Wall clock time and date at job start Tue Mar 31 2020 19:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 114.00059 * 2 1 4 4 C 1.52999 * 109.47130 * 184.72978 * 3 2 1 5 5 N 1.46497 * 109.47283 * 64.16103 * 4 3 2 6 6 C 1.34770 * 120.00374 * 264.43361 * 5 4 3 7 7 O 1.21280 * 120.00707 * 184.67831 * 6 5 4 8 8 C 1.50709 * 119.99917 * 4.68512 * 6 5 4 9 9 H 1.08999 * 109.46688 * 32.73000 * 8 6 5 10 10 N 1.46892 * 109.47344 * 152.72952 * 8 6 5 11 11 C 1.52999 * 109.46784 * 272.73409 * 8 6 5 12 12 C 1.53002 * 109.47124 * 174.25150 * 11 8 6 13 13 C 1.50699 * 109.47235 * 180.02562 * 12 11 8 14 14 H 1.07997 * 119.99655 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00016 * 180.02562 * 13 12 11 16 16 N 1.31520 * 120.00219 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 120.00093 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47026 * 59.99605 * 17 15 13 19 19 H 1.48498 * 109.46773 * 179.97438 * 17 15 13 20 20 H 1.48492 * 109.46776 * 299.99712 * 17 15 13 21 21 C 1.46510 * 119.99883 * 84.43521 * 5 4 3 22 22 H 1.09004 * 109.46912 * 235.84632 * 21 5 4 23 23 C 1.52994 * 109.46857 * 355.84670 * 21 5 4 24 24 C 1.50697 * 109.47137 * 115.84706 * 21 5 4 25 25 C 1.38239 * 119.99890 * 314.39632 * 24 21 5 26 26 C 1.38235 * 119.99621 * 179.80647 * 25 24 21 27 27 C 1.38238 * 119.99993 * 0.40068 * 26 25 24 28 28 C 1.38227 * 119.99935 * 359.85381 * 27 26 25 29 29 C 1.38230 * 120.00556 * 359.95311 * 28 27 26 30 30 H 1.09004 * 109.46729 * 304.73605 * 1 2 3 31 31 H 1.08996 * 109.47121 * 64.73218 * 1 2 3 32 32 H 1.08994 * 109.47115 * 184.73633 * 1 2 3 33 33 H 1.08995 * 109.47060 * 64.72788 * 3 2 1 34 34 H 1.09007 * 109.47277 * 304.72875 * 3 2 1 35 35 H 1.09003 * 109.47107 * 304.15937 * 4 3 2 36 36 H 1.09003 * 109.47483 * 184.16047 * 4 3 2 37 37 H 1.00899 * 111.00513 * 296.04925 * 10 8 6 38 38 H 1.00905 * 111.00086 * 60.00090 * 10 8 6 39 39 H 1.09006 * 109.46854 * 294.24354 * 11 8 6 40 40 H 1.08997 * 109.47526 * 54.24706 * 11 8 6 41 41 H 1.09006 * 109.46605 * 299.99356 * 12 11 8 42 42 H 1.08997 * 109.47281 * 59.99406 * 12 11 8 43 43 H 0.96994 * 120.00033 * 180.02562 * 16 15 13 44 44 H 1.08996 * 109.47608 * 299.99959 * 23 21 5 45 45 H 1.08997 * 109.47757 * 60.00402 * 23 21 5 46 46 H 1.09002 * 109.46814 * 180.02562 * 23 21 5 47 47 H 1.07994 * 120.00227 * 359.97438 * 25 24 21 48 48 H 1.07998 * 119.99995 * 180.22321 * 26 25 24 49 49 H 1.08000 * 120.00109 * 179.82883 * 27 26 25 50 50 H 1.08010 * 119.99848 * 179.97438 * 28 27 26 51 51 H 1.08000 * 120.00742 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5310 1.1866 -0.1189 5 7 3.8746 0.5906 -1.4123 6 6 4.0971 -0.7354 -1.5055 7 8 4.4641 -1.2164 -2.5566 8 6 3.8898 -1.6205 -0.3035 9 1 3.0768 -1.2233 0.3043 10 7 3.5502 -2.9787 -0.7482 11 6 5.1741 -1.6619 0.5270 12 6 4.9214 -2.4420 1.8187 13 6 6.1862 -2.4822 2.6369 14 1 7.0810 -2.0000 2.2719 15 6 6.2014 -3.1355 3.8509 16 7 5.1119 -3.7232 4.2952 17 14 7.7695 -3.1860 4.8649 18 1 8.1887 -1.8008 5.1976 19 1 7.5241 -3.9431 6.1186 20 1 8.8421 -3.8538 4.0847 21 6 3.9764 1.4359 -2.6046 22 1 3.3093 1.0551 -3.3780 23 6 3.5785 2.8697 -2.2486 24 6 5.3952 1.4197 -3.1123 25 6 6.4473 1.5704 -2.2284 26 6 7.7489 1.5515 -2.6936 27 6 7.9980 1.3902 -4.0437 28 6 6.9457 1.2448 -4.9282 29 6 5.6443 1.2597 -4.4626 30 1 -0.3633 0.5856 0.8446 31 1 -0.3633 0.4386 -0.9293 32 1 -0.3633 -1.0241 0.0849 33 1 1.7573 1.8158 0.9293 34 1 1.6232 1.8756 -0.8446 35 1 3.9100 0.5549 0.6844 36 1 3.9798 2.1772 -0.0447 37 1 2.6716 -2.9877 -1.2442 38 1 4.2888 -3.3692 -1.3140 39 1 5.9613 -2.1525 -0.0456 40 1 5.4821 -0.6451 0.7709 41 1 4.1342 -1.9513 2.3912 42 1 4.6134 -3.4587 1.5748 43 1 5.1225 -4.1825 5.1494 44 1 2.5523 2.8815 -1.8813 45 1 4.2454 3.2506 -1.4752 46 1 3.6537 3.4985 -3.1357 47 1 6.2525 1.7001 -1.1741 48 1 8.5710 1.6655 -2.0026 49 1 9.0148 1.3782 -4.4076 50 1 7.1404 1.1192 -5.9831 51 1 4.8221 1.1457 -5.1535 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424095444.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:39:57 Heat of formation + Delta-G solvation = -55.491712 kcal Electronic energy + Delta-G solvation = -30640.234045 eV Core-core repulsion = 26732.633015 eV Total energy + Delta-G solvation = -3907.601030 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.54787 -38.85467 -37.90179 -36.20235 -35.04683 -32.83075 -32.41730 -30.83937 -30.02102 -29.78832 -29.26554 -26.43064 -26.31252 -24.17412 -23.53276 -22.56740 -22.49295 -21.02314 -19.96767 -18.76009 -17.36196 -16.90080 -16.82032 -16.19383 -16.04106 -15.76257 -15.41376 -15.18228 -14.91699 -14.62398 -14.39617 -14.14436 -13.89757 -13.64238 -13.33447 -13.24800 -13.02700 -12.89335 -12.38537 -12.32884 -12.20399 -12.08676 -11.83427 -11.81857 -11.71082 -11.42047 -11.15041 -10.95238 -10.93025 -10.82309 -10.57132 -10.35414 -9.90318 -9.71328 -9.67046 -9.25623 -8.92955 -8.85876 -8.77028 -8.53624 -8.23765 -7.99834 -5.87647 -3.89414 1.37390 1.46856 2.97752 3.07859 3.39172 3.43640 3.46313 3.67903 3.85744 4.54150 4.57836 4.66554 4.87100 4.88872 4.98337 4.99983 5.04443 5.11237 5.14697 5.17976 5.22251 5.24560 5.27158 5.37326 5.43137 5.47620 5.51643 5.61886 5.64022 5.67274 5.76350 5.89546 5.93214 6.01649 6.08151 6.15269 6.48390 6.49768 6.55683 6.57898 6.70570 6.83674 7.04344 7.09769 7.20111 7.49276 7.70211 7.84087 7.98289 8.05521 8.22170 8.49743 8.56173 9.18717 9.73127 11.23168 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.009360 B = 0.004102 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2990.845693 B = 6824.510161 C = 8620.805721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.378 6.378 3 C 0.039 3.961 4 C 0.096 3.904 5 N -0.605 5.605 6 C 0.495 3.505 7 O -0.545 6.545 8 C 0.075 3.925 9 H 0.118 0.882 10 N -0.806 5.806 11 C -0.094 4.094 12 C 0.034 3.966 13 C -0.520 4.520 14 H 0.050 0.950 15 C 0.059 3.941 16 N -0.893 5.893 17 Si 0.887 3.113 18 H -0.279 1.279 19 H -0.288 1.288 20 H -0.278 1.278 21 C 0.184 3.816 22 H 0.078 0.922 23 C -0.159 4.159 24 C -0.080 4.080 25 C -0.101 4.101 26 C -0.119 4.119 27 C -0.124 4.124 28 C -0.122 4.122 29 C -0.102 4.102 30 H 0.040 0.960 31 H 0.035 0.965 32 H 0.087 0.913 33 H 0.060 0.940 34 H 0.052 0.948 35 H 0.105 0.895 36 H 0.095 0.905 37 H 0.332 0.668 38 H 0.343 0.657 39 H 0.050 0.950 40 H 0.048 0.952 41 H 0.013 0.987 42 H 0.034 0.966 43 H 0.259 0.741 44 H 0.068 0.932 45 H 0.067 0.933 46 H 0.070 0.930 47 H 0.118 0.882 48 H 0.120 0.880 49 H 0.118 0.882 50 H 0.118 0.882 51 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.365 16.438 -14.924 23.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.297 6.297 3 C -0.038 4.038 4 C -0.027 4.027 5 N -0.339 5.339 6 C 0.283 3.717 7 O -0.421 6.421 8 C -0.040 4.040 9 H 0.136 0.864 10 N -0.334 5.334 11 C -0.133 4.133 12 C -0.003 4.003 13 C -0.559 4.559 14 H 0.068 0.932 15 C -0.142 4.142 16 N -0.532 5.532 17 Si 0.715 3.285 18 H -0.204 1.204 19 H -0.214 1.214 20 H -0.204 1.204 21 C 0.081 3.919 22 H 0.096 0.904 23 C -0.216 4.216 24 C -0.081 4.081 25 C -0.119 4.119 26 C -0.137 4.137 27 C -0.142 4.142 28 C -0.140 4.140 29 C -0.121 4.121 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.105 0.895 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.123 0.877 36 H 0.113 0.887 37 H 0.143 0.857 38 H 0.156 0.844 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.031 0.969 42 H 0.052 0.948 43 H 0.069 0.931 44 H 0.087 0.913 45 H 0.086 0.914 46 H 0.089 0.911 47 H 0.136 0.864 48 H 0.138 0.862 49 H 0.136 0.864 50 H 0.136 0.864 51 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.146 15.690 -14.544 22.260 hybrid contribution 0.712 0.626 -0.364 1.016 sum -5.434 16.316 -14.908 22.759 Atomic orbital electron populations 1.22725 0.81256 1.02982 0.99388 1.87957 1.19494 1.26968 1.95284 1.23186 0.94505 0.85699 1.00443 1.21899 0.93225 1.00986 0.86590 1.48158 1.70451 1.07368 1.07960 1.22719 0.74784 0.82180 0.92045 1.90636 1.45830 1.74047 1.31612 1.22021 1.02277 0.87250 0.92501 0.86444 1.59001 1.07428 1.18431 1.48503 1.21645 0.92822 1.00368 0.98439 1.18985 0.96138 0.96240 0.88963 1.21257 0.97115 1.33932 1.03588 0.93167 1.24973 0.95868 0.95635 0.97742 1.69970 1.27188 1.35736 1.20297 0.86749 0.84156 0.77969 0.79626 1.20427 1.21369 1.20365 1.19803 0.92923 0.91023 0.88156 0.90411 1.22229 1.01991 0.94615 1.02811 1.20019 0.95085 0.99315 0.93680 1.20909 0.92320 0.99391 0.99325 1.21125 0.96740 1.00189 0.95658 1.21099 0.98835 1.00625 0.93624 1.21047 0.92772 1.00764 0.99447 1.20877 0.96727 0.99638 0.94856 0.94092 0.94644 0.89479 0.92142 0.92990 0.87687 0.88693 0.85703 0.84370 0.93162 0.93350 0.96903 0.94774 0.93133 0.91345 0.91362 0.91079 0.86445 0.86196 0.86434 0.86421 0.86600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.43 16 2 O -0.38 -4.79 8.05 -35.23 -0.28 -5.07 16 3 C 0.04 0.39 6.07 37.16 0.23 0.62 16 4 C 0.10 1.08 5.03 -4.04 -0.02 1.06 16 5 N -0.61 -8.03 2.03 -167.42 -0.34 -8.37 16 6 C 0.49 8.40 6.42 -10.98 -0.07 8.33 16 7 O -0.54 -10.69 15.51 5.56 0.09 -10.60 16 8 C 0.07 1.37 2.19 -68.86 -0.15 1.21 16 9 H 0.12 2.15 4.54 -51.93 -0.24 1.91 16 10 N -0.81 -14.87 8.54 -5.66 -0.05 -14.92 16 11 C -0.09 -2.02 4.48 -26.73 -0.12 -2.14 16 12 C 0.03 0.89 4.87 -27.88 -0.14 0.75 16 13 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 14 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 15 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -27.19 13.29 55.43 0.74 -26.46 16 17 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 21 C 0.18 2.15 2.86 -69.08 -0.20 1.96 16 22 H 0.08 0.97 7.95 -51.93 -0.41 0.56 16 23 C -0.16 -1.29 8.01 37.15 0.30 -0.99 16 24 C -0.08 -1.04 3.71 -104.62 -0.39 -1.43 16 25 C -0.10 -1.36 9.22 -39.58 -0.37 -1.72 16 26 C -0.12 -1.52 10.05 -39.58 -0.40 -1.92 16 27 C -0.12 -1.48 10.05 -39.59 -0.40 -1.87 16 28 C -0.12 -1.45 10.05 -39.59 -0.40 -1.85 16 29 C -0.10 -1.29 9.67 -39.58 -0.38 -1.67 16 30 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.05 0.44 5.87 -51.93 -0.30 0.14 16 35 H 0.10 1.43 5.10 -51.93 -0.26 1.17 16 36 H 0.10 0.81 6.08 -51.93 -0.32 0.50 16 37 H 0.33 5.45 9.06 -39.29 -0.36 5.10 16 38 H 0.34 6.44 8.55 -39.29 -0.34 6.11 16 39 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.05 0.97 6.98 -51.93 -0.36 0.61 16 41 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.03 0.98 7.78 -51.93 -0.40 0.57 16 43 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 44 H 0.07 0.48 5.55 -51.93 -0.29 0.19 16 45 H 0.07 0.52 6.67 -51.93 -0.35 0.18 16 46 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.12 1.53 7.89 -52.49 -0.41 1.11 16 48 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 49 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 50 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 51 H 0.12 1.29 8.00 -52.49 -0.42 0.87 16 LS Contribution 403.76 15.07 6.08 6.08 Total: -1.00 -34.35 403.76 -8.81 -43.17 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: -8.23 Total: 11.10 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: -1.80 Total: -11.88 kcal Atomic # 7 Polarization: -50.09 SS G_CDS: 0.35 Total: -49.74 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: -0.20 Total: -15.68 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.35 -8.81 -43.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424095444.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.324 kcal (2) G-P(sol) polarization free energy of solvation -34.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds