498 * 26 25 24 49 49 H 1.08006 * 119.99716 * 179.83145 * 27 26 25 50 50 H 1.07999 * 120.00177 * 179.97438 * 28 27 26 51 51 H 1.07997 * 120.00252 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5318 1.1863 -0.1072 5 7 3.8869 0.6272 -1.4139 6 6 4.1126 1.4476 -2.4591 7 8 4.3864 0.9841 -3.5459 8 6 4.0247 2.9411 -2.2775 9 1 3.1827 3.1791 -1.6275 10 7 3.8311 3.5828 -3.5846 11 6 5.3191 3.4548 -1.6439 12 6 5.1825 4.9491 -1.3448 13 6 6.4572 5.4550 -0.7201 14 1 7.2821 4.7784 -0.5527 15 6 6.5703 6.7817 -0.3623 16 7 7.6829 7.2233 0.1824 17 14 5.1432 7.9519 -0.6512 18 1 4.2617 7.9621 0.5438 19 1 5.6665 9.3207 -0.8919 20 1 4.3671 7.5034 -1.8351 21 6 3.9968 -0.8237 -1.5846 22 1 3.4902 -1.3258 -0.7604 23 6 3.3465 -1.2322 -2.9078 24 6 5.4509 -1.2194 -1.5962 25 6 6.4007 -0.3468 -2.0935 26 6 7.7350 -0.7083 -2.1006 27 6 8.1184 -1.9455 -1.6178 28 6 7.1680 -2.8201 -1.1253 29 6 5.8342 -2.4572 -1.1147 30 1 -0.3633 -1.0247 0.0781 31 1 -0.3634 0.5800 0.8482 32 1 -0.3633 0.4446 -0.9266 33 1 1.7504 1.8189 0.9257 34 1 1.6294 1.8727 -0.8493 35 1 3.9013 0.5305 0.6811 36 1 3.9820 2.1731 0.0003 37 1 3.7047 4.5787 -3.4834 38 1 4.5992 3.3772 -4.2057 39 1 6.1487 3.2965 -2.3328 40 1 5.5089 2.9146 -0.7163 41 1 4.3529 5.1074 -0.6559 42 1 4.9927 5.4893 -2.2723 43 1 7.7624 8.1566 0.4345 44 1 2.5215 -0.5558 -3.1314 45 1 4.0857 -1.1804 -3.7072 46 1 2.9689 -2.2517 -2.8275 47 1 6.1008 0.6183 -2.4741 48 1 8.4775 -0.0251 -2.4858 49 1 9.1606 -2.2290 -1.6258 50 1 7.4676 -3.7869 -0.7485 51 1 5.0917 -3.1403 -0.7295 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424095443.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:39:53 Heat of formation + Delta-G solvation = -51.532435 kcal Electronic energy + Delta-G solvation = -30614.955646 eV Core-core repulsion = 26707.526303 eV Total energy + Delta-G solvation = -3907.429343 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.75926 -38.76596 -37.99600 -36.05519 -35.51357 -33.06589 -32.60881 -30.78499 -30.35803 -29.64952 -28.94671 -26.88529 -26.38807 -24.54106 -23.31829 -22.94616 -22.28989 -21.09013 -20.21685 -18.84814 -17.59029 -16.93579 -16.82059 -16.50388 -16.09491 -15.79479 -15.34416 -15.15729 -14.84646 -14.52749 -14.36570 -14.25475 -14.01249 -13.55233 -13.35593 -13.28791 -13.14049 -12.88734 -12.72446 -12.55896 -12.27691 -12.12353 -12.03428 -11.96109 -11.72810 -11.65600 -11.40574 -11.19946 -11.00749 -10.81621 -10.78880 -10.29767 -10.09279 -9.91793 -9.85056 -9.34559 -9.21288 -8.82044 -8.66578 -8.65008 -8.56231 -8.33069 -6.14313 -4.14083 1.42836 1.52884 2.82278 2.99877 3.21644 3.30731 3.31300 3.60445 3.91076 4.34593 4.52918 4.77439 4.90103 4.95376 5.00524 5.03204 5.08430 5.09912 5.18383 5.18806 5.21558 5.27461 5.32739 5.35866 5.40051 5.45308 5.48642 5.54396 5.60061 5.70656 5.72673 5.80241 5.98756 6.08439 6.13469 6.14077 6.26065 6.38719 6.52093 6.55243 6.60279 6.66120 6.85884 6.93362 7.04884 7.10926 7.16224 7.29224 7.55231 7.63435 7.74753 8.38982 8.41869 8.89898 9.46793 10.98865 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.009756 B = 0.004068 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2869.275311 B = 6881.774775 C = 8471.462599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.386 6.386 3 C 0.040 3.960 4 C 0.103 3.897 5 N -0.603 5.603 6 C 0.526 3.474 7 O -0.523 6.523 8 C 0.068 3.932 9 H 0.094 0.906 10 N -0.830 5.830 11 C -0.133 4.133 12 C -0.010 4.010 13 C -0.524 4.524 14 H 0.072 0.928 15 C 0.068 3.932 16 N -0.900 5.900 17 Si 0.880 3.120 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.265 1.265 21 C 0.193 3.807 22 H 0.098 0.902 23 C -0.138 4.138 24 C -0.095 4.095 25 C -0.097 4.097 26 C -0.120 4.120 27 C -0.124 4.124 28 C -0.126 4.126 29 C -0.116 4.116 30 H 0.083 0.917 31 H 0.040 0.960 32 H 0.039 0.961 33 H 0.062 0.938 34 H 0.055 0.945 35 H 0.089 0.911 36 H 0.108 0.892 37 H 0.350 0.650 38 H 0.348 0.652 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.013 0.987 42 H 0.016 0.984 43 H 0.264 0.736 44 H 0.060 0.940 45 H 0.073 0.927 46 H 0.051 0.949 47 H 0.130 0.870 48 H 0.120 0.880 49 H 0.117 0.883 50 H 0.118 0.882 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.737 -17.928 -0.494 20.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.305 6.305 3 C -0.037 4.037 4 C -0.021 4.021 5 N -0.337 5.337 6 C 0.315 3.685 7 O -0.399 6.399 8 C -0.048 4.048 9 H 0.111 0.889 10 N -0.362 5.362 11 C -0.172 4.172 12 C -0.047 4.047 13 C -0.561 4.561 14 H 0.090 0.910 15 C -0.133 4.133 16 N -0.538 5.538 17 Si 0.707 3.293 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.190 1.190 21 C 0.090 3.910 22 H 0.116 0.884 23 C -0.196 4.196 24 C -0.096 4.096 25 C -0.115 4.115 26 C -0.138 4.138 27 C -0.142 4.142 28 C -0.144 4.144 29 C -0.135 4.135 30 H 0.101 0.899 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.108 0.892 36 H 0.126 0.874 37 H 0.164 0.836 38 H 0.162 0.838 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.031 0.969 42 H 0.034 0.966 43 H 0.074 0.926 44 H 0.079 0.921 45 H 0.092 0.908 46 H 0.070 0.930 47 H 0.148 0.852 48 H 0.138 0.862 49 H 0.135 0.865 50 H 0.136 0.864 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -11.058 -18.624 -1.083 21.687 hybrid contribution 0.067 1.577 0.394 1.627 sum -10.991 -17.047 -0.689 20.294 Atomic orbital electron populations 1.22707 0.81280 1.02457 0.99952 1.87870 1.19485 1.27717 1.95426 1.23139 0.94474 0.85183 1.00935 1.21874 0.92841 1.01831 0.85536 1.48006 1.69748 1.05830 1.10087 1.20706 0.75290 0.88913 0.83594 1.90660 1.46853 1.77185 1.25168 1.21613 1.00002 0.90218 0.92919 0.88859 1.58746 1.50684 1.16301 1.10426 1.22273 0.94888 0.99604 1.00455 1.19567 0.97965 0.90757 0.96406 1.21047 0.99510 0.95243 1.40343 0.91031 1.25031 0.95646 0.98195 0.94459 1.69912 1.26036 1.15811 1.42046 0.86788 0.82920 0.80446 0.79153 1.20268 1.21327 1.19000 1.19897 0.91299 0.80087 0.99733 0.88406 1.22011 1.01142 0.99957 0.96486 1.20292 0.95714 0.94659 0.98907 1.21403 0.92537 1.00367 0.97213 1.21223 0.96303 0.96579 0.99698 1.21128 0.99270 0.94409 0.99414 1.21026 0.93143 0.99494 1.00746 1.20897 0.96072 0.95993 1.00532 0.89869 0.94161 0.94187 0.91988 0.92706 0.89243 0.87361 0.83557 0.83834 0.91930 0.91740 0.96900 0.96572 0.92617 0.92088 0.90836 0.93042 0.85245 0.86207 0.86460 0.86418 0.86356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.39 -4.12 9.80 -35.23 -0.35 -4.47 16 3 C 0.04 0.42 6.09 37.16 0.23 0.64 16 4 C 0.10 1.17 5.31 -4.04 -0.02 1.15 16 5 N -0.60 -7.95 2.12 -167.43 -0.36 -8.30 16 6 C 0.53 8.11 4.58 -10.99 -0.05 8.06 16 7 O -0.52 -9.21 11.91 5.55 0.07 -9.15 16 8 C 0.07 1.05 2.36 -68.86 -0.16 0.88 16 9 H 0.09 1.34 6.29 -51.93 -0.33 1.01 16 10 N -0.83 -12.95 8.94 -5.65 -0.05 -13.00 16 11 C -0.13 -2.39 4.45 -26.73 -0.12 -2.51 16 12 C -0.01 -0.21 3.81 -27.88 -0.11 -0.31 16 13 C -0.52 -14.13 9.66 -34.44 -0.33 -14.47 16 14 H 0.07 2.11 7.99 -52.49 -0.42 1.70 16 15 C 0.07 1.91 5.47 -17.82 -0.10 1.82 16 16 N -0.90 -26.94 13.96 55.43 0.77 -26.17 16 17 Si 0.88 20.66 27.47 -169.99 -4.67 15.99 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 20 H -0.27 -5.88 6.54 56.52 0.37 -5.51 16 21 C 0.19 2.44 2.64 -69.08 -0.18 2.26 16 22 H 0.10 1.13 7.33 -51.93 -0.38 0.75 16 23 C -0.14 -1.80 8.10 37.16 0.30 -1.50 16 24 C -0.09 -1.28 4.84 -104.62 -0.51 -1.78 16 25 C -0.10 -1.48 8.78 -39.58 -0.35 -1.83 16 26 C -0.12 -1.69 10.05 -39.58 -0.40 -2.09 16 27 C -0.12 -1.51 10.05 -39.59 -0.40 -1.91 16 28 C -0.13 -1.43 10.05 -39.59 -0.40 -1.83 16 29 C -0.12 -1.37 9.70 -39.58 -0.38 -1.76 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.05 0.60 7.43 -51.93 -0.39 0.21 16 35 H 0.09 0.94 8.08 -51.93 -0.42 0.52 16 36 H 0.11 1.30 4.86 -51.93 -0.25 1.05 16 37 H 0.35 5.32 7.55 -39.29 -0.30 5.03 16 38 H 0.35 5.56 8.58 -39.29 -0.34 5.22 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.06 1.14 6.53 -51.93 -0.34 0.81 16 41 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 42 H 0.02 0.35 5.93 -51.93 -0.31 0.04 16 43 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 44 H 0.06 0.87 7.60 -51.93 -0.39 0.47 16 45 H 0.07 1.11 6.75 -51.93 -0.35 0.76 16 46 H 0.05 0.56 8.14 -51.92 -0.42 0.14 16 47 H 0.13 2.20 4.46 -52.49 -0.23 1.96 16 48 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 49 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 50 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 51 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 398.21 15.07 6.00 6.00 Total: -1.00 -31.45 398.21 -8.67 -40.12 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: -8.23 Total: 12.77 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: -1.86 Total: -13.80 kcal Atomic # 7 Polarization: -47.84 SS G_CDS: 0.37 Total: -47.47 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: -0.28 Total: -13.61 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.67 Total: 15.99 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.45 -8.67 -40.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424095443.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.411 kcal (2) G-P(sol) polarization free energy of solvation -31.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds