Wall clock time and date at job start Tue Mar 31 2020 19:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 113.99834 * 2 1 4 4 C 1.53004 * 109.47150 * 184.26143 * 3 2 1 5 5 N 1.46501 * 109.46845 * 66.02850 * 4 3 2 6 6 C 1.34774 * 120.00014 * 90.47932 * 5 4 3 7 7 O 1.21284 * 120.00306 * 181.13756 * 6 5 4 8 8 C 1.50702 * 120.00173 * 1.13175 * 6 5 4 9 9 H 1.09002 * 109.46867 * 320.00619 * 8 6 5 10 10 N 1.46900 * 109.47452 * 200.00472 * 8 6 5 11 11 C 1.52998 * 109.46954 * 80.00217 * 8 6 5 12 12 C 1.53005 * 109.47055 * 185.00578 * 11 8 6 13 13 C 1.50699 * 109.47000 * 179.97438 * 12 11 8 14 14 H 1.07997 * 120.00085 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99937 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99764 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99965 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47021 * 90.00280 * 17 15 13 19 19 H 1.48499 * 109.47002 * 209.99776 * 17 15 13 20 20 H 1.48497 * 109.47263 * 329.99853 * 17 15 13 21 21 C 1.46503 * 120.00139 * 270.47546 * 5 4 3 22 22 H 1.08994 * 109.46993 * 17.67145 * 21 5 4 23 23 C 1.53002 * 109.47000 * 137.67427 * 21 5 4 24 24 C 1.50696 * 109.47238 * 257.67160 * 21 5 4 25 25 C 1.38238 * 120.00011 * 328.79557 * 24 21 5 26 26 C 1.38235 * 119.99814 * 179.80923 * 25 24 21 27 27 C 1.38234 * 120.00106 * 0.39375 * 26 25 24 28 28 C 1.38228 * 120.00063 * 359.85764 * 27 26 25 29 29 C 1.38235 * 120.00136 * 359.95617 * 28 27 26 30 30 H 1.09001 * 109.46863 * 184.36072 * 1 2 3 31 31 H 1.08995 * 109.47420 * 304.36446 * 1 2 3 32 32 H 1.09003 * 109.47090 * 64.36852 * 1 2 3 33 33 H 1.08996 * 109.47342 * 64.26936 * 3 2 1 34 34 H 1.08997 * 109.47179 * 304.26074 * 3 2 1 35 35 H 1.08996 * 109.47007 * 306.03276 * 4 3 2 36 36 H 1.08998 * 109.47398 * 186.02744 * 4 3 2 37 37 H 1.00898 * 111.00144 * 176.04598 * 10 8 6 38 38 H 1.00903 * 110.99759 * 299.99644 * 10 8 6 39 39 H 1.08994 * 109.47492 * 65.00160 * 11 8 6 40 40 H 1.09005 * 109.46897 * 305.00179 * 11 8 6 41 41 H 1.08994 * 109.47312 * 59.99472 * 12 11 8 42 42 H 1.08998 * 109.46623 * 299.99386 * 12 11 8 43 43 H 0.97006 * 119.99900 * 180.02562 * 16 15 13 44 44 H 1.09000 * 109.47113 * 328.58307 * 23 21 5 45 45 H 1.08993 * 109.47072 * 88.58769 * 23 21 5 46 46 H 1.09008 * 109.46657 * 208.59088 * 23 21 5 47 47 H 1.07995 * 120.00302 * 359.97438 * 25 24 21 48 48 H 1.08001 * 119.99896 * 180.22498 * 26 25 24 49 49 H 1.08006 * 119.99716 * 179.83145 * 27 26 25 50 50 H 1.07999 * 120.00177 * 179.97438 * 28 27 26 51 51 H 1.07997 * 120.00252 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5318 1.1863 -0.1072 5 7 3.8869 0.6272 -1.4139 6 6 4.1126 1.4476 -2.4591 7 8 4.3864 0.9841 -3.5459 8 6 4.0247 2.9411 -2.2775 9 1 3.1827 3.1791 -1.6275 10 7 3.8311 3.5828 -3.5846 11 6 5.3191 3.4548 -1.6439 12 6 5.1825 4.9491 -1.3448 13 6 6.4572 5.4550 -0.7201 14 1 7.2821 4.7784 -0.5527 15 6 6.5703 6.7817 -0.3623 16 7 7.6829 7.2233 0.1824 17 14 5.1432 7.9519 -0.6512 18 1 4.2617 7.9621 0.5438 19 1 5.6665 9.3207 -0.8919 20 1 4.3671 7.5034 -1.8351 21 6 3.9968 -0.8237 -1.5846 22 1 3.4902 -1.3258 -0.7604 23 6 3.3465 -1.2322 -2.9078 24 6 5.4509 -1.2194 -1.5962 25 6 6.4007 -0.3468 -2.0935 26 6 7.7350 -0.7083 -2.1006 27 6 8.1184 -1.9455 -1.6178 28 6 7.1680 -2.8201 -1.1253 29 6 5.8342 -2.4572 -1.1147 30 1 -0.3633 -1.0247 0.0781 31 1 -0.3634 0.5800 0.8482 32 1 -0.3633 0.4446 -0.9266 33 1 1.7504 1.8189 0.9257 34 1 1.6294 1.8727 -0.8493 35 1 3.9013 0.5305 0.6811 36 1 3.9820 2.1731 0.0003 37 1 3.7047 4.5787 -3.4834 38 1 4.5992 3.3772 -4.2057 39 1 6.1487 3.2965 -2.3328 40 1 5.5089 2.9146 -0.7163 41 1 4.3529 5.1074 -0.6559 42 1 4.9927 5.4893 -2.2723 43 1 7.7624 8.1566 0.4345 44 1 2.5215 -0.5558 -3.1314 45 1 4.0857 -1.1804 -3.7072 46 1 2.9689 -2.2517 -2.8275 47 1 6.1008 0.6183 -2.4741 48 1 8.4775 -0.0251 -2.4858 49 1 9.1606 -2.2290 -1.6258 50 1 7.4676 -3.7869 -0.7485 51 1 5.0917 -3.1403 -0.7295 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424095443.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:39:51 Heat of formation + Delta-G solvation = -71.716814 kcal Electronic energy + Delta-G solvation = -30615.830906 eV Core-core repulsion = 26707.526303 eV Total energy + Delta-G solvation = -3908.304603 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.87531 -39.79556 -38.81219 -37.38002 -36.68040 -34.88030 -33.78654 -32.10128 -31.75020 -30.58667 -29.94957 -28.39070 -27.07078 -25.97870 -24.50065 -23.92993 -23.34820 -22.32933 -21.67477 -20.03569 -19.04108 -18.47092 -17.91423 -17.49091 -17.01606 -16.71646 -16.30491 -16.24024 -16.15092 -15.90887 -15.78665 -15.38412 -15.15949 -14.89514 -14.63951 -14.42257 -14.35411 -14.27635 -13.89966 -13.59506 -13.52667 -13.29730 -13.04504 -12.96576 -12.90268 -12.81795 -12.63239 -12.53176 -12.04784 -12.01597 -11.88049 -11.82630 -11.77382 -11.65071 -11.40071 -10.76986 -10.58509 -10.47123 -9.83129 -9.70250 -9.65190 -9.56743 -8.29349 -6.34938 0.43958 0.52604 1.37496 1.40288 1.50914 1.61786 1.94367 2.36190 2.86295 2.92343 3.06310 3.41835 3.69397 3.79293 3.99106 3.99529 4.07421 4.13717 4.16197 4.19977 4.28185 4.30911 4.36713 4.40745 4.52515 4.59714 4.61674 4.62231 4.63506 4.69298 4.72348 4.76195 4.89080 4.91440 4.93095 4.97525 5.14759 5.15422 5.31116 5.35338 5.44007 5.50792 5.58038 5.62133 5.64874 5.83876 6.02926 6.13648 6.21871 6.25413 6.43398 6.47288 6.73375 7.22336 7.29897 8.87499 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.009756 B = 0.004068 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2869.275311 B = 6881.774775 C = 8471.462599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.401 6.401 3 C 0.045 3.955 4 C 0.098 3.902 5 N -0.597 5.597 6 C 0.525 3.475 7 O -0.550 6.550 8 C 0.077 3.923 9 H 0.113 0.887 10 N -0.828 5.828 11 C -0.118 4.118 12 C -0.004 4.004 13 C -0.532 4.532 14 H 0.025 0.975 15 C 0.005 3.995 16 N -0.953 5.953 17 Si 0.951 3.049 18 H -0.263 1.263 19 H -0.291 1.291 20 H -0.239 1.239 21 C 0.195 3.805 22 H 0.117 0.883 23 C -0.128 4.128 24 C -0.104 4.104 25 C -0.124 4.124 26 C -0.143 4.143 27 C -0.128 4.128 28 C -0.123 4.123 29 C -0.115 4.115 30 H 0.096 0.904 31 H 0.051 0.949 32 H 0.037 0.963 33 H 0.081 0.919 34 H 0.048 0.952 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.353 0.647 38 H 0.345 0.655 39 H 0.039 0.961 40 H 0.063 0.937 41 H 0.031 0.969 42 H 0.024 0.976 43 H 0.266 0.734 44 H 0.046 0.954 45 H 0.046 0.954 46 H 0.075 0.925 47 H 0.104 0.896 48 H 0.113 0.887 49 H 0.139 0.861 50 H 0.151 0.849 51 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.486 -19.411 0.334 23.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.320 6.320 3 C -0.032 4.032 4 C -0.025 4.025 5 N -0.329 5.329 6 C 0.314 3.686 7 O -0.428 6.428 8 C -0.038 4.038 9 H 0.131 0.869 10 N -0.360 5.360 11 C -0.158 4.158 12 C -0.041 4.041 13 C -0.570 4.570 14 H 0.043 0.957 15 C -0.192 4.192 16 N -0.593 5.593 17 Si 0.774 3.226 18 H -0.188 1.188 19 H -0.217 1.217 20 H -0.162 1.162 21 C 0.092 3.908 22 H 0.135 0.865 23 C -0.185 4.185 24 C -0.105 4.105 25 C -0.142 4.142 26 C -0.161 4.161 27 C -0.146 4.146 28 C -0.140 4.140 29 C -0.133 4.133 30 H 0.115 0.885 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.099 0.901 34 H 0.067 0.933 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.169 0.831 38 H 0.158 0.842 39 H 0.058 0.942 40 H 0.081 0.919 41 H 0.050 0.950 42 H 0.043 0.957 43 H 0.074 0.926 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.094 0.906 47 H 0.122 0.878 48 H 0.131 0.869 49 H 0.157 0.843 50 H 0.169 0.831 51 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -13.832 -20.133 -0.241 24.428 hybrid contribution 1.028 1.926 0.171 2.190 sum -12.804 -18.206 -0.069 22.258 Atomic orbital electron populations 1.22854 0.79952 1.03626 1.00335 1.87831 1.20923 1.27727 1.95547 1.23057 0.93195 0.85360 1.01607 1.22006 0.94114 1.01600 0.84777 1.48015 1.68680 1.06103 1.10139 1.20631 0.75243 0.88964 0.83784 1.90653 1.48179 1.77519 1.26433 1.21520 0.98828 0.90520 0.92906 0.86944 1.58763 1.50389 1.16562 1.10254 1.22053 0.95858 0.97729 1.00149 1.19485 0.95577 0.92601 0.96468 1.21391 1.00464 0.94862 1.40305 0.95677 1.26046 0.98756 1.00312 0.94096 1.70085 1.28862 1.16405 1.43959 0.85645 0.79243 0.77229 0.80465 1.18756 1.21690 1.16186 1.19998 0.91082 0.79656 1.00053 0.86520 1.21885 0.99789 1.01029 0.95834 1.20417 0.95647 0.95273 0.99136 1.21332 0.93644 1.00174 0.99040 1.21339 0.95979 0.97849 1.00963 1.21417 1.00827 0.93607 0.98733 1.21447 0.92744 1.00430 0.99407 1.21261 0.97113 0.95467 0.99473 0.88519 0.92995 0.94445 0.90097 0.93331 0.88148 0.88136 0.83146 0.84231 0.94188 0.91856 0.95037 0.95737 0.92556 0.93499 0.93484 0.90616 0.87779 0.86863 0.84349 0.83142 0.83382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.64 16 2 O -0.40 -7.52 9.80 -148.98 -1.46 -8.98 16 3 C 0.05 0.83 6.09 71.98 0.44 1.27 16 4 C 0.10 2.09 5.31 86.38 0.46 2.55 16 5 N -0.60 -15.38 2.12 -802.01 -1.70 -17.08 16 6 C 0.53 16.32 4.58 87.66 0.40 16.72 16 7 O -0.55 -19.99 11.91 -3.04 -0.04 -20.03 16 8 C 0.08 2.36 2.36 44.17 0.10 2.46 16 9 H 0.11 3.01 6.29 -2.39 -0.01 2.99 16 10 N -0.83 -25.34 8.94 -171.80 -1.54 -26.88 16 11 C -0.12 -4.34 4.45 30.60 0.14 -4.21 16 12 C 0.00 -0.16 3.81 29.85 0.11 -0.05 16 13 C -0.53 -29.54 9.66 25.60 0.25 -29.29 16 14 H 0.02 1.57 7.99 -2.91 -0.02 1.55 16 15 C 0.00 0.26 5.47 84.65 0.46 0.73 16 16 N -0.95 -58.87 13.96 21.45 0.30 -58.57 16 17 Si 0.95 41.94 27.47 68.60 1.88 43.83 16 18 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 19 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 20 H -0.24 -9.43 6.54 99.48 0.65 -8.78 16 21 C 0.19 4.70 2.64 44.24 0.12 4.81 16 22 H 0.12 2.38 7.33 -2.39 -0.02 2.36 16 23 C -0.13 -3.23 8.10 71.98 0.58 -2.64 16 24 C -0.10 -2.72 4.84 -19.87 -0.10 -2.82 16 25 C -0.12 -3.92 8.78 22.27 0.20 -3.72 16 26 C -0.14 -4.19 10.05 22.27 0.22 -3.97 16 27 C -0.13 -3.00 10.05 22.27 0.22 -2.77 16 28 C -0.12 -2.46 10.05 22.27 0.22 -2.24 16 29 C -0.11 -2.42 9.70 22.27 0.22 -2.21 16 30 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.08 1.18 8.14 -2.39 -0.02 1.17 16 34 H 0.05 0.95 7.43 -2.39 -0.02 0.93 16 35 H 0.10 1.94 8.08 -2.39 -0.02 1.92 16 36 H 0.10 2.31 4.86 -2.39 -0.01 2.30 16 37 H 0.35 10.21 7.55 -89.70 -0.68 9.53 16 38 H 0.34 11.13 8.58 -89.69 -0.77 10.36 16 39 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.06 2.32 6.53 -2.38 -0.02 2.30 16 41 H 0.03 1.24 7.57 -2.39 -0.02 1.22 16 42 H 0.02 1.01 5.93 -2.39 -0.01 1.00 16 43 H 0.27 15.33 8.31 -92.70 -0.77 14.56 16 44 H 0.05 1.30 7.60 -2.39 -0.02 1.29 16 45 H 0.05 1.44 6.75 -2.39 -0.02 1.42 16 46 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 47 H 0.10 3.79 4.46 -2.91 -0.01 3.78 16 48 H 0.11 3.27 8.06 -2.91 -0.02 3.25 16 49 H 0.14 2.55 8.06 -2.91 -0.02 2.53 16 50 H 0.15 2.03 8.06 -2.91 -0.02 2.00 16 51 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -71.09 398.21 2.19 -68.90 By element: Atomic # 1 Polarization: 43.10 SS G_CDS: -0.56 Total: 42.54 kcal Atomic # 6 Polarization: -29.03 SS G_CDS: 5.30 Total: -23.74 kcal Atomic # 7 Polarization: -99.59 SS G_CDS: -2.94 Total: -102.52 kcal Atomic # 8 Polarization: -27.51 SS G_CDS: -1.50 Total: -29.01 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 1.88 Total: 43.83 kcal Total: -71.09 2.19 -68.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424095443.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.816 kcal (2) G-P(sol) polarization free energy of solvation -71.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds